Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38722 * 120.05728 * 359.72917 * 4 3 2 6 6 C 1.38150 * 119.94161 * 179.74227 * 5 4 3 7 7 C 1.38261 * 120.05672 * 0.50783 * 6 5 4 8 8 C 1.50696 * 119.94689 * 179.74644 * 7 6 5 9 9 H 1.08997 * 115.55256 * 154.30331 * 8 7 6 10 10 C 1.53001 * 117.49791 * 8.62476 * 8 7 6 11 11 C 1.52994 * 60.00267 * 252.51256 * 10 8 7 12 12 H 1.09001 * 117.49855 * 107.48731 * 11 10 8 13 13 N 1.46501 * 117.50118 * 252.50942 * 11 10 8 14 14 S 1.65603 * 120.00306 * 213.62279 * 13 11 10 15 15 O 1.42091 * 104.27884 * 181.06957 * 14 13 11 16 16 O 1.42100 * 104.27587 * 308.93038 * 14 13 11 17 17 C 1.81404 * 104.44559 * 64.99954 * 14 13 11 18 18 C 1.53007 * 109.46560 * 180.02562 * 17 14 13 19 19 C 1.50704 * 109.46775 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99945 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00343 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99930 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47386 * 90.00048 * 23 21 19 25 25 H 1.48505 * 109.47022 * 210.00266 * 23 21 19 26 26 H 1.48493 * 109.47178 * 329.99730 * 23 21 19 27 27 C 1.38268 * 120.10988 * 359.76619 * 7 6 5 28 28 C 1.38139 * 120.05525 * 359.97438 * 27 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08006 * 120.03385 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.97088 * 180.27367 * 6 5 4 36 36 H 1.08999 * 117.50269 * 0.02562 * 10 8 7 37 37 H 1.09000 * 117.49788 * 145.02169 * 10 8 7 38 38 H 0.96995 * 119.99859 * 33.62159 * 13 11 10 39 39 H 1.09001 * 109.47385 * 300.00014 * 17 14 13 40 40 H 1.08993 * 109.47310 * 60.00362 * 17 14 13 41 41 H 1.08996 * 109.47203 * 299.99473 * 18 17 14 42 42 H 1.08993 * 109.47235 * 60.00045 * 18 17 14 43 43 H 0.97000 * 120.00614 * 179.97438 * 22 21 19 44 44 H 1.08000 * 119.96731 * 179.97438 * 27 7 6 45 45 H 1.08005 * 120.02930 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1997 0.4260 0.0067 6 6 5.5689 0.6096 0.0019 7 6 6.0962 1.8878 0.0015 8 6 7.5902 2.0852 0.0020 9 1 7.9403 3.0251 -0.4247 10 6 8.4664 0.8475 -0.2006 11 6 8.3790 1.5055 1.1778 12 1 7.8173 0.9813 1.9510 13 7 9.5473 2.2562 1.6444 14 16 9.9257 2.2814 3.2564 15 8 11.0773 3.1102 3.3332 16 8 8.7120 2.6526 3.8955 17 6 10.3515 0.5622 3.6483 18 6 10.7237 0.4537 5.1284 19 6 11.0780 -0.9745 5.4539 20 1 11.0410 -1.7293 4.6824 21 6 11.4494 -1.3174 6.7366 22 7 11.7582 -2.5638 7.0208 23 14 11.5141 -0.0117 8.0709 24 1 10.1928 0.0754 8.7428 25 1 12.5536 -0.3738 9.0678 26 1 11.8477 1.3013 7.4628 27 6 5.2550 2.9851 0.0010 28 6 3.8852 2.8068 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5727 0.0116 35 1 6.2281 -0.2460 0.0022 36 1 7.9623 -0.1096 -0.3347 37 1 9.3932 0.9731 -0.7604 38 1 10.0993 2.7384 1.0091 39 1 9.4957 -0.0804 3.4412 40 1 11.1975 0.2489 3.0367 41 1 11.5793 1.0962 5.3359 42 1 9.8774 0.7669 5.7398 43 1 12.0198 -2.8051 7.9231 44 1 5.6693 3.9825 0.0011 45 1 3.2284 3.6642 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280735720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = -69.318919 kcal Electronic energy + Delta-G solvation = -26268.752159 eV Core-core repulsion = 22379.296599 eV Total energy + Delta-G solvation = -3889.455560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51077 -38.94179 -36.99687 -36.66407 -35.59356 -33.96325 -32.86094 -31.92119 -31.49555 -31.19144 -29.21441 -25.98704 -24.37951 -23.92019 -22.28648 -21.89000 -21.35493 -20.57795 -19.20067 -18.58395 -17.74408 -16.96343 -16.74701 -16.41602 -16.05595 -15.69642 -15.49143 -14.98288 -14.93320 -14.31355 -13.91279 -13.77378 -13.73517 -13.64805 -13.33101 -12.85677 -12.83086 -12.66117 -12.57371 -12.11437 -12.05721 -11.88833 -11.82347 -11.72733 -11.64399 -11.58030 -11.27029 -11.20887 -11.20106 -10.95443 -10.48879 -10.42094 -10.15255 -9.73037 -9.44676 -9.21650 -9.10888 -8.67293 -8.13614 -6.17597 -4.18921 0.61197 1.13784 1.17111 2.89353 2.91669 3.26103 3.33477 3.36262 3.37690 3.83862 4.12906 4.35040 4.36323 4.48223 4.53753 4.57007 4.63423 4.66230 4.69835 4.75638 4.85780 4.87041 5.04550 5.09164 5.13465 5.14653 5.32824 5.39009 5.46728 5.50176 5.54571 5.60493 5.63591 5.78782 5.82202 6.04298 6.08762 6.17472 6.26972 6.43745 6.54180 6.80608 6.89464 6.96810 7.16456 7.53646 8.35326 8.83423 9.42095 10.94725 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002467 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.304300 B =11347.567301 C =12561.313392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.124 3.876 5 C -0.204 4.204 6 C -0.080 4.080 7 C -0.086 4.086 8 C -0.118 4.118 9 H 0.117 0.883 10 C -0.183 4.183 11 C 0.103 3.897 12 H 0.138 0.862 13 N -1.095 6.095 14 S 2.591 3.409 15 O -0.965 6.965 16 O -0.962 6.962 17 C -0.581 4.581 18 C -0.008 4.008 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.070 4.070 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.414 0.586 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.266 0.734 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 6.518 -19.493 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.232 6.232 4 C 0.079 3.921 5 C -0.222 4.222 6 C -0.098 4.098 7 C -0.086 4.086 8 C -0.139 4.139 9 H 0.135 0.865 10 C -0.222 4.222 11 C -0.006 4.006 12 H 0.156 0.844 13 N -0.847 5.847 14 S 2.688 3.312 15 O -0.956 6.956 16 O -0.951 6.951 17 C -0.714 4.714 18 C -0.047 4.047 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.696 3.304 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.186 1.186 27 C -0.088 4.088 28 C -0.168 4.168 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.248 0.752 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.267 7.255 -18.646 26.428 hybrid contribution 0.469 -0.212 0.213 0.557 sum -16.798 7.043 -18.433 25.914 Atomic orbital electron populations 1.21778 0.92747 1.02899 1.03507 1.22787 0.95874 0.81986 1.01513 1.86060 1.19141 1.29324 1.88716 1.19000 0.82205 0.94214 0.96725 1.21205 0.94210 0.98058 1.08773 1.20890 0.94353 0.96966 0.97635 1.18992 0.93163 0.93136 1.03336 1.21475 0.89742 0.98902 1.03786 0.86530 1.23651 1.01776 0.97043 0.99748 1.21493 0.89132 0.97858 0.92144 0.84402 1.55409 1.36723 1.64290 1.28317 1.05649 0.74299 0.78843 0.72402 1.93566 1.51539 1.65743 1.84716 1.93570 1.45848 1.81990 1.73736 1.30300 1.11386 1.20410 1.09287 1.19421 0.97359 1.00995 0.86940 1.20841 1.46765 0.91554 0.96633 0.90401 1.24987 0.94297 0.95363 0.98494 1.69877 1.45581 1.17071 1.20826 0.86923 0.78627 0.82788 0.82108 1.19666 1.20764 1.18616 1.20785 0.91926 0.98805 0.97309 1.20401 0.95115 0.94836 1.06419 0.91455 0.91592 0.90335 0.92055 0.91860 0.85453 0.85314 0.87464 0.87685 0.75245 0.85714 0.85399 0.94906 0.95332 0.92377 0.85219 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.24 10.14 -19.44 -0.20 -3.44 16 4 C 0.12 1.32 6.69 -39.22 -0.26 1.05 16 5 C -0.20 -1.98 9.04 -39.43 -0.36 -2.33 16 6 C -0.08 -0.78 9.29 -39.61 -0.37 -1.15 16 7 C -0.09 -0.87 5.61 -104.60 -0.59 -1.46 16 8 C -0.12 -1.11 5.97 -91.77 -0.55 -1.66 16 9 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 10 C -0.18 -1.51 9.78 -26.73 -0.26 -1.77 16 11 C 0.10 1.11 5.98 -67.93 -0.41 0.70 16 12 H 0.14 1.54 8.11 -51.93 -0.42 1.12 16 13 N -1.09 -12.92 5.93 -4.89 -0.03 -12.95 16 14 S 2.59 42.53 5.44 -107.50 -0.58 41.95 16 15 O -0.97 -18.50 18.08 -57.54 -1.04 -19.54 16 16 O -0.96 -18.66 17.82 -57.54 -1.03 -19.68 16 17 C -0.58 -10.29 6.01 37.16 0.22 -10.07 16 18 C -0.01 -0.18 4.05 -27.88 -0.11 -0.30 16 19 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 20 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 23 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 27 C -0.07 -0.71 9.73 -39.61 -0.39 -1.09 16 28 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 33 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 34 H 0.13 0.98 6.30 -52.48 -0.33 0.65 16 35 H 0.13 1.02 6.01 -52.48 -0.32 0.70 16 36 H 0.11 0.77 6.17 -51.93 -0.32 0.45 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.41 3.95 8.92 -34.47 -0.31 3.64 16 39 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 40 H 0.13 2.06 8.14 -51.93 -0.42 1.64 16 41 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 42 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -35.92 387.59 -10.88 -46.80 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.65 Total: 3.00 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -3.30 Total: -32.58 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.74 Total: -39.09 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -2.26 Total: -42.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 42.53 SS G_CDS: -0.58 Total: 41.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.92 -10.88 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280735720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.520 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds