Wall clock time and date at job start Tue Mar 31 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47158 * 2 1 4 4 C 1.35898 * 117.00257 * 179.97438 * 3 2 1 5 5 C 1.38759 * 120.05302 * 0.02562 * 4 3 2 6 6 C 1.38115 * 119.94212 * 179.97438 * 5 4 3 7 7 C 1.38297 * 120.05871 * 359.74778 * 6 5 4 8 8 C 1.38245 * 120.10742 * 0.51174 * 7 6 5 9 9 S 1.76201 * 119.97294 * 179.76910 * 8 7 6 10 10 O 1.42094 * 106.40360 * 156.18065 * 9 8 7 11 11 O 1.42101 * 106.40061 * 23.25554 * 9 8 7 12 12 N 1.65602 * 107.21409 * 269.72339 * 9 8 7 13 13 C 1.46496 * 120.00281 * 90.00002 * 12 9 8 14 14 C 1.50706 * 109.47106 * 264.99512 * 13 12 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 C 1.46507 * 119.99575 * 269.99554 * 12 9 8 23 23 C 1.52998 * 109.46948 * 265.00178 * 22 12 9 24 24 C 1.53003 * 117.49745 * 243.74629 * 23 22 12 25 25 C 1.53005 * 117.49777 * 175.08712 * 23 22 12 26 26 C 1.38166 * 120.05786 * 359.48722 * 8 7 6 27 27 H 1.08998 * 109.47316 * 300.00447 * 1 2 3 28 28 H 1.09005 * 109.46733 * 60.00535 * 1 2 3 29 29 H 1.08995 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47316 * 239.99552 * 2 1 3 31 31 H 1.09005 * 109.46733 * 119.99465 * 2 1 3 32 32 H 1.07997 * 120.02671 * 359.95696 * 5 4 3 33 33 H 1.07996 * 119.97448 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.94608 * 180.27621 * 7 6 5 35 35 H 1.09001 * 109.47001 * 144.99803 * 13 12 9 36 36 H 1.09000 * 109.47574 * 25.00019 * 13 12 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47044 * 25.00454 * 22 12 9 39 39 H 1.09003 * 109.47057 * 145.00379 * 22 12 9 40 40 H 1.08997 * 115.55547 * 29.41875 * 23 22 12 41 41 H 1.08999 * 117.50006 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.49698 * 145.02265 * 24 23 22 43 43 H 1.08997 * 117.49844 * 214.97724 * 25 23 22 44 44 H 1.08999 * 117.49592 * 0.02562 * 25 23 22 45 45 H 1.07990 * 120.03156 * 180.23876 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4258 0.0005 6 6 5.5688 0.6094 0.0005 7 6 6.0962 1.8879 -0.0047 8 6 5.2551 2.9850 0.0007 9 16 5.9309 4.6123 0.0002 10 8 4.9308 5.4620 -0.5446 11 8 7.2391 4.5033 -0.5441 12 7 6.1189 5.0654 1.5819 13 6 7.3737 4.7793 2.2817 14 6 7.2404 3.4858 3.0435 15 1 6.3137 2.9321 3.0093 16 6 8.3013 3.0094 3.7840 17 7 9.4295 3.6839 3.8259 18 14 8.1362 1.4057 4.7276 19 1 8.5556 0.2756 3.8604 20 1 9.0001 1.4505 5.9347 21 1 6.7217 1.2162 5.1381 22 6 5.0303 5.7526 2.2812 23 6 5.2483 7.2649 2.2029 24 6 5.4857 8.0133 3.5161 25 6 4.1540 8.1671 2.7771 26 6 3.8850 2.8067 0.0007 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7886 -0.5728 0.0008 33 1 6.2280 -0.2460 0.0001 34 1 7.1669 2.0294 -0.0092 35 1 7.5948 5.5892 2.9768 36 1 8.1826 4.6921 1.5563 37 1 10.1760 3.3485 4.3466 38 1 4.0796 5.4978 1.8129 39 1 5.0158 5.4412 3.3257 40 1 5.7795 7.6183 1.3192 41 1 5.4870 7.4282 4.4358 42 1 6.1728 8.8593 3.4961 43 1 3.9656 9.1140 2.2713 44 1 3.2790 7.6831 3.2110 45 1 3.2284 3.6640 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282752544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:40 Heat of formation + Delta-G solvation = -79.880163 kcal Electronic energy + Delta-G solvation = -28193.000370 eV Core-core repulsion = 24303.086841 eV Total energy + Delta-G solvation = -3889.913530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19205 -38.88368 -38.58685 -38.30015 -36.92835 -36.39576 -34.36492 -32.96908 -32.28683 -30.55749 -29.67631 -27.05397 -25.33661 -24.29869 -23.74873 -23.13716 -22.97742 -21.67217 -20.32871 -19.30321 -18.60040 -18.28833 -17.57886 -17.39958 -17.08971 -17.05261 -16.90951 -16.27565 -16.07085 -15.46852 -14.98897 -14.80506 -14.56093 -14.49698 -14.39309 -14.11765 -13.55999 -13.52210 -13.42911 -13.20702 -13.19168 -13.12113 -12.98014 -12.76154 -12.70080 -12.59747 -12.38431 -12.27654 -12.25263 -12.00462 -11.77402 -11.71488 -11.63672 -11.21142 -10.74370 -10.56433 -10.44380 -9.78101 -9.35644 -8.14971 -6.27962 -0.60279 -0.23176 0.29298 1.41623 1.42563 1.52491 1.96664 2.14807 2.41663 2.48786 2.77676 3.00027 3.16872 3.35908 3.66778 3.81552 3.86439 3.99766 4.05676 4.09177 4.09989 4.18039 4.24906 4.26741 4.35726 4.39946 4.52437 4.70550 4.82967 4.86338 4.88708 4.94594 4.96386 5.00009 5.09862 5.11477 5.21464 5.25813 5.31988 5.33584 5.34567 5.51747 5.54210 5.75900 5.91868 6.12232 6.34025 6.83261 7.41661 8.93214 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.005150 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.349655 B = 5435.338638 C = 7064.857939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 O -0.328 6.328 4 C 0.103 3.897 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.063 4.063 8 C -0.636 4.636 9 S 2.695 3.305 10 O -0.978 6.978 11 O -0.991 6.991 12 N -0.980 5.980 13 C 0.261 3.739 14 C -0.540 4.540 15 H 0.065 0.935 16 C 0.017 3.983 17 N -0.925 5.925 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.157 3.843 23 C -0.191 4.191 24 C -0.178 4.178 25 C -0.153 4.153 26 C -0.072 4.072 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.028 0.972 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 -6.123 -4.572 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.242 6.242 4 C 0.057 3.943 5 C -0.168 4.168 6 C -0.119 4.119 7 C -0.083 4.083 8 C -0.725 4.725 9 S 2.788 3.212 10 O -0.968 6.968 11 O -0.982 6.982 12 N -0.818 5.818 13 C 0.138 3.862 14 C -0.579 4.579 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.565 5.565 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.032 3.968 23 C -0.211 4.211 24 C -0.215 4.215 25 C -0.190 4.190 26 C -0.092 4.092 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.146 0.854 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.031 -5.482 -5.216 17.727 hybrid contribution 0.580 -1.317 0.836 1.665 sum -15.451 -6.799 -4.379 17.440 Atomic orbital electron populations 1.21811 0.91247 1.04312 1.03229 1.23195 0.97191 0.80483 1.02676 1.86081 1.17619 1.31819 1.88711 1.18985 0.83432 0.93846 0.98029 1.21864 0.93820 0.99405 1.01666 1.21424 0.95540 0.97156 0.97817 1.20984 0.99765 0.92693 0.94816 1.30704 1.02701 1.23177 1.15876 1.01514 0.72603 0.74123 0.72955 1.93501 1.60888 1.65044 1.77381 1.93504 1.39462 1.87526 1.77662 1.57223 1.23813 1.70343 1.30381 1.18802 0.79549 0.95933 0.91919 1.21768 0.99331 1.07259 1.29548 0.91700 1.25695 0.94750 1.00391 0.97401 1.70060 1.04031 1.40397 1.41987 0.85659 0.78315 0.80140 0.78279 1.19648 1.20979 1.19015 1.20865 0.88038 0.89147 0.98771 1.22736 1.05963 0.94031 0.98379 1.23069 1.00365 1.02751 0.95306 1.23052 0.92515 1.00877 1.02585 1.20157 0.92482 0.97088 0.99512 0.91981 0.91766 0.87867 0.90437 0.90878 0.81203 0.82037 0.85381 0.95375 0.95999 0.92549 0.89423 0.89883 0.89432 0.88773 0.88596 0.87400 0.87198 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.33 -8.15 10.14 -92.40 -0.94 -9.09 16 4 C 0.10 2.96 6.69 22.51 0.15 3.11 16 5 C -0.15 -3.67 9.04 22.37 0.20 -3.47 16 6 C -0.10 -2.85 10.04 22.25 0.22 -2.63 16 7 C -0.06 -2.29 9.52 22.29 0.21 -2.08 16 8 C -0.64 -24.01 5.97 22.25 0.13 -23.87 16 9 S 2.70 113.55 5.65 -56.49 -0.32 113.24 16 10 O -0.98 -40.72 16.25 -128.00 -2.08 -42.80 16 11 O -0.99 -48.16 15.82 -128.00 -2.03 -50.18 16 12 N -0.98 -41.84 2.77 -519.84 -1.44 -43.28 16 13 C 0.26 13.31 5.43 85.64 0.47 13.77 16 14 C -0.54 -28.37 9.38 25.60 0.24 -28.13 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 16 C 0.02 0.93 5.46 84.65 0.46 1.40 16 17 N -0.93 -53.20 13.29 21.45 0.28 -52.91 16 18 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C 0.16 5.62 5.63 86.38 0.49 6.11 16 23 C -0.19 -6.26 6.01 -10.79 -0.06 -6.33 16 24 C -0.18 -5.08 10.18 30.62 0.31 -4.77 16 25 C -0.15 -3.77 10.26 30.62 0.31 -3.46 16 26 C -0.07 -2.42 9.46 22.37 0.21 -2.21 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.07 0.99 7.66 -2.38 -0.02 0.97 16 32 H 0.17 2.73 6.30 -2.91 -0.02 2.71 16 33 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.13 5.03 7.61 -2.91 -0.02 5.00 16 35 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 36 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 37 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.09 2.77 7.61 -2.39 -0.02 2.75 16 39 H 0.08 2.95 7.84 -2.39 -0.02 2.94 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 2.72 8.03 -2.39 -0.02 2.71 16 42 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.15 4.61 7.62 -2.92 -0.02 4.59 16 Total: -1.00 -69.45 390.10 0.97 -68.48 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.98 Total: 25.20 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 4.48 Total: -52.57 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -1.15 Total: -96.19 kcal Atomic # 8 Polarization: -97.03 SS G_CDS: -5.04 Total: -102.07 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 113.55 SS G_CDS: -0.32 Total: 113.24 kcal Total: -69.45 0.97 -68.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282752544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.398 kcal (2) G-P(sol) polarization free energy of solvation -69.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds