Wall clock time and date at job start Tue Mar 31 2020 23:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99848 * 2 1 4 4 C 1.38732 * 120.05402 * 179.97438 * 3 2 1 5 5 C 1.38151 * 119.94082 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05313 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.93903 * 179.97438 * 6 5 4 8 8 C 1.53046 * 109.45893 * 119.97395 * 7 6 5 9 9 C 1.53159 * 109.32667 * 181.38373 * 8 7 6 10 10 N 1.46928 * 108.76987 * 305.35456 * 9 8 7 11 11 S 1.65595 * 120.63205 * 233.63241 * 10 9 8 12 12 O 1.42098 * 104.27860 * 26.04539 * 11 10 9 13 13 O 1.42096 * 104.27978 * 153.90766 * 11 10 9 14 14 C 1.81400 * 104.44862 * 269.97699 * 11 10 9 15 15 C 1.50708 * 109.47054 * 180.02562 * 14 11 10 16 16 H 1.07997 * 119.99909 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99950 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00007 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00024 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47433 * 89.99886 * 19 17 15 21 21 H 1.48506 * 109.46973 * 210.00077 * 19 17 15 22 22 H 1.48508 * 109.47193 * 329.99485 * 19 17 15 23 23 C 1.46931 * 118.73792 * 53.61250 * 10 9 8 24 24 C 1.53039 * 109.45760 * 240.02760 * 7 6 5 25 25 C 1.38259 * 120.11249 * 0.25057 * 6 5 4 26 26 C 1.38146 * 120.06027 * 359.45388 * 25 6 5 27 27 H 1.09005 * 109.46573 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47615 * 300.00274 * 1 2 3 29 29 H 1.09001 * 109.47105 * 60.01002 * 1 2 3 30 30 H 1.07995 * 120.03066 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.97242 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46114 * 359.97438 * 7 6 5 33 33 H 1.08996 * 109.49379 * 301.31994 * 8 7 6 34 34 H 1.08994 * 109.49581 * 61.41763 * 8 7 6 35 35 H 1.08999 * 109.58991 * 185.56748 * 9 8 7 36 36 H 1.09002 * 109.70860 * 65.20753 * 9 8 7 37 37 H 1.08999 * 109.47250 * 299.99678 * 14 11 10 38 38 H 1.08995 * 109.47692 * 60.00065 * 14 11 10 39 39 H 0.97001 * 119.99807 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58425 * 186.61021 * 23 10 9 41 41 H 1.08995 * 109.70793 * 66.24640 * 23 10 9 42 42 H 1.08997 * 109.49901 * 298.57553 * 24 7 6 43 43 H 1.08992 * 109.50107 * 58.68132 * 24 7 6 44 44 H 1.08012 * 119.97014 * 179.70253 * 25 6 5 45 45 H 1.07998 * 120.03349 * 180.24923 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 3.5754 5.8011 -1.2469 9 6 4.2989 7.1509 -1.2602 10 7 4.0246 7.8469 0.0044 11 16 3.4181 9.3878 0.0051 12 8 2.7272 9.4930 -1.2322 13 8 2.7260 9.4915 1.2417 14 6 4.8868 10.4523 0.0065 15 6 4.4597 11.8976 0.0079 16 1 3.4098 12.1504 0.0074 17 6 5.4094 12.8971 0.0086 18 7 5.0367 14.1583 0.0092 19 14 7.2255 12.4599 0.0071 20 1 7.7061 12.3457 -1.3933 21 1 7.9909 13.5221 0.7081 22 1 7.4234 11.1644 0.7057 23 6 4.2982 7.1495 1.2684 24 6 3.5745 5.7993 1.2532 25 6 1.9209 3.6048 0.0068 26 6 1.2913 2.3751 0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0208 0.3801 0.0005 31 1 5.1344 2.5753 0.0011 32 1 5.0664 4.8757 0.0035 33 1 3.8477 5.2339 -2.1369 34 1 2.4980 5.9658 -1.2353 35 1 3.9363 7.7518 -2.0941 36 1 5.3722 6.9916 -1.3642 37 1 5.4821 10.2490 0.8967 38 1 5.4831 10.2502 -0.8832 39 1 5.7049 14.8615 0.0101 40 1 3.9348 7.7494 2.1027 41 1 5.3709 6.9879 1.3743 42 1 2.4972 5.9642 1.2411 43 1 3.8462 5.2310 2.1426 44 1 1.3340 4.5115 0.0121 45 1 0.2128 2.3201 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331348804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:23 Heat of formation + Delta-G solvation = -117.529797 kcal Electronic energy + Delta-G solvation = -27258.099136 eV Core-core repulsion = 23366.552996 eV Total energy + Delta-G solvation = -3891.546140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.20329 -39.79469 -38.06224 -38.01564 -36.82870 -35.31388 -34.12445 -31.97549 -31.95327 -31.74262 -30.20686 -28.08485 -25.44961 -24.89590 -24.23445 -23.74619 -22.31777 -21.01017 -19.56964 -19.51184 -19.08950 -18.28356 -17.41054 -17.12667 -17.04602 -16.62583 -16.35083 -16.07633 -15.59668 -15.39089 -15.23819 -14.89666 -14.79537 -14.68196 -14.47643 -14.23864 -13.98752 -13.70398 -13.69618 -13.52425 -13.28386 -13.04155 -12.80322 -12.78820 -12.68637 -12.61452 -12.19986 -12.09792 -12.04035 -11.95852 -11.85104 -11.67173 -11.37079 -11.36444 -11.09069 -10.92830 -9.91012 -9.81604 -8.99216 -8.44007 -6.60844 -0.50190 0.43416 0.48293 1.34524 1.37805 1.49333 1.97605 2.28863 2.41170 2.81836 2.87760 3.04364 3.38478 3.66788 3.75598 3.92908 4.01188 4.09048 4.16929 4.28228 4.34315 4.37009 4.43704 4.48554 4.50492 4.50980 4.58225 4.63681 4.70830 4.73588 4.86698 4.89566 4.91763 4.93281 5.08802 5.14381 5.23201 5.23569 5.33066 5.39174 5.44420 5.47277 5.81352 5.81971 5.82027 5.87680 6.43854 6.46914 7.07808 8.71359 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.002400 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.268908 B =11663.984671 C =12072.314161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.105 3.895 4 C -0.161 4.161 5 C -0.073 4.073 6 C -0.113 4.113 7 C -0.035 4.035 8 C -0.119 4.119 9 C 0.109 3.891 10 N -1.000 6.000 11 S 2.622 3.378 12 O -1.002 7.002 13 O -1.002 7.002 14 C -0.482 4.482 15 C -0.557 4.557 16 H 0.035 0.965 17 C 0.020 3.980 18 N -0.935 5.935 19 Si 0.956 3.044 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.229 1.229 23 C 0.109 3.891 24 C -0.120 4.120 25 C -0.086 4.086 26 C -0.213 4.213 27 H 0.119 0.881 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.276 0.724 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -30.250 0.008 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.060 3.940 4 C -0.180 4.180 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.053 4.053 8 C -0.158 4.158 9 C -0.015 4.015 10 N -0.840 5.840 11 S 2.721 3.279 12 O -0.992 6.992 13 O -0.992 6.992 14 C -0.615 4.615 15 C -0.595 4.595 16 H 0.053 0.947 17 C -0.181 4.181 18 N -0.572 5.572 19 Si 0.776 3.224 20 H -0.181 1.181 21 H -0.204 1.204 22 H -0.151 1.151 23 C -0.015 4.015 24 C -0.159 4.159 25 C -0.105 4.105 26 C -0.231 4.231 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.171 0.829 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.210 -30.049 0.010 30.049 hybrid contribution 0.255 0.993 -0.020 1.025 sum 0.465 -29.056 -0.010 29.060 Atomic orbital electron populations 1.23283 0.76843 1.05402 1.01925 1.86029 1.23119 1.27070 1.88894 1.19273 0.92993 0.84330 0.97381 1.20676 0.91337 0.99461 1.06499 1.21142 1.00943 0.90178 0.96859 1.19862 0.93312 0.95283 1.02868 1.20055 1.00929 0.90121 0.94231 1.21918 1.00092 0.94916 0.98913 1.21690 1.01936 0.93787 0.84110 1.57644 1.83126 1.30170 1.13055 1.04326 0.77263 0.73855 0.72416 1.93429 1.72508 1.86471 1.46829 1.93428 1.72442 1.86478 1.46880 1.28316 1.17305 1.08195 1.07689 1.20377 0.94126 0.89126 1.55888 0.94698 1.26106 1.05737 0.94068 0.92156 1.70033 1.37092 1.00816 1.49244 0.85580 0.76593 0.80120 0.80119 1.18123 1.20419 1.15142 1.21686 1.01925 0.93765 0.84132 1.21929 1.00096 0.94923 0.98911 1.20962 0.94860 0.97034 0.97598 1.21380 1.00726 0.92210 1.08832 0.86307 0.92151 0.92145 0.84262 0.82895 0.87731 0.88927 0.93128 0.90183 0.88227 0.87495 0.87660 0.91506 0.90209 0.88265 0.93124 0.88936 0.86256 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.02 10.50 -92.51 -0.97 -6.99 16 3 C 0.11 1.98 6.69 22.51 0.15 2.13 16 4 C -0.16 -2.69 9.99 22.37 0.22 -2.47 16 5 C -0.07 -1.09 9.66 22.26 0.22 -0.87 16 6 C -0.11 -1.93 4.78 -19.85 -0.09 -2.03 16 7 C -0.04 -0.57 2.32 -11.51 -0.03 -0.60 16 8 C -0.12 -2.31 5.15 30.66 0.16 -2.15 16 9 C 0.11 2.48 6.43 86.35 0.56 3.03 16 10 N -1.00 -28.38 3.22 -513.10 -1.65 -30.03 16 11 S 2.62 107.60 5.37 -56.49 -0.30 107.29 16 12 O -1.00 -46.83 16.59 -127.65 -2.12 -48.94 16 13 O -1.00 -46.85 16.59 -127.65 -2.12 -48.97 16 14 C -0.48 -20.93 5.00 71.24 0.36 -20.57 16 15 C -0.56 -31.97 9.68 25.60 0.25 -31.72 16 16 H 0.03 2.26 7.96 -2.91 -0.02 2.24 16 17 C 0.02 1.16 5.47 84.65 0.46 1.63 16 18 N -0.93 -57.43 13.96 21.45 0.30 -57.13 16 19 Si 0.96 40.67 27.47 68.60 1.88 42.55 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 23 C 0.11 2.49 6.43 86.36 0.56 3.04 16 24 C -0.12 -2.31 5.15 30.67 0.16 -2.16 16 25 C -0.09 -1.66 8.73 22.25 0.19 -1.46 16 26 C -0.21 -3.88 9.04 22.37 0.20 -3.68 16 27 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 29 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 30 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.15 1.45 7.94 -2.91 -0.02 1.42 16 32 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 35 H 0.08 2.09 6.86 -2.39 -0.02 2.07 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 4.13 7.20 -2.39 -0.02 4.11 16 38 H 0.11 4.01 7.57 -2.39 -0.02 3.99 16 39 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.08 2.09 6.86 -2.39 -0.02 2.07 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.17 7.42 -2.39 -0.02 1.15 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.12 2.36 7.13 -2.90 -0.02 2.34 16 45 H 0.14 2.03 6.30 -2.91 -0.02 2.01 16 Total: -1.00 -79.26 371.75 0.42 -78.84 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.93 Total: 19.94 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 4.47 Total: -56.56 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -1.35 Total: -87.16 kcal Atomic # 8 Polarization: -99.70 SS G_CDS: -5.21 Total: -104.90 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.55 kcal Atomic # 16 Polarization: 107.60 SS G_CDS: -0.30 Total: 107.29 kcal Total: -79.26 0.42 -78.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331348804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.692 kcal (2) G-P(sol) polarization free energy of solvation -79.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds