Wall clock time and date at job start Tue Mar 31 2020 23:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00098 * 2 1 4 4 C 1.50699 * 109.47156 * 90.00239 * 3 2 1 5 5 H 1.07996 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99961 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99828 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00011 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47050 * 90.00155 * 8 6 4 10 10 H 1.48499 * 109.47009 * 209.99993 * 8 6 4 11 11 H 1.48503 * 109.47394 * 329.99914 * 8 6 4 12 12 C 1.34776 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99981 * 185.28004 * 12 2 1 14 14 C 1.50705 * 120.00088 * 5.27838 * 12 2 1 15 15 H 1.09006 * 109.47040 * 30.54821 * 14 12 2 16 16 C 1.52996 * 109.47265 * 150.54826 * 14 12 2 17 17 C 1.53000 * 109.47197 * 184.99803 * 16 14 12 18 18 S 1.81400 * 109.47108 * 179.97438 * 17 16 14 19 19 C 1.81397 * 101.92117 * 180.02562 * 18 17 16 20 20 O 1.42097 * 108.57907 * 294.49073 * 18 17 16 21 21 O 1.42101 * 108.57515 * 65.51810 * 18 17 16 22 22 C 1.50697 * 109.47253 * 270.55353 * 14 12 2 23 23 C 1.38237 * 119.99787 * 293.76140 * 22 14 12 24 24 C 1.38238 * 120.00076 * 179.78759 * 23 22 14 25 25 C 1.38231 * 119.99693 * 0.44081 * 24 23 22 26 26 C 1.38232 * 120.00159 * 359.80851 * 25 24 23 27 27 C 1.38232 * 120.00330 * 114.03306 * 22 14 12 28 28 H 1.09002 * 109.47347 * 95.16264 * 1 2 3 29 29 H 1.08988 * 109.47351 * 215.16322 * 1 2 3 30 30 H 1.09005 * 109.46928 * 335.16814 * 1 2 3 31 31 H 1.09000 * 109.47197 * 209.99894 * 3 2 1 32 32 H 1.09001 * 109.47137 * 330.00015 * 3 2 1 33 33 H 0.97001 * 120.00350 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47403 * 305.00629 * 16 14 12 35 35 H 1.09001 * 109.47003 * 65.00462 * 16 14 12 36 36 H 1.08991 * 109.47488 * 300.00337 * 17 16 14 37 37 H 1.09001 * 109.46607 * 60.00416 * 17 16 14 38 38 H 1.09000 * 109.47341 * 60.00034 * 19 18 17 39 39 H 1.09002 * 109.47438 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47192 * 300.00485 * 19 18 17 41 41 H 1.07998 * 120.00197 * 359.97438 * 23 22 14 42 42 H 1.07995 * 119.99841 * 180.27188 * 24 23 22 43 43 H 1.08002 * 119.99777 * 179.83148 * 25 24 23 44 44 H 1.08004 * 120.00055 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00040 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.3467 3.2567 2.9126 8 14 3.7352 3.9279 0.2529 9 1 2.6842 4.9069 -0.1241 10 1 4.9632 4.6540 0.6650 11 1 4.0416 3.0579 -0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0961 14 6 1.3901 -2.4695 -0.1212 15 1 0.4863 -2.3157 -0.7109 16 6 2.2787 -3.5067 -0.8107 17 6 1.4779 -4.7891 -1.0454 18 16 2.5312 -6.0185 -1.8636 19 6 1.3988 -7.4248 -2.0391 20 8 2.8623 -5.5401 -3.1600 21 8 3.5749 -6.3857 -0.9720 22 6 1.0155 -2.9627 1.2526 23 6 2.0015 -3.3521 2.1399 24 6 1.6581 -3.8004 3.4016 25 6 0.3283 -3.8679 3.7729 26 6 -0.6579 -3.4834 2.8840 27 6 -0.3144 -3.0311 1.6237 28 1 -0.3634 -0.0925 -1.0235 29 1 -0.3633 -0.8400 0.5918 30 1 -0.3633 0.9327 0.4316 31 1 3.1499 1.1383 -0.5138 32 1 1.6084 2.0283 -0.5138 33 1 3.8235 4.0826 3.0900 34 1 2.6222 -3.1126 -1.7671 35 1 3.1388 -3.7262 -0.1782 36 1 1.1345 -5.1832 -0.0890 37 1 0.6177 -4.5696 -1.6779 38 1 0.5409 -7.1275 -2.6421 39 1 1.9174 -8.2503 -2.5266 40 1 1.0577 -7.7418 -1.0535 41 1 3.0402 -3.3033 1.8483 42 1 2.4287 -4.1005 4.0963 43 1 0.0599 -4.2207 4.7578 44 1 -1.6969 -3.5358 3.1742 45 1 -1.0849 -2.7306 0.9291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279306519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:28 Heat of formation + Delta-G solvation = -76.042980 kcal Electronic energy + Delta-G solvation = -27974.127107 eV Core-core repulsion = 24084.379970 eV Total energy + Delta-G solvation = -3889.747137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.21018 -38.41842 -37.15803 -36.21722 -35.35885 -34.78891 -32.52889 -31.19834 -30.80486 -29.94056 -28.82513 -27.37351 -25.81672 -23.41022 -22.58793 -22.35924 -20.71572 -19.11157 -18.48566 -17.16847 -16.95919 -16.86926 -16.60381 -16.28714 -15.96336 -15.46291 -15.26381 -14.72502 -14.47407 -14.41310 -14.01400 -13.65558 -13.54684 -13.35174 -13.19885 -13.00303 -12.78686 -12.43240 -12.31925 -12.25518 -12.23099 -12.16686 -12.07121 -11.88307 -11.57250 -11.41582 -11.28338 -11.02925 -10.91846 -10.75351 -10.61094 -10.49612 -10.10602 -9.55010 -9.27231 -8.83734 -8.58128 -8.49412 -7.72482 -6.07052 -4.05641 -0.27319 1.36088 1.47316 2.50588 3.23063 3.27377 3.34878 3.38170 3.40152 3.73629 3.75154 3.89572 4.39804 4.40168 4.41111 4.44416 4.65366 4.79947 4.83767 4.99486 5.04484 5.11907 5.22954 5.24527 5.26824 5.30091 5.42278 5.53467 5.59457 5.63404 5.74448 5.79764 5.99347 6.02631 6.12113 6.13364 6.49436 6.59986 6.61784 6.68176 6.94803 7.05115 7.30689 7.61700 8.20091 8.47853 8.89764 8.98271 9.52934 11.06428 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003633 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.827588 B = 7705.630142 C = 9000.759947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.215 3.785 4 C -0.526 4.526 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.515 3.485 13 O -0.531 6.531 14 C -0.060 4.060 15 H 0.098 0.902 16 C -0.091 4.091 17 C -0.608 4.608 18 S 2.420 3.580 19 C -0.659 4.659 20 O -0.939 6.939 21 O -0.935 6.935 22 C -0.072 4.072 23 C -0.100 4.100 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -20.787 -6.935 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C 0.095 3.905 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.300 3.700 13 O -0.407 6.407 14 C -0.083 4.083 15 H 0.116 0.884 16 C -0.130 4.130 17 C -0.737 4.737 18 S 2.602 3.398 19 C -0.808 4.808 20 O -0.936 6.936 21 O -0.932 6.932 22 C -0.072 4.072 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.686 -20.562 -7.053 24.223 hybrid contribution -0.778 0.689 -0.168 1.053 sum -11.465 -19.873 -7.222 24.052 Atomic orbital electron populations 1.21777 0.81142 1.03571 1.00130 1.47793 1.06189 1.06991 1.71490 1.19698 0.92424 0.79917 0.98473 1.21309 1.36866 1.07073 0.91221 0.90780 1.24861 0.95259 0.97380 0.95549 1.69897 1.41535 1.23493 1.18660 0.86871 0.78915 0.80792 0.83297 1.20143 1.20926 1.18840 1.20016 0.87865 0.84512 0.77586 1.90689 1.14023 1.86767 1.49227 1.20305 0.99793 0.93614 0.94552 0.88360 1.21166 0.97824 0.91044 1.02919 1.30353 1.14991 1.13844 1.14522 1.07891 0.77772 0.78155 0.76029 1.30301 1.17975 1.20869 1.11613 1.93605 1.81924 1.79462 1.38608 1.93615 1.50900 1.82460 1.66264 1.19420 0.93608 0.99519 0.94685 1.21204 0.99963 0.97158 0.93474 1.21171 0.96382 0.99519 0.96204 1.21147 0.93117 1.00315 0.99382 1.21055 0.99231 0.99841 0.93855 1.20998 0.95099 1.00367 0.96913 0.93680 0.91980 0.90352 0.94163 0.95628 0.92596 0.89343 0.88676 0.84679 0.84811 0.85412 0.85409 0.85371 0.85226 0.85924 0.86272 0.86170 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.60 59.85 0.57 1.75 16 2 N -0.59 -12.11 2.86 -182.96 -0.52 -12.64 16 3 C 0.22 5.28 4.17 -5.20 -0.02 5.26 16 4 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 8 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.51 10.27 6.48 -10.98 -0.07 10.19 16 13 O -0.53 -12.84 15.90 5.56 0.09 -12.75 16 14 C -0.06 -0.84 1.60 -92.92 -0.15 -0.98 16 15 H 0.10 1.06 6.74 -51.93 -0.35 0.71 16 16 C -0.09 -1.14 4.03 -26.73 -0.11 -1.25 16 17 C -0.61 -4.63 5.62 37.16 0.21 -4.42 16 18 S 2.42 20.49 5.36 -107.50 -0.58 19.92 16 19 C -0.66 -2.74 10.62 101.05 1.07 -1.67 16 20 O -0.94 -11.59 18.10 -57.83 -1.05 -12.64 16 21 O -0.94 -11.89 18.10 -57.83 -1.05 -12.93 16 22 C -0.07 -0.98 3.48 -104.63 -0.36 -1.34 16 23 C -0.10 -1.49 8.89 -39.58 -0.35 -1.85 16 24 C -0.11 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 26 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.12 -1.31 8.35 -39.58 -0.33 -1.64 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.81 4.67 -51.94 -0.24 0.57 16 30 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 31 H 0.04 1.06 6.56 -51.93 -0.34 0.72 16 32 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 36 H 0.13 0.84 7.38 -51.93 -0.38 0.46 16 37 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 39 H 0.13 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.13 2.10 7.17 -52.49 -0.38 1.72 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.12 1.07 7.30 -52.48 -0.38 0.68 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -40.92 382.38 -9.04 -49.96 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.63 Total: 0.43 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.17 Total: -14.97 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.25 Total: -39.80 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.00 Total: -38.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 20.49 SS G_CDS: -0.58 Total: 19.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.92 -9.04 -49.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279306519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.082 kcal (2) G-P(sol) polarization free energy of solvation -40.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds