Wall clock time and date at job start Tue Mar 31 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47068 * 2 1 4 4 O 1.42902 * 109.46922 * 120.00015 * 2 1 3 5 5 C 1.53002 * 109.47417 * 240.00171 * 2 1 3 6 6 H 1.09005 * 109.49329 * 300.06575 * 5 2 1 7 7 C 1.53037 * 109.52348 * 60.14281 * 5 2 1 8 8 C 1.53040 * 109.53636 * 181.33527 * 7 5 2 9 9 C 1.53630 * 109.24254 * 298.51016 * 8 7 5 10 10 N 1.46933 * 108.54090 * 54.85921 * 9 8 7 11 11 S 1.65600 * 120.62938 * 126.36605 * 10 9 8 12 12 O 1.42101 * 106.39929 * 156.17795 * 11 10 9 13 13 O 1.42095 * 106.40199 * 23.26177 * 11 10 9 14 14 C 1.76191 * 107.21776 * 269.71815 * 11 10 9 15 15 C 1.38637 * 119.74909 * 90.00685 * 14 11 10 16 16 C 1.37619 * 120.25051 * 179.97438 * 15 14 11 17 17 C 1.40711 * 119.74558 * 0.02562 * 16 15 14 18 18 C 1.41396 * 120.24611 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99767 * 334.85377 * 18 17 16 20 20 C 1.39946 * 119.99971 * 154.85712 * 18 17 16 21 21 N 1.30815 * 119.99906 * 334.27512 * 20 18 17 22 22 Si 1.86803 * 119.99876 * 154.27924 * 20 18 17 23 23 H 1.48497 * 109.46802 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46860 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.46934 * 59.99619 * 22 20 18 26 26 C 1.40724 * 119.50965 * 0.27934 * 17 16 15 27 27 C 1.37614 * 119.74470 * 359.44755 * 26 17 16 28 28 C 1.46928 * 118.73707 * 306.09475 * 10 9 8 29 29 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47224 * 300.00083 * 1 2 3 31 31 H 1.09000 * 109.46789 * 59.99986 * 1 2 3 32 32 H 0.96696 * 113.99825 * 60.00557 * 4 2 1 33 33 H 1.08998 * 109.46214 * 301.35669 * 7 5 2 34 34 H 1.09003 * 109.45808 * 61.31897 * 7 5 2 35 35 H 1.08993 * 109.50297 * 58.58742 * 8 7 5 36 36 H 1.09009 * 109.49868 * 178.65655 * 8 7 5 37 37 H 1.08999 * 109.73944 * 295.12435 * 9 8 7 38 38 H 1.09003 * 109.66460 * 174.54800 * 9 8 7 39 39 H 1.08007 * 119.87491 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.12496 * 179.97438 * 16 15 14 41 41 H 0.97006 * 120.00491 * 354.30540 * 21 20 18 42 42 H 1.08000 * 120.12665 * 179.71961 * 26 17 16 43 43 H 1.08001 * 119.87778 * 180.28042 * 27 26 17 44 44 H 1.08994 * 109.58686 * 173.64597 * 28 10 9 45 45 H 1.09008 * 109.58389 * 294.07530 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 1 1.6760 -1.7487 -1.2503 7 6 1.5335 0.0014 -2.4996 8 6 2.0159 -0.7389 -3.7492 9 6 3.5519 -0.7357 -3.7782 10 7 4.0443 -1.3012 -2.5146 11 16 5.1164 -2.5633 -2.5161 12 8 5.8033 -2.5076 -1.2734 13 8 5.7788 -2.5256 -3.7726 14 6 4.1715 -4.0503 -2.4961 15 6 3.7909 -4.6396 -3.6919 16 6 3.0532 -5.8013 -3.6883 17 6 2.6849 -6.3907 -2.4648 18 6 1.9275 -7.5846 -2.4488 19 1 1.2947 -7.8340 -3.2878 20 6 1.9978 -8.4431 -1.3459 21 7 3.0654 -8.4508 -0.5899 22 14 0.5671 -9.5782 -0.9532 23 1 0.8885 -10.3799 0.2547 24 1 -0.6521 -8.7687 -0.7006 25 1 0.3278 -10.4885 -2.1018 26 6 3.0713 -5.7803 -1.2572 27 6 3.8136 -4.6218 -1.2848 28 6 3.5719 -0.7216 -1.2498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7210 -1.5952 1.2328 33 1 0.4439 0.0246 -2.4893 34 1 1.9183 1.0212 -2.5105 35 1 1.6522 -1.7661 -3.7267 36 1 1.6350 -0.2374 -4.6389 37 1 3.9160 0.2859 -3.8877 38 1 3.9043 -1.3429 -4.6121 39 1 4.0744 -4.1851 -4.6298 40 1 2.7574 -6.2585 -4.6211 41 1 3.8404 -7.9234 -0.8396 42 1 2.7902 -6.2216 -0.3125 43 1 4.1152 -4.1539 -0.3593 44 1 3.9375 -1.3194 -0.4149 45 1 3.9376 0.3012 -1.1574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305218124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:44 Heat of formation + Delta-G solvation = -154.128859 kcal Electronic energy + Delta-G solvation = -28656.395307 eV Core-core repulsion = 24763.262112 eV Total energy + Delta-G solvation = -3893.133195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22046 -39.65557 -38.30562 -37.67816 -36.87263 -36.05539 -33.92841 -32.35424 -31.97340 -31.34451 -30.16050 -27.48603 -25.68199 -24.63855 -23.36115 -23.19336 -22.58423 -21.24732 -20.07214 -19.82999 -18.85798 -18.23612 -17.37624 -17.09665 -16.62416 -16.41826 -16.08974 -15.64887 -15.51257 -15.35567 -15.17869 -15.13435 -14.60724 -14.37894 -14.29758 -14.09687 -13.88605 -13.61526 -13.32016 -13.26135 -13.22880 -13.09215 -12.98146 -12.84617 -12.67833 -12.44431 -12.09115 -11.99384 -11.93899 -11.82216 -11.76602 -11.56825 -11.42457 -11.21624 -11.07857 -10.77216 -10.02918 -9.86486 -9.80055 -9.40468 -6.79856 -0.42531 0.37778 0.85179 1.47961 1.53538 1.77612 2.09336 2.23837 2.46296 2.86201 3.30688 3.35717 3.49551 3.63646 3.82141 3.94823 4.09668 4.13570 4.15610 4.16717 4.37792 4.42412 4.44617 4.55457 4.62799 4.64967 4.79861 4.83998 4.87430 4.93572 4.98321 5.00840 5.03098 5.13483 5.21168 5.26435 5.33943 5.39729 5.40522 5.51068 5.53265 5.53732 5.62553 5.73260 5.98019 6.16098 6.54459 6.66746 6.79830 7.77191 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004248 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.911400 B = 6590.446276 C = 7769.753698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H 0.109 0.891 4 O -0.583 6.583 5 C -0.131 4.131 6 H 0.061 0.939 7 C -0.105 4.105 8 C -0.133 4.133 9 C 0.113 3.887 10 N -0.996 5.996 11 S 2.715 3.285 12 O -1.003 7.003 13 O -0.999 6.999 14 C -0.801 4.801 15 C 0.006 3.994 16 C -0.254 4.254 17 C 0.095 3.905 18 C -0.514 4.514 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.789 5.789 22 Si 1.119 2.881 23 H -0.271 1.271 24 H -0.258 1.258 25 H -0.253 1.253 26 C -0.251 4.251 27 C 0.003 3.997 28 C 0.128 3.872 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.384 0.616 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.288 0.712 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 14.887 -2.027 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.050 3.950 3 H 0.127 0.873 4 O -0.390 6.390 5 C -0.152 4.152 6 H 0.080 0.920 7 C -0.143 4.143 8 C -0.172 4.172 9 C -0.012 4.012 10 N -0.834 5.834 11 S 2.812 3.188 12 O -0.994 6.994 13 O -0.989 6.989 14 C -0.894 4.894 15 C -0.013 4.013 16 C -0.275 4.275 17 C 0.092 3.908 18 C -0.540 4.540 19 H 0.108 0.892 20 C -0.216 4.216 21 N -0.410 5.410 22 Si 0.934 3.066 23 H -0.195 1.195 24 H -0.183 1.183 25 H -0.177 1.177 26 C -0.271 4.271 27 C -0.016 4.016 28 C 0.003 3.997 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.361 14.468 -0.820 16.254 hybrid contribution 0.145 -0.299 -1.171 1.217 sum -7.216 14.170 -1.991 16.025 Atomic orbital electron populations 1.22497 0.95193 1.02650 1.03492 1.21986 0.93769 0.96520 0.82681 0.87309 1.86535 1.77818 1.30103 1.44504 1.22244 0.94918 1.00740 0.97249 0.92041 1.21529 1.01427 0.99388 0.91921 1.21989 0.94274 1.01123 0.99769 1.21764 0.95436 1.00358 0.83624 1.57648 1.64121 1.48614 1.13032 1.00621 0.73521 0.72943 0.71688 1.93453 1.72355 1.87559 1.46001 1.93442 1.73169 1.87638 1.44674 1.29726 1.34125 1.26463 0.99042 1.20434 0.91811 0.93508 0.95575 1.21188 1.08497 1.00823 0.96946 1.18185 0.87975 0.92448 0.92222 1.21192 1.22600 1.04201 1.05982 0.89225 1.28734 1.02792 0.99181 0.90884 1.70571 1.03344 1.31036 1.36015 0.82985 0.71115 0.74298 0.78160 1.19511 1.18259 1.17684 1.21169 1.09123 0.99522 0.97310 1.20353 0.91987 0.93886 0.95424 1.21464 0.94684 0.99851 0.83659 0.92863 0.91650 0.89720 0.76781 0.89914 0.89755 0.93222 0.88298 0.88834 0.90209 0.85736 0.87165 0.89889 0.88366 0.86728 0.90844 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 9.19 71.98 0.66 -2.03 16 2 C 0.11 1.98 3.17 30.59 0.10 2.08 16 3 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 4 O -0.58 -13.28 12.78 -148.98 -1.90 -15.18 16 5 C -0.13 -2.73 2.11 -10.72 -0.02 -2.75 16 6 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 7 C -0.11 -1.67 4.86 30.62 0.15 -1.53 16 8 C -0.13 -2.51 6.10 30.82 0.19 -2.32 16 9 C 0.11 2.57 6.41 86.51 0.55 3.12 16 10 N -1.00 -28.75 3.28 -512.25 -1.68 -30.43 16 11 S 2.72 104.10 5.69 -56.49 -0.32 103.78 16 12 O -1.00 -43.32 15.98 -128.00 -2.04 -45.36 16 13 O -1.00 -41.32 15.96 -128.00 -2.04 -43.36 16 14 C -0.80 -34.70 6.00 22.46 0.13 -34.56 16 15 C 0.01 0.28 9.49 22.22 0.21 0.49 16 16 C -0.25 -11.98 9.80 22.73 0.22 -11.76 16 17 C 0.10 4.85 5.30 -21.29 -0.11 4.74 16 18 C -0.51 -25.47 8.98 23.46 0.21 -25.25 16 19 H 0.09 4.21 7.96 -2.91 -0.02 4.19 16 20 C 0.00 0.18 4.93 85.26 0.42 0.60 16 21 N -0.79 -40.17 12.32 21.83 0.27 -39.91 16 22 Si 1.12 38.76 30.00 68.60 2.06 40.82 16 23 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 24 H -0.26 -8.36 7.11 99.48 0.71 -7.66 16 25 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 26 C -0.25 -12.54 7.96 22.73 0.18 -12.35 16 27 C 0.00 0.16 9.49 22.22 0.21 0.37 16 28 C 0.13 3.28 5.43 86.36 0.47 3.74 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.98 6.41 -2.39 -0.02 0.97 16 32 H 0.38 7.46 9.04 -74.06 -0.67 6.79 16 33 H 0.08 1.10 6.37 -2.39 -0.02 1.08 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.97 7.12 -2.39 -0.02 1.96 16 39 H 0.12 4.82 7.60 -2.91 -0.02 4.80 16 40 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 41 H 0.29 15.52 6.70 -92.70 -0.62 14.89 16 42 H 0.10 5.04 6.50 -2.91 -0.02 5.02 16 43 H 0.11 4.91 7.60 -2.91 -0.02 4.88 16 44 H 0.07 2.19 6.85 -2.39 -0.02 2.18 16 45 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -65.41 370.02 -1.61 -67.02 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.48 Total: 40.03 kcal Atomic # 6 Polarization: -80.98 SS G_CDS: 3.57 Total: -77.41 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.41 Total: -70.34 kcal Atomic # 8 Polarization: -97.91 SS G_CDS: -5.99 Total: -103.90 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.06 Total: 40.82 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.32 Total: 103.78 kcal Total: -65.41 -1.61 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305218124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.110 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds