Wall clock time and date at job start Tue Mar 31 2020 23:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00463 * 2 1 4 4 N 1.46907 * 109.46984 * 125.14363 * 3 2 1 5 5 C 1.46903 * 110.99616 * 199.64701 * 4 3 2 6 6 C 1.50697 * 109.47421 * 66.04947 * 5 4 3 7 7 H 1.08002 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99924 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47001 * 89.99942 * 10 8 6 12 12 H 1.48496 * 109.47030 * 209.99925 * 10 8 6 13 13 H 1.48498 * 109.47137 * 330.00106 * 10 8 6 14 14 C 1.46894 * 110.99811 * 75.69236 * 4 3 2 15 15 C 1.53004 * 109.47076 * 199.68362 * 14 4 3 16 16 S 1.81399 * 109.47038 * 174.86208 * 15 14 4 17 17 O 1.42093 * 110.54437 * 68.37456 * 16 15 14 18 18 O 1.42104 * 110.54183 * 291.62439 * 16 15 14 19 19 C 1.76201 * 104.44843 * 180.02562 * 16 15 14 20 20 C 1.38282 * 119.97322 * 270.02098 * 19 16 15 21 21 C 1.38240 * 120.11575 * 180.02562 * 20 19 16 22 22 C 1.38174 * 120.05562 * 359.67788 * 21 20 19 23 23 C 1.38718 * 119.93657 * 0.57317 * 22 21 20 24 24 O 1.35898 * 120.04898 * 179.72293 * 23 22 21 25 25 C 1.42898 * 117.00620 * 359.72953 * 24 23 22 26 26 C 1.38125 * 119.97213 * 90.00044 * 19 16 15 27 27 H 1.08001 * 120.00308 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99473 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46739 * 5.14959 * 3 2 1 31 31 H 1.08994 * 109.47545 * 245.14438 * 3 2 1 32 32 H 1.09000 * 109.46832 * 186.04616 * 5 4 3 33 33 H 1.08999 * 109.47247 * 306.04433 * 5 4 3 34 34 H 0.97006 * 119.99718 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47179 * 79.68566 * 14 4 3 36 36 H 1.08999 * 109.47323 * 319.68813 * 14 4 3 37 37 H 1.08994 * 109.46677 * 54.86345 * 15 14 4 38 38 H 1.08996 * 109.46957 * 294.85880 * 15 14 4 39 39 H 1.08006 * 119.94321 * 359.97438 * 20 19 16 40 40 H 1.08004 * 119.97535 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.02873 * 180.30158 * 22 21 20 42 42 H 1.09001 * 109.46805 * 59.99817 * 25 24 23 43 43 H 1.08999 * 109.47478 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.46649 * 300.00253 * 25 24 23 45 45 H 1.07997 * 120.02724 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9989 1.3304 1.1326 5 6 3.4018 2.7065 1.4518 6 6 2.2078 3.4755 1.9556 7 1 1.2457 2.9907 2.0308 8 6 2.3437 4.7982 2.3207 9 7 3.5153 5.3884 2.2296 10 14 0.8634 5.7516 2.9446 11 1 0.7706 5.6119 4.4201 12 1 1.0140 7.1862 2.5917 13 1 -0.3712 5.2147 2.3180 14 6 4.1715 0.4868 0.8658 15 6 4.8599 0.1380 2.1870 16 16 6.2160 -1.0253 1.8734 17 8 7.2626 -0.3888 1.1532 18 8 5.7061 -2.2867 1.4630 19 6 6.9075 -1.3337 3.4644 20 6 7.9321 -0.5353 3.9389 21 6 8.4771 -0.7749 5.1865 22 6 7.9946 -1.8091 5.9655 23 6 6.9705 -2.6147 5.4896 24 8 6.4980 -3.6360 6.2515 25 6 7.1063 -3.8267 7.5304 26 6 6.4255 -2.3723 4.2368 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3588 2.1315 0.0922 31 1 2.6193 1.4037 -0.9324 32 1 4.1741 2.6898 2.2208 33 1 3.7922 3.1880 0.5552 34 1 3.6107 6.3191 2.4861 35 1 4.8685 1.0259 0.2242 36 1 3.8543 -0.4296 0.3683 37 1 4.1378 -0.3196 2.8631 38 1 5.2577 1.0459 2.6402 39 1 8.3077 0.2763 3.3334 40 1 9.2776 -0.1503 5.5547 41 1 8.4175 -1.9929 6.9421 42 1 6.9759 -2.9275 8.1325 43 1 6.6368 -4.6719 8.0337 44 1 8.1701 -4.0260 7.4006 45 1 5.6254 -2.9956 3.8658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292098908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:49 Heat of formation + Delta-G solvation = -73.061832 kcal Electronic energy + Delta-G solvation = -26954.721830 eV Core-core repulsion = 23065.103965 eV Total energy + Delta-G solvation = -3889.617865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17538 -39.00422 -38.50758 -38.22695 -37.08684 -34.97184 -34.48996 -32.48961 -32.00230 -31.35633 -29.02986 -28.22252 -26.33837 -24.93348 -24.10313 -23.53623 -22.10560 -20.51197 -20.27581 -19.40056 -18.58623 -17.65991 -17.56777 -17.28324 -17.09318 -16.86971 -16.72223 -16.51731 -16.13896 -15.75430 -15.70696 -14.97702 -14.79585 -14.66007 -14.42876 -14.06132 -13.93796 -13.62473 -13.53470 -13.34626 -13.25456 -13.21192 -12.90221 -12.89143 -12.68973 -12.58233 -12.37209 -12.35987 -12.21073 -11.97964 -11.90792 -11.61581 -11.58596 -11.21082 -10.59844 -10.45982 -10.23492 -9.41002 -9.09589 -8.19788 -6.28601 -1.05351 -0.30311 0.24801 1.42248 1.42474 1.48018 1.53776 1.79757 2.25958 2.32155 2.40801 2.78746 3.12641 3.14611 3.37889 3.61782 3.66481 3.82577 3.89434 4.05092 4.08461 4.13587 4.29636 4.34437 4.38312 4.39390 4.41709 4.53058 4.58765 4.70218 4.77388 4.90065 4.92501 4.94339 5.06092 5.10591 5.18744 5.22666 5.25629 5.49390 5.65694 5.78819 6.01189 6.04222 6.27531 6.29842 6.54095 6.86601 7.40464 8.91222 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.003106 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.840180 B = 9011.640803 C = 9929.678908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.078 3.922 4 N -0.526 5.526 5 C 0.200 3.800 6 C -0.521 4.521 7 H 0.063 0.937 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.051 3.949 15 C -0.584 4.584 16 S 2.518 3.482 17 O -0.964 6.964 18 O -0.958 6.958 19 C -0.623 4.623 20 C -0.079 4.079 21 C -0.098 4.098 22 C -0.151 4.151 23 C 0.097 3.903 24 O -0.333 6.333 25 C 0.014 3.986 26 C -0.077 4.077 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.019 0.981 33 H -0.034 1.034 34 H 0.264 0.736 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -16.776 8.728 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.170 4.170 3 C -0.050 4.050 4 N -0.251 5.251 5 C 0.074 3.926 6 C -0.560 4.560 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.189 1.189 14 C -0.079 4.079 15 C -0.715 4.715 16 S 2.701 3.299 17 O -0.961 6.961 18 O -0.955 6.955 19 C -0.712 4.712 20 C -0.098 4.098 21 C -0.116 4.116 22 C -0.170 4.170 23 C 0.051 3.949 24 O -0.247 6.247 25 C -0.080 4.080 26 C -0.096 4.096 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.037 0.963 33 H -0.016 1.016 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.679 -17.304 8.350 20.691 hybrid contribution -0.029 1.571 0.524 1.656 sum 7.650 -15.732 8.874 19.616 Atomic orbital electron populations 1.23934 0.95506 1.02397 1.00174 1.22921 0.96442 0.97468 1.00217 1.21252 0.95519 0.97015 0.91196 1.62090 1.13087 1.11865 1.38032 1.19547 0.95885 0.83430 0.93784 1.21425 0.96117 0.95617 1.42797 0.91883 1.25832 0.98821 0.98691 0.96008 1.70070 1.24977 1.12735 1.49422 0.85458 0.79496 0.77407 0.78720 1.19946 1.20955 1.18949 1.21890 0.93420 0.99418 0.93162 1.30261 1.16737 1.16537 1.08007 1.04636 0.75775 0.75211 0.74320 1.93523 1.54414 1.77949 1.70238 1.93518 1.81456 1.39855 1.80682 1.30224 1.11313 1.06311 1.23306 1.21213 0.93698 0.97932 0.96982 1.21510 0.99929 0.97179 0.93001 1.21959 0.96649 0.96002 1.02372 1.19174 0.94616 0.89550 0.91548 1.86087 1.60334 1.47236 1.31013 1.23447 0.99555 1.03977 0.81054 1.20294 1.00493 0.96627 0.92223 0.86227 0.89220 0.86343 0.90975 0.94531 0.96289 1.01631 0.92694 0.93994 0.88239 0.82414 0.84533 0.83321 0.81449 0.81330 0.91286 0.86204 0.91111 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.02 14.32 67.78 0.97 -4.05 16 2 C -0.15 -4.70 9.33 25.65 0.24 -4.47 16 3 C 0.08 2.96 5.24 85.55 0.45 3.41 16 4 N -0.53 -21.98 4.35 -905.36 -3.93 -25.91 16 5 C 0.20 10.25 4.55 85.56 0.39 10.64 16 6 C -0.52 -28.68 8.23 25.60 0.21 -28.47 16 7 H 0.06 3.42 7.31 -2.91 -0.02 3.40 16 8 C 0.00 0.27 5.46 84.66 0.46 0.73 16 9 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 10 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 14 C 0.05 1.77 4.81 86.31 0.42 2.18 16 15 C -0.58 -17.51 6.01 71.98 0.43 -17.08 16 16 S 2.52 72.17 5.16 -56.49 -0.29 71.88 16 17 O -0.96 -32.64 17.13 -127.65 -2.19 -34.83 16 18 O -0.96 -30.68 17.12 -127.65 -2.19 -32.87 16 19 C -0.62 -16.19 5.65 22.25 0.13 -16.06 16 20 C -0.08 -1.84 9.47 22.28 0.21 -1.63 16 21 C -0.10 -1.74 10.04 22.26 0.22 -1.52 16 22 C -0.15 -2.55 9.04 22.37 0.20 -2.35 16 23 C 0.10 2.12 6.69 22.51 0.15 2.27 16 24 O -0.33 -6.54 10.50 -92.40 -0.97 -7.51 16 25 C 0.01 0.13 9.81 113.37 1.11 1.24 16 26 C -0.08 -1.94 9.41 22.37 0.21 -1.73 16 27 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.09 2.58 7.84 -2.91 -0.02 2.55 16 29 H 0.12 3.25 7.27 -2.91 -0.02 3.22 16 30 H 0.07 3.07 6.23 -2.38 -0.01 3.05 16 31 H 0.04 1.34 8.00 -2.39 -0.02 1.32 16 32 H 0.02 1.02 6.72 -2.39 -0.02 1.01 16 33 H -0.03 -1.91 8.12 -2.39 -0.02 -1.93 16 34 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 35 H 0.04 1.49 8.00 -2.39 -0.02 1.47 16 36 H 0.10 2.95 6.81 -2.39 -0.02 2.93 16 37 H 0.16 4.23 8.14 -2.39 -0.02 4.21 16 38 H 0.14 4.23 6.95 -2.39 -0.02 4.21 16 39 H 0.15 3.25 7.57 -2.91 -0.02 3.23 16 40 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.17 1.57 6.30 -2.91 -0.02 1.55 16 42 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 45 H 0.15 3.61 7.57 -2.91 -0.02 3.59 16 Total: -1.00 -74.80 387.17 -0.47 -75.28 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.98 Total: 19.81 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 5.80 Total: -56.88 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.65 Total: -80.34 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -5.34 Total: -75.21 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 72.17 SS G_CDS: -0.29 Total: 71.88 kcal Total: -74.80 -0.47 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292098908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds