Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47409 * 2 1 4 4 C 1.37100 * 119.99914 * 263.25384 * 3 2 1 5 5 H 1.08007 * 120.00271 * 198.85650 * 4 3 2 6 6 C 1.38946 * 120.00069 * 18.86129 * 4 3 2 7 7 N 1.31419 * 119.99848 * 1.78217 * 6 4 3 8 8 Si 1.86793 * 120.00173 * 181.78382 * 6 4 3 9 9 H 1.48502 * 109.47304 * 89.99920 * 8 6 4 10 10 H 1.48509 * 109.47481 * 209.99676 * 8 6 4 11 11 H 1.48499 * 109.47297 * 330.00114 * 8 6 4 12 12 C 1.34781 * 120.00390 * 83.25358 * 3 2 1 13 13 O 1.21287 * 120.00167 * 183.75129 * 12 3 2 14 14 C 1.50703 * 119.99419 * 3.75140 * 12 3 2 15 15 H 1.08997 * 109.47500 * 331.72303 * 14 12 3 16 16 C 1.52997 * 109.46564 * 211.72284 * 14 12 3 17 17 C 1.52996 * 109.47590 * 62.92420 * 16 14 12 18 18 S 1.81399 * 109.47455 * 184.46271 * 17 16 14 19 19 C 1.81399 * 101.91971 * 179.97438 * 18 17 16 20 20 O 1.42100 * 108.57643 * 294.48650 * 18 17 16 21 21 O 1.42101 * 108.57903 * 65.51222 * 18 17 16 22 22 C 1.50704 * 109.47003 * 91.72811 * 14 12 3 23 23 C 1.38229 * 120.00136 * 59.72218 * 22 14 12 24 24 C 1.38241 * 119.99791 * 179.78913 * 23 22 14 25 25 C 1.38232 * 119.99879 * 0.44037 * 24 23 22 26 26 C 1.38236 * 119.99985 * 359.81234 * 25 24 23 27 27 C 1.38233 * 119.99550 * 239.99707 * 22 14 12 28 28 H 1.09004 * 109.47567 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47257 * 300.00302 * 1 2 3 30 30 H 1.09003 * 109.46851 * 59.99934 * 1 2 3 31 31 H 1.09005 * 109.47568 * 239.99648 * 2 1 3 32 32 H 1.09007 * 109.47096 * 119.99619 * 2 1 3 33 33 H 0.96998 * 119.99956 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47018 * 182.92393 * 16 14 12 35 35 H 1.09001 * 109.47702 * 302.92062 * 16 14 12 36 36 H 1.08999 * 109.46805 * 304.46284 * 17 16 14 37 37 H 1.09001 * 109.46845 * 64.46035 * 17 16 14 38 38 H 1.09009 * 109.47085 * 60.00082 * 19 18 17 39 39 H 1.09001 * 109.47308 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.47579 * 300.00202 * 19 18 17 41 41 H 1.08008 * 120.00367 * 359.97438 * 23 22 14 42 42 H 1.08003 * 119.99784 * 180.27739 * 24 23 22 43 43 H 1.08002 * 119.99977 * 179.83481 * 25 24 23 44 44 H 1.07999 * 119.99947 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00362 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3783 1.9809 -1.1791 5 1 3.0097 2.8571 -1.1686 6 6 1.9309 1.4616 -2.3877 7 7 1.1341 0.4166 -2.3991 8 14 2.4618 2.2488 -3.9963 9 1 3.7155 1.6094 -4.4703 10 1 1.3961 2.0631 -5.0138 11 1 2.6959 3.6997 -3.7838 12 6 2.1137 2.0623 1.1591 13 8 2.4530 3.2267 1.1521 14 6 1.7989 1.3769 2.4638 15 1 1.0741 0.5815 2.2908 16 6 1.2149 2.3941 3.4462 17 6 -0.1047 2.9369 2.8942 18 16 -0.7305 4.2376 3.9929 19 6 -2.2667 4.7246 3.1600 20 8 -1.0598 3.6525 5.2453 21 8 0.1717 5.3348 3.9554 22 6 3.0614 0.7896 3.0402 23 6 4.1322 1.6111 3.3389 24 6 5.2887 1.0728 3.8717 25 6 5.3776 -0.2881 4.0971 26 6 4.3087 -1.1103 3.7935 27 6 3.1507 -0.5715 3.2647 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.8220 0.0538 -3.2428 34 1 1.0355 1.9104 4.4063 35 1 1.9184 3.2160 3.5794 36 1 0.0603 3.3501 1.8991 37 1 -0.8338 2.1287 2.8357 38 1 -2.9324 3.8640 3.0934 39 1 -2.7532 5.5167 3.7292 40 1 -2.0378 5.0853 2.1573 41 1 4.0643 2.6739 3.1590 42 1 6.1237 1.7153 4.1093 43 1 6.2822 -0.7090 4.5109 44 1 4.3783 -2.1736 3.9692 45 1 2.3155 -1.2139 3.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279236139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = -92.200932 kcal Electronic energy + Delta-G solvation = -28650.988939 eV Core-core repulsion = 24760.541141 eV Total energy + Delta-G solvation = -3890.447798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28751 -39.54526 -37.98576 -37.21309 -37.03315 -35.74931 -33.65431 -32.26328 -31.74884 -31.17791 -30.39835 -28.45763 -26.63753 -24.17053 -23.82633 -23.20922 -22.61010 -20.11567 -19.81996 -18.83166 -18.25581 -17.96727 -17.30673 -17.09471 -16.92897 -16.54432 -16.16328 -15.82186 -15.52383 -15.48902 -15.18135 -14.56814 -14.52714 -14.19351 -14.08775 -13.96349 -13.93440 -13.57667 -13.44965 -13.23112 -13.18552 -13.12176 -13.02893 -12.86295 -12.75336 -12.60469 -12.22450 -12.17944 -12.07285 -11.98331 -11.94305 -11.73237 -11.64512 -11.28458 -10.77622 -10.37062 -9.78752 -9.59309 -9.50771 -8.17808 -5.89541 -0.92063 0.43741 0.53142 1.36521 1.41546 1.51701 1.86281 2.07422 2.27844 2.68435 2.88326 3.09040 3.12530 3.16389 3.56499 3.80537 3.93693 4.03109 4.08715 4.09329 4.15075 4.22841 4.28022 4.33065 4.45601 4.56969 4.65277 4.68783 4.71245 4.91688 4.94219 4.95555 4.97574 5.06370 5.11975 5.18963 5.22233 5.43539 5.59532 5.62986 5.64489 5.74730 5.97150 6.13892 6.18573 6.61204 7.23328 7.56576 8.11636 8.71287 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007899 B = 0.005324 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.800895 B = 5258.197798 C = 7521.278334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 N -0.451 5.451 4 C -0.333 4.333 5 H 0.065 0.935 6 C 0.001 3.999 7 N -0.878 5.878 8 Si 0.981 3.019 9 H -0.273 1.273 10 H -0.270 1.270 11 H -0.283 1.283 12 C 0.452 3.548 13 O -0.628 6.628 14 C -0.049 4.049 15 H 0.113 0.887 16 C -0.090 4.090 17 C -0.610 4.610 18 S 2.429 3.571 19 C -0.636 4.636 20 O -0.972 6.972 21 O -0.990 6.990 22 C -0.088 4.088 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.270 0.730 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 -5.021 10.181 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 N -0.169 5.169 4 C -0.461 4.461 5 H 0.083 0.917 6 C -0.200 4.200 7 N -0.518 5.518 8 Si 0.806 3.194 9 H -0.199 1.199 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.241 3.759 13 O -0.516 6.516 14 C -0.071 4.071 15 H 0.131 0.869 16 C -0.129 4.129 17 C -0.739 4.739 18 S 2.616 3.384 19 C -0.789 4.789 20 O -0.970 6.970 21 O -0.988 6.988 22 C -0.088 4.088 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.316 -4.268 10.781 12.372 hybrid contribution 0.133 0.542 -1.947 2.026 sum -4.183 -3.726 8.834 10.460 Atomic orbital electron populations 1.22035 0.95441 1.01231 1.00791 1.21633 0.95453 0.82354 1.01136 1.43945 1.55613 1.12280 1.05080 1.19577 1.29662 1.12540 0.84346 0.91694 1.25833 0.95774 0.97064 1.01318 1.70098 1.32189 1.22304 1.27223 0.85121 0.78205 0.78099 0.78014 1.19879 1.19449 1.20870 1.20507 0.83112 0.86489 0.85758 1.90492 1.54654 1.18807 1.87604 1.20222 0.96265 0.98610 0.91987 0.86881 1.21155 0.94050 0.98933 0.98717 1.30332 1.08207 1.19309 1.16054 1.07274 0.78382 0.75982 0.76769 1.30076 1.19157 1.14449 1.15213 1.93525 1.84888 1.78753 1.39785 1.93540 1.64624 1.52882 1.87710 1.19651 0.94750 0.94754 0.99687 1.21177 0.94526 0.99675 0.99592 1.21367 0.97290 0.96667 0.99407 1.21501 0.99829 0.92959 0.99772 1.21493 0.92666 1.01225 0.98297 1.21339 0.99747 0.93265 0.99295 0.91763 0.94251 0.92310 0.89045 0.92962 0.91961 0.87820 0.91926 0.86117 0.81570 0.82188 0.83566 0.84136 0.88282 0.84796 0.83161 0.82808 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.38 71.98 0.68 -4.38 16 2 C 0.12 4.90 4.91 86.38 0.42 5.33 16 3 N -0.45 -22.34 2.64 -635.54 -1.68 -24.01 16 4 C -0.33 -18.41 9.38 84.04 0.79 -17.63 16 5 H 0.07 3.93 7.35 -2.91 -0.02 3.91 16 6 C 0.00 0.07 5.31 84.92 0.45 0.52 16 7 N -0.88 -42.56 7.87 21.66 0.17 -42.39 16 8 Si 0.98 41.72 29.55 68.60 2.03 43.75 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.45 21.36 5.23 87.66 0.46 21.82 16 13 O -0.63 -34.74 14.99 -3.05 -0.05 -34.79 16 14 C -0.05 -1.75 1.61 -12.28 -0.02 -1.77 16 15 H 0.11 3.53 4.94 -2.39 -0.01 3.52 16 16 C -0.09 -2.96 4.19 30.59 0.13 -2.83 16 17 C -0.61 -16.71 5.65 71.98 0.41 -16.30 16 18 S 2.43 61.10 5.36 -56.49 -0.30 60.80 16 19 C -0.64 -9.31 10.62 113.37 1.20 -8.11 16 20 O -0.97 -28.38 18.10 -127.37 -2.31 -30.69 16 21 O -0.99 -35.41 18.10 -127.37 -2.30 -37.72 16 22 C -0.09 -3.00 4.64 -19.87 -0.09 -3.09 16 23 C -0.13 -4.72 8.84 22.27 0.20 -4.52 16 24 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 25 C -0.12 -2.92 10.05 22.27 0.22 -2.69 16 26 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 27 C -0.12 -3.26 8.93 22.27 0.20 -3.07 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.27 7.01 -2.39 -0.02 1.25 16 30 H 0.06 2.55 6.33 -2.39 -0.02 2.53 16 31 H 0.09 4.30 5.79 -2.38 -0.01 4.29 16 32 H 0.05 1.90 5.59 -2.38 -0.01 1.89 16 33 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 34 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 2.39 7.12 -2.39 -0.02 2.37 16 36 H 0.12 3.94 6.83 -2.39 -0.02 3.92 16 37 H 0.17 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 4.06 7.26 -2.91 -0.02 4.04 16 42 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.14 3.22 7.69 -2.91 -0.02 3.20 16 Total: -1.00 -78.89 374.00 2.05 -76.84 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.99 Total: 30.99 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 5.49 Total: -42.79 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -1.51 Total: -66.40 kcal Atomic # 8 Polarization: -98.53 SS G_CDS: -4.66 Total: -103.19 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 61.10 SS G_CDS: -0.30 Total: 60.80 kcal Total: -78.89 2.05 -76.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279236139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.360 kcal (2) G-P(sol) polarization free energy of solvation -78.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds