Wall clock time and date at job start Tue Mar 31 2020 23:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00098 * 2 1 4 4 C 1.50699 * 109.47156 * 90.00239 * 3 2 1 5 5 H 1.07996 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99961 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99828 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00011 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47050 * 90.00155 * 8 6 4 10 10 H 1.48499 * 109.47009 * 209.99993 * 8 6 4 11 11 H 1.48503 * 109.47394 * 329.99914 * 8 6 4 12 12 C 1.34776 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99981 * 185.28004 * 12 2 1 14 14 C 1.50705 * 120.00088 * 5.27838 * 12 2 1 15 15 H 1.09006 * 109.47040 * 30.54821 * 14 12 2 16 16 C 1.52996 * 109.47265 * 150.54826 * 14 12 2 17 17 C 1.53000 * 109.47197 * 184.99803 * 16 14 12 18 18 S 1.81400 * 109.47108 * 179.97438 * 17 16 14 19 19 C 1.81397 * 101.92117 * 180.02562 * 18 17 16 20 20 O 1.42097 * 108.57907 * 294.49073 * 18 17 16 21 21 O 1.42101 * 108.57515 * 65.51810 * 18 17 16 22 22 C 1.50697 * 109.47253 * 270.55353 * 14 12 2 23 23 C 1.38237 * 119.99787 * 293.76140 * 22 14 12 24 24 C 1.38238 * 120.00076 * 179.78759 * 23 22 14 25 25 C 1.38231 * 119.99693 * 0.44081 * 24 23 22 26 26 C 1.38232 * 120.00159 * 359.80851 * 25 24 23 27 27 C 1.38232 * 120.00330 * 114.03306 * 22 14 12 28 28 H 1.09002 * 109.47347 * 95.16264 * 1 2 3 29 29 H 1.08988 * 109.47351 * 215.16322 * 1 2 3 30 30 H 1.09005 * 109.46928 * 335.16814 * 1 2 3 31 31 H 1.09000 * 109.47197 * 209.99894 * 3 2 1 32 32 H 1.09001 * 109.47137 * 330.00015 * 3 2 1 33 33 H 0.97001 * 120.00350 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47403 * 305.00629 * 16 14 12 35 35 H 1.09001 * 109.47003 * 65.00462 * 16 14 12 36 36 H 1.08991 * 109.47488 * 300.00337 * 17 16 14 37 37 H 1.09001 * 109.46607 * 60.00416 * 17 16 14 38 38 H 1.09000 * 109.47341 * 60.00034 * 19 18 17 39 39 H 1.09002 * 109.47438 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47192 * 300.00485 * 19 18 17 41 41 H 1.07998 * 120.00197 * 359.97438 * 23 22 14 42 42 H 1.07995 * 119.99841 * 180.27188 * 24 23 22 43 43 H 1.08002 * 119.99777 * 179.83148 * 25 24 23 44 44 H 1.08004 * 120.00055 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00040 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.3467 3.2567 2.9126 8 14 3.7352 3.9279 0.2529 9 1 2.6842 4.9069 -0.1241 10 1 4.9632 4.6540 0.6650 11 1 4.0416 3.0579 -0.9109 12 6 2.1389 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0961 14 6 1.3901 -2.4695 -0.1212 15 1 0.4863 -2.3157 -0.7109 16 6 2.2787 -3.5067 -0.8107 17 6 1.4779 -4.7891 -1.0454 18 16 2.5312 -6.0185 -1.8636 19 6 1.3988 -7.4248 -2.0391 20 8 2.8623 -5.5401 -3.1600 21 8 3.5749 -6.3857 -0.9720 22 6 1.0155 -2.9627 1.2526 23 6 2.0015 -3.3521 2.1399 24 6 1.6581 -3.8004 3.4016 25 6 0.3283 -3.8679 3.7729 26 6 -0.6579 -3.4834 2.8840 27 6 -0.3144 -3.0311 1.6237 28 1 -0.3634 -0.0925 -1.0235 29 1 -0.3633 -0.8400 0.5918 30 1 -0.3633 0.9327 0.4316 31 1 3.1499 1.1383 -0.5138 32 1 1.6084 2.0283 -0.5138 33 1 3.8235 4.0826 3.0900 34 1 2.6222 -3.1126 -1.7671 35 1 3.1388 -3.7262 -0.1782 36 1 1.1345 -5.1832 -0.0890 37 1 0.6177 -4.5696 -1.6779 38 1 0.5409 -7.1275 -2.6421 39 1 1.9174 -8.2503 -2.5266 40 1 1.0577 -7.7418 -1.0535 41 1 3.0402 -3.3033 1.8483 42 1 2.4287 -4.1005 4.0963 43 1 0.0599 -4.2207 4.7578 44 1 -1.6969 -3.5358 3.1742 45 1 -1.0849 -2.7306 0.9291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279306519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:27 Heat of formation + Delta-G solvation = -107.812168 kcal Electronic energy + Delta-G solvation = -27975.504722 eV Core-core repulsion = 24084.379970 eV Total energy + Delta-G solvation = -3891.124752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47004 -39.66329 -37.95560 -37.02286 -36.78577 -36.08689 -34.68349 -32.16111 -31.72940 -30.61992 -30.34722 -28.50784 -27.24899 -24.81155 -23.96489 -23.29444 -21.98691 -19.99790 -19.68148 -19.16516 -18.15364 -18.01711 -17.59274 -17.05944 -16.95407 -16.77404 -16.48199 -16.06350 -15.72063 -15.57179 -15.28938 -14.84654 -14.35973 -14.27554 -14.15466 -13.94436 -13.86112 -13.76533 -13.61165 -13.52737 -13.32060 -13.22082 -13.08392 -12.99815 -12.94071 -12.79486 -12.41651 -12.28839 -12.08722 -12.03116 -11.85515 -11.78045 -11.71769 -11.32474 -10.83783 -10.76409 -9.79782 -9.58499 -9.39885 -8.35447 -6.40358 -0.89084 0.38054 0.51440 1.29343 1.34832 1.45319 1.74473 1.93881 2.26794 2.29773 2.79919 2.87479 2.98724 3.16501 3.49590 3.62091 3.78680 3.98101 4.00377 4.08764 4.16101 4.19875 4.27848 4.31172 4.38048 4.43278 4.59366 4.63645 4.65261 4.72609 4.77334 4.83078 4.94103 4.96944 5.01689 5.07031 5.10873 5.17123 5.44446 5.57136 5.60074 5.64714 5.68093 6.12392 6.22200 6.60666 6.67048 7.19750 7.38672 8.81876 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003633 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.827588 B = 7705.630142 C = 9000.759947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.222 3.778 4 C -0.533 4.533 5 H 0.023 0.977 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.247 1.247 10 H -0.283 1.283 11 H -0.257 1.257 12 C 0.501 3.499 13 O -0.592 6.592 14 C -0.045 4.045 15 H 0.144 0.856 16 C -0.100 4.100 17 C -0.594 4.594 18 S 2.409 3.591 19 C -0.627 4.627 20 O -0.989 6.989 21 O -0.995 6.995 22 C -0.085 4.085 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.108 4.108 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.154 0.846 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 -21.991 -8.775 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.100 3.900 4 C -0.571 4.571 5 H 0.042 0.958 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.171 1.171 10 H -0.209 1.209 11 H -0.181 1.181 12 C 0.289 3.711 13 O -0.472 6.472 14 C -0.067 4.067 15 H 0.162 0.838 16 C -0.138 4.138 17 C -0.724 4.724 18 S 2.598 3.402 19 C -0.781 4.781 20 O -0.986 6.986 21 O -0.993 6.993 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.135 4.135 27 C -0.126 4.126 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.621 -21.755 -8.900 28.223 hybrid contribution 0.679 0.962 0.553 1.301 sum -14.941 -20.793 -8.348 26.931 Atomic orbital electron populations 1.22133 0.77572 1.04169 1.03394 1.47939 1.08508 1.05708 1.71249 1.19359 0.92690 0.82725 0.95246 1.21526 1.36729 1.06536 0.92349 0.95819 1.25887 0.95285 0.99031 0.98682 1.70060 1.42824 1.24450 1.21336 0.85692 0.78856 0.78989 0.79294 1.17117 1.20880 1.18113 1.21218 0.87649 0.86357 0.75847 1.90650 1.17074 1.87846 1.51655 1.20300 1.00516 0.90009 0.95869 0.83844 1.21128 0.97744 0.93471 1.01504 1.30230 1.15180 1.10596 1.16360 1.07740 0.78522 0.79556 0.74399 1.30021 1.16892 1.17065 1.14093 1.93540 1.83665 1.81136 1.40270 1.93544 1.54924 1.83562 1.67244 1.19448 0.94576 1.00414 0.94109 1.21157 0.99006 0.99671 0.95229 1.21330 0.97949 1.00282 0.95701 1.21502 0.92228 0.99500 1.00797 1.21532 1.00742 0.97986 0.93200 1.21406 0.94373 0.98938 0.97853 0.89152 0.89646 0.91339 0.96548 0.92937 0.92311 0.90451 0.92075 0.82744 0.80091 0.82002 0.84577 0.82775 0.88860 0.85869 0.83821 0.82496 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 9.60 127.77 1.23 3.09 16 2 N -0.60 -24.54 2.86 -851.14 -2.43 -26.97 16 3 C 0.22 11.05 4.17 85.63 0.36 11.41 16 4 C -0.53 -32.24 9.94 25.60 0.25 -31.98 16 5 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 6 C 0.01 0.54 5.47 84.66 0.46 1.00 16 7 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 8 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 9 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 12 C 0.50 20.60 6.48 87.66 0.57 21.17 16 13 O -0.59 -31.06 15.90 -3.03 -0.05 -31.11 16 14 C -0.04 -1.21 1.60 -12.29 -0.02 -1.23 16 15 H 0.14 2.45 6.74 -2.38 -0.02 2.43 16 16 C -0.10 -2.59 4.03 30.59 0.12 -2.46 16 17 C -0.59 -7.74 5.62 71.98 0.40 -7.34 16 18 S 2.41 39.94 5.36 -56.49 -0.30 39.63 16 19 C -0.63 -2.61 10.62 113.37 1.20 -1.41 16 20 O -0.99 -24.99 18.10 -127.37 -2.30 -27.30 16 21 O -1.00 -27.34 18.10 -127.37 -2.31 -29.65 16 22 C -0.08 -2.22 3.48 -19.87 -0.07 -2.29 16 23 C -0.13 -4.22 8.89 22.27 0.20 -4.02 16 24 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 25 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 26 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 27 C -0.11 -1.99 8.35 22.27 0.19 -1.80 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.88 4.67 -2.39 -0.01 1.86 16 30 H 0.07 2.00 8.03 -2.38 -0.02 1.98 16 31 H 0.02 0.89 6.56 -2.39 -0.02 0.88 16 32 H 0.05 2.33 7.50 -2.39 -0.02 2.31 16 33 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.97 6.76 -2.39 -0.02 1.96 16 36 H 0.15 1.46 7.38 -2.39 -0.02 1.45 16 37 H 0.18 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.09 3.54 7.17 -2.91 -0.02 3.52 16 42 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.16 1.67 7.30 -2.91 -0.02 1.65 16 Total: -1.00 -101.38 382.38 1.29 -100.09 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.93 Total: 12.36 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 5.57 Total: -23.43 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -2.13 Total: -87.89 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -4.66 Total: -88.05 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Atomic # 16 Polarization: 39.94 SS G_CDS: -0.30 Total: 39.63 kcal Total: -101.38 1.29 -100.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279306519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.721 kcal (2) G-P(sol) polarization free energy of solvation -101.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds