Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38722 * 120.05728 * 359.72917 * 4 3 2 6 6 C 1.38150 * 119.94161 * 179.74227 * 5 4 3 7 7 C 1.38261 * 120.05672 * 0.50783 * 6 5 4 8 8 C 1.50696 * 119.94689 * 179.74644 * 7 6 5 9 9 H 1.08997 * 115.55256 * 154.30331 * 8 7 6 10 10 C 1.53001 * 117.49791 * 8.62476 * 8 7 6 11 11 C 1.52994 * 60.00267 * 252.51256 * 10 8 7 12 12 H 1.09001 * 117.49855 * 107.48731 * 11 10 8 13 13 N 1.46501 * 117.50118 * 252.50942 * 11 10 8 14 14 S 1.65603 * 120.00306 * 213.62279 * 13 11 10 15 15 O 1.42091 * 104.27884 * 181.06957 * 14 13 11 16 16 O 1.42100 * 104.27587 * 308.93038 * 14 13 11 17 17 C 1.81404 * 104.44559 * 64.99954 * 14 13 11 18 18 C 1.53007 * 109.46560 * 180.02562 * 17 14 13 19 19 C 1.50704 * 109.46775 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99945 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00343 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99930 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47386 * 90.00048 * 23 21 19 25 25 H 1.48505 * 109.47022 * 210.00266 * 23 21 19 26 26 H 1.48493 * 109.47178 * 329.99730 * 23 21 19 27 27 C 1.38268 * 120.10988 * 359.76619 * 7 6 5 28 28 C 1.38139 * 120.05525 * 359.97438 * 27 7 6 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 34 34 H 1.08006 * 120.03385 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.97088 * 180.27367 * 6 5 4 36 36 H 1.08999 * 117.50269 * 0.02562 * 10 8 7 37 37 H 1.09000 * 117.49788 * 145.02169 * 10 8 7 38 38 H 0.96995 * 119.99859 * 33.62159 * 13 11 10 39 39 H 1.09001 * 109.47385 * 300.00014 * 17 14 13 40 40 H 1.08993 * 109.47310 * 60.00362 * 17 14 13 41 41 H 1.08996 * 109.47203 * 299.99473 * 18 17 14 42 42 H 1.08993 * 109.47235 * 60.00045 * 18 17 14 43 43 H 0.97000 * 120.00614 * 179.97438 * 22 21 19 44 44 H 1.08000 * 119.96731 * 179.97438 * 27 7 6 45 45 H 1.08005 * 120.02930 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1997 0.4260 0.0067 6 6 5.5689 0.6096 0.0019 7 6 6.0962 1.8878 0.0015 8 6 7.5902 2.0852 0.0020 9 1 7.9403 3.0251 -0.4247 10 6 8.4664 0.8475 -0.2006 11 6 8.3790 1.5055 1.1778 12 1 7.8173 0.9813 1.9510 13 7 9.5473 2.2562 1.6444 14 16 9.9257 2.2814 3.2564 15 8 11.0773 3.1102 3.3332 16 8 8.7120 2.6526 3.8955 17 6 10.3515 0.5622 3.6483 18 6 10.7237 0.4537 5.1284 19 6 11.0780 -0.9745 5.4539 20 1 11.0410 -1.7293 4.6824 21 6 11.4494 -1.3174 6.7366 22 7 11.7582 -2.5638 7.0208 23 14 11.5141 -0.0117 8.0709 24 1 10.1928 0.0754 8.7428 25 1 12.5536 -0.3738 9.0678 26 1 11.8477 1.3013 7.4628 27 6 5.2550 2.9851 0.0010 28 6 3.8852 2.8068 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5727 0.0116 35 1 6.2281 -0.2460 0.0022 36 1 7.9623 -0.1096 -0.3347 37 1 9.3932 0.9731 -0.7604 38 1 10.0993 2.7384 1.0091 39 1 9.4957 -0.0804 3.4412 40 1 11.1975 0.2489 3.0367 41 1 11.5793 1.0962 5.3359 42 1 9.8774 0.7669 5.7398 43 1 12.0198 -2.8051 7.9231 44 1 5.6693 3.9825 0.0011 45 1 3.2284 3.6642 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280735720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = -94.059719 kcal Electronic energy + Delta-G solvation = -26269.825000 eV Core-core repulsion = 22379.296599 eV Total energy + Delta-G solvation = -3890.528401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21486 -39.66950 -38.17414 -37.66734 -37.03137 -35.87995 -33.70302 -33.45755 -32.54575 -31.89512 -29.93682 -27.86935 -24.97013 -24.62430 -23.19481 -23.09342 -22.52873 -21.31401 -20.43853 -19.43784 -19.25569 -18.51208 -17.68067 -17.03328 -17.02373 -16.95103 -16.45192 -16.34257 -16.19205 -15.62034 -15.25093 -14.82045 -14.58780 -14.44530 -14.32188 -14.05597 -13.80085 -13.56301 -13.38263 -13.32263 -13.20108 -13.13032 -13.06046 -12.98516 -12.88859 -12.69536 -12.59451 -12.27001 -12.22606 -11.93857 -11.84491 -11.68826 -11.59976 -11.25382 -11.12701 -10.83565 -10.09659 -9.93141 -8.89011 -8.35679 -6.40965 -0.71903 0.40307 0.41868 1.32454 1.34512 1.44297 1.75333 2.28375 2.30117 2.61282 2.76361 2.98454 3.15836 3.26123 3.69360 3.83568 3.86255 3.88552 3.97307 4.01716 4.04580 4.05518 4.14978 4.18339 4.34684 4.37821 4.44392 4.50414 4.59227 4.70431 4.87893 4.93715 4.95273 5.09297 5.11650 5.12677 5.13812 5.20890 5.28295 5.37786 5.44476 5.48682 5.70343 5.84743 6.10261 6.17964 6.47789 6.65266 7.23337 8.79733 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002467 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.304300 B =11347.567301 C =12561.313392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.109 3.891 5 C -0.210 4.210 6 C -0.087 4.087 7 C -0.099 4.099 8 C -0.114 4.114 9 H 0.128 0.872 10 C -0.162 4.162 11 C 0.072 3.928 12 H 0.131 0.869 13 N -1.076 6.076 14 S 2.626 3.374 15 O -0.992 6.992 16 O -0.991 6.991 17 C -0.586 4.586 18 C -0.019 4.019 19 C -0.525 4.525 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.940 5.940 23 Si 0.924 3.076 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.249 1.249 27 C -0.079 4.079 28 C -0.164 4.164 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.428 0.572 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.269 0.731 44 H 0.142 0.858 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.467 7.223 -20.729 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.064 3.936 5 C -0.229 4.229 6 C -0.105 4.105 7 C -0.099 4.099 8 C -0.134 4.134 9 H 0.146 0.854 10 C -0.201 4.201 11 C -0.036 4.036 12 H 0.149 0.851 13 N -0.834 5.834 14 S 2.722 3.278 15 O -0.982 6.982 16 O -0.980 6.980 17 C -0.718 4.718 18 C -0.058 4.058 19 C -0.564 4.564 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.580 5.580 23 Si 0.747 3.253 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.173 1.173 27 C -0.097 4.097 28 C -0.183 4.183 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.265 0.735 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.160 0.840 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.689 7.958 -19.892 27.784 hybrid contribution 0.518 -0.493 0.464 0.852 sum -17.172 7.465 -19.428 26.982 Atomic orbital electron populations 1.21806 0.91585 1.04123 1.03148 1.23037 0.96857 0.80890 1.02173 1.86044 1.19016 1.31166 1.88734 1.19232 0.82657 0.94699 0.97042 1.21448 0.94343 0.98672 1.08441 1.21162 0.94657 0.97490 0.97148 1.19195 0.93728 0.93406 1.03608 1.21522 0.89289 1.00118 1.02490 0.85395 1.23783 1.02061 0.97162 0.97045 1.21706 0.89265 0.99428 0.93221 0.85093 1.54850 1.37261 1.64569 1.26712 1.04348 0.73025 0.77345 0.73104 1.93524 1.52722 1.66228 1.85748 1.93534 1.46984 1.82095 1.75427 1.30290 1.12784 1.22796 1.05883 1.19388 0.97410 0.98113 0.90888 1.21176 1.45844 0.93323 0.96009 0.93074 1.25865 0.94256 0.97361 1.01105 1.70003 1.47269 1.19097 1.21608 0.86041 0.79229 0.80603 0.79461 1.18637 1.20009 1.17299 1.21020 0.91934 0.99615 0.97147 1.20617 0.95597 0.95255 1.06829 0.92078 0.91669 0.88302 0.90949 0.91570 0.83836 0.83601 0.86151 0.86039 0.73550 0.84137 0.83900 0.94958 0.95105 0.92169 0.83981 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.04 0.59 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.70 10.14 -92.48 -0.94 -7.64 16 4 C 0.11 2.26 6.69 22.50 0.15 2.41 16 5 C -0.21 -3.84 9.04 22.36 0.20 -3.63 16 6 C -0.09 -1.53 9.29 22.25 0.21 -1.32 16 7 C -0.10 -1.85 5.61 -19.85 -0.11 -1.96 16 8 C -0.11 -1.84 5.97 -11.54 -0.07 -1.91 16 9 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 10 C -0.16 -2.13 9.78 30.59 0.30 -1.83 16 11 C 0.07 1.38 5.98 44.99 0.27 1.65 16 12 H 0.13 2.71 8.11 -2.39 -0.02 2.69 16 13 N -1.08 -22.85 5.93 -169.39 -1.00 -23.86 16 14 S 2.63 82.04 5.44 -56.49 -0.31 81.74 16 15 O -0.99 -36.47 18.08 -127.65 -2.31 -38.78 16 16 O -0.99 -37.23 17.82 -127.65 -2.27 -39.51 16 17 C -0.59 -20.02 6.01 71.98 0.43 -19.59 16 18 C -0.02 -0.87 4.05 29.85 0.12 -0.75 16 19 C -0.52 -29.22 9.66 25.60 0.25 -28.98 16 20 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 21 C 0.01 0.73 5.47 84.65 0.46 1.19 16 22 N -0.94 -57.44 13.96 21.44 0.30 -57.14 16 23 Si 0.92 43.70 27.47 68.60 1.88 45.58 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 27 C -0.08 -1.51 9.73 22.25 0.22 -1.30 16 28 C -0.16 -3.33 9.99 22.36 0.22 -3.11 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.77 7.68 -2.39 -0.02 0.75 16 33 H 0.07 0.81 7.65 -2.39 -0.02 0.80 16 34 H 0.14 2.00 6.30 -2.91 -0.02 1.98 16 35 H 0.15 1.94 6.01 -2.91 -0.02 1.92 16 36 H 0.12 1.29 6.17 -2.39 -0.01 1.28 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.43 6.94 8.92 -96.75 -0.86 6.07 16 39 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 40 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 41 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 42 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -77.39 387.59 -0.78 -78.17 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.08 Total: 20.27 kcal Atomic # 6 Polarization: -62.63 SS G_CDS: 3.78 Total: -58.84 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -0.70 Total: -80.99 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -5.52 Total: -85.93 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Atomic # 16 Polarization: 82.04 SS G_CDS: -0.31 Total: 81.74 kcal Total: -77.39 -0.78 -78.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280735720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.892 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds