Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47068 * 2 1 4 4 O 1.42902 * 109.46922 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47417 * 240.00171 * 2 1 3 6 6 H 1.09005 * 109.49329 * 300.06575 * 5 2 1 7 7 C 1.53037 * 109.52348 * 60.14281 * 5 2 1 8 8 C 1.53040 * 109.53636 * 181.33527 * 7 5 2 9 9 C 1.53630 * 109.24254 * 298.51016 * 8 7 5 10 10 N 1.46933 * 108.54090 * 54.85921 * 9 8 7 11 11 S 1.65600 * 120.62938 * 126.36605 * 10 9 8 12 12 O 1.42101 * 106.39929 * 156.17795 * 11 10 9 13 13 O 1.42095 * 106.40199 * 23.26177 * 11 10 9 14 14 C 1.76191 * 107.21776 * 269.71815 * 11 10 9 15 15 C 1.38637 * 119.74909 * 90.00685 * 14 11 10 16 16 C 1.37619 * 120.25051 * 179.97438 * 15 14 11 17 17 C 1.40711 * 119.74558 * 0.02562 * 16 15 14 18 18 C 1.41396 * 120.24611 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99767 * 334.85377 * 18 17 16 20 20 C 1.39946 * 119.99971 * 154.85712 * 18 17 16 21 21 N 1.30815 * 119.99906 * 334.27512 * 20 18 17 22 22 Si 1.86803 * 119.99876 * 154.27924 * 20 18 17 23 23 H 1.48497 * 109.46802 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46860 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.46934 * 59.99619 * 22 20 18 26 26 C 1.40724 * 119.50965 * 0.27934 * 17 16 15 27 27 C 1.37614 * 119.74470 * 359.44755 * 26 17 16 28 28 C 1.46928 * 118.73707 * 306.09475 * 10 9 8 29 29 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47224 * 300.00083 * 1 2 3 31 31 H 1.09000 * 109.46789 * 59.99986 * 1 2 3 32 32 H 0.96696 * 113.99825 * 60.00557 * 4 2 1 33 33 H 1.08998 * 109.46214 * 301.35669 * 7 5 2 34 34 H 1.09003 * 109.45808 * 61.31897 * 7 5 2 35 35 H 1.08993 * 109.50297 * 58.58742 * 8 7 5 36 36 H 1.09009 * 109.49868 * 178.65655 * 8 7 5 37 37 H 1.08999 * 109.73944 * 295.12435 * 9 8 7 38 38 H 1.09003 * 109.66460 * 174.54800 * 9 8 7 39 39 H 1.08007 * 119.87491 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.12496 * 179.97438 * 16 15 14 41 41 H 0.97006 * 120.00491 * 354.30540 * 21 20 18 42 42 H 1.08000 * 120.12665 * 179.71961 * 26 17 16 43 43 H 1.08001 * 119.87778 * 180.28042 * 27 26 17 44 44 H 1.08994 * 109.58686 * 173.64597 * 28 10 9 45 45 H 1.09008 * 109.58389 * 294.07530 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 1 1.6760 -1.7487 -1.2503 7 6 1.5335 0.0014 -2.4996 8 6 2.0159 -0.7389 -3.7492 9 6 3.5519 -0.7357 -3.7782 10 7 4.0443 -1.3012 -2.5146 11 16 5.1164 -2.5633 -2.5161 12 8 5.8033 -2.5076 -1.2734 13 8 5.7788 -2.5256 -3.7726 14 6 4.1715 -4.0503 -2.4961 15 6 3.7909 -4.6396 -3.6919 16 6 3.0532 -5.8013 -3.6883 17 6 2.6849 -6.3907 -2.4648 18 6 1.9275 -7.5846 -2.4488 19 1 1.2947 -7.8340 -3.2878 20 6 1.9978 -8.4431 -1.3459 21 7 3.0654 -8.4508 -0.5899 22 14 0.5671 -9.5782 -0.9532 23 1 0.8885 -10.3799 0.2547 24 1 -0.6521 -8.7687 -0.7006 25 1 0.3278 -10.4885 -2.1018 26 6 3.0713 -5.7803 -1.2572 27 6 3.8136 -4.6218 -1.2848 28 6 3.5719 -0.7216 -1.2498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7210 -1.5952 1.2328 33 1 0.4439 0.0246 -2.4893 34 1 1.9183 1.0212 -2.5105 35 1 1.6522 -1.7661 -3.7267 36 1 1.6350 -0.2374 -4.6389 37 1 3.9160 0.2859 -3.8877 38 1 3.9043 -1.3429 -4.6121 39 1 4.0744 -4.1851 -4.6298 40 1 2.7574 -6.2585 -4.6211 41 1 3.8404 -7.9234 -0.8396 42 1 2.7902 -6.2216 -0.3125 43 1 4.1152 -4.1539 -0.3593 44 1 3.9375 -1.3194 -0.4149 45 1 3.9376 0.3012 -1.1574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305218124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = -134.309553 kcal Electronic energy + Delta-G solvation = -28655.535877 eV Core-core repulsion = 24763.262112 eV Total energy + Delta-G solvation = -3892.273765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.28501 -37.84417 -36.79716 -36.57304 -35.19499 -34.27282 -32.94199 -31.39522 -30.15795 -29.53375 -29.31505 -25.67570 -24.71619 -23.66676 -21.77743 -21.50622 -21.36642 -20.28122 -18.45698 -18.24591 -17.40543 -16.63040 -16.42236 -15.85496 -15.36644 -14.82254 -14.68582 -14.54547 -14.34988 -14.15384 -13.79452 -13.67055 -13.39602 -13.16605 -12.91767 -12.55144 -12.43344 -12.29507 -12.11418 -11.88048 -11.84335 -11.54962 -11.48058 -11.39090 -11.37271 -11.28536 -11.06106 -10.88194 -10.72493 -10.61434 -10.42234 -10.27667 -9.96409 -9.91880 -9.61074 -9.36390 -8.70648 -8.15400 -7.98394 -7.57166 -4.93038 1.13379 2.16932 2.70555 2.95660 3.00203 3.16976 3.52940 3.74459 4.16439 4.25019 4.46577 4.50882 4.73608 4.77510 4.93761 5.04501 5.06749 5.15345 5.17182 5.32025 5.38859 5.42682 5.53255 5.64536 5.74844 5.79733 5.82420 5.85122 5.91652 5.93436 5.94592 6.10166 6.15242 6.36326 6.37471 6.48537 6.58576 6.83195 6.87702 7.05756 7.24429 7.39763 7.42236 7.46264 7.59324 7.80983 7.99402 8.37724 8.49033 9.63377 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004248 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.911400 B = 6590.446276 C = 7769.753698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.097 0.903 4 O -0.563 6.563 5 C -0.137 4.137 6 H 0.084 0.916 7 C -0.108 4.108 8 C -0.135 4.135 9 C 0.124 3.876 10 N -1.004 6.004 11 S 2.692 3.308 12 O -0.980 6.980 13 O -0.983 6.983 14 C -0.797 4.797 15 C 0.008 3.992 16 C -0.238 4.238 17 C 0.118 3.882 18 C -0.485 4.485 19 H 0.085 0.915 20 C 0.034 3.966 21 N -0.766 5.766 22 Si 1.068 2.932 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.235 4.235 27 C 0.007 3.993 28 C 0.136 3.864 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.378 0.622 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.306 0.694 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 12.766 -1.260 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.049 3.951 3 H 0.115 0.885 4 O -0.369 6.369 5 C -0.157 4.157 6 H 0.102 0.898 7 C -0.146 4.146 8 C -0.174 4.174 9 C -0.002 4.002 10 N -0.839 5.839 11 S 2.792 3.208 12 O -0.971 6.971 13 O -0.974 6.974 14 C -0.892 4.892 15 C -0.012 4.012 16 C -0.259 4.259 17 C 0.114 3.886 18 C -0.511 4.511 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.386 5.386 22 Si 0.890 3.110 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.256 4.256 27 C -0.014 4.014 28 C 0.010 3.990 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.884 12.371 -0.032 13.699 hybrid contribution -0.402 0.148 -1.355 1.421 sum -6.286 12.519 -1.388 14.077 Atomic orbital electron populations 1.22549 0.96504 1.02819 1.02513 1.21886 0.92786 0.96455 0.83988 0.88529 1.86564 1.77292 1.29461 1.43596 1.22304 0.96716 1.01362 0.95368 0.89796 1.21499 1.00382 0.98891 0.93834 1.21990 0.95807 1.01853 0.97787 1.21409 0.94000 0.99305 0.85451 1.57986 1.64471 1.50345 1.11129 1.01345 0.73669 0.73153 0.72649 1.93486 1.71377 1.87260 1.44951 1.93469 1.72457 1.87398 1.44093 1.29221 1.35517 1.24986 0.99523 1.20159 0.92540 0.93968 0.94530 1.20960 1.07880 1.00130 0.96899 1.17863 0.87493 0.91702 0.91549 1.20971 1.21626 1.03644 1.04852 0.89686 1.27318 1.01516 0.98617 0.91714 1.70453 1.03047 1.30048 1.35090 0.83581 0.73855 0.75722 0.77842 1.19387 1.19608 1.19701 1.21176 1.07894 0.98784 0.97711 1.20180 0.92436 0.94351 0.94399 1.21247 0.92986 0.99428 0.85302 0.92105 0.92011 0.91341 0.77415 0.91531 0.91906 0.90882 0.91104 0.91687 0.89363 0.87872 0.88223 0.88001 0.87240 0.87767 0.88785 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 9.19 37.16 0.34 -1.26 16 2 C 0.11 1.09 3.17 -26.73 -0.08 1.01 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 4 O -0.56 -6.64 12.78 -35.23 -0.45 -7.09 16 5 C -0.14 -1.55 2.11 -90.50 -0.19 -1.74 16 6 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.11 -1.05 4.86 -26.69 -0.13 -1.18 16 8 C -0.14 -1.48 6.10 -26.38 -0.16 -1.64 16 9 C 0.12 1.58 6.41 -3.48 -0.02 1.56 16 10 N -1.00 -15.27 3.28 -113.26 -0.37 -15.64 16 11 S 2.69 52.27 5.69 -107.50 -0.61 51.66 16 12 O -0.98 -21.19 15.98 -57.17 -0.91 -22.11 16 13 O -0.98 -20.82 15.96 -57.17 -0.91 -21.73 16 14 C -0.80 -17.11 6.00 -39.29 -0.24 -17.34 16 15 C 0.01 0.18 9.49 -39.66 -0.38 -0.20 16 16 C -0.24 -5.52 9.80 -38.87 -0.38 -5.90 16 17 C 0.12 2.90 5.30 -106.82 -0.57 2.33 16 18 C -0.48 -11.70 8.98 -37.74 -0.34 -12.04 16 19 H 0.09 1.96 7.96 -52.48 -0.42 1.54 16 20 C 0.03 0.78 4.93 -17.35 -0.09 0.70 16 21 N -0.77 -18.80 12.32 55.55 0.68 -18.12 16 22 Si 1.07 19.34 30.00 -169.99 -5.10 14.24 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 25 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 26 C -0.24 -5.64 7.96 -38.87 -0.31 -5.95 16 27 C 0.01 0.15 9.49 -39.66 -0.38 -0.23 16 28 C 0.14 1.84 5.43 -3.71 -0.02 1.82 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.52 6.41 -51.93 -0.33 0.18 16 32 H 0.38 3.64 9.04 45.56 0.41 4.05 16 33 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.18 7.12 -51.93 -0.37 0.81 16 39 H 0.10 2.04 7.60 -52.48 -0.40 1.64 16 40 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.31 7.80 6.70 -40.82 -0.27 7.53 16 42 H 0.11 2.65 6.50 -52.49 -0.34 2.31 16 43 H 0.10 2.16 7.60 -52.49 -0.40 1.76 16 44 H 0.09 1.42 6.85 -51.93 -0.36 1.06 16 45 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -29.76 370.02 -10.87 -40.63 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.83 Total: 12.64 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: -2.94 Total: -40.06 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.31 Total: -33.76 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.28 Total: -50.92 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.10 Total: 14.24 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.61 Total: 51.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.76 -10.87 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305218124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.684 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds