Wall clock time and date at job start Tue Mar 31 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47408 * 2 1 4 4 C 1.46496 * 120.00109 * 74.95759 * 3 2 1 5 5 C 1.53003 * 109.46936 * 90.00597 * 4 3 2 6 6 O 1.42898 * 109.47493 * 64.99773 * 5 4 3 7 7 C 1.42893 * 114.00136 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47078 * 180.02562 * 7 6 5 9 9 O 1.42895 * 109.47007 * 65.00023 * 8 7 6 10 10 C 1.34776 * 119.99826 * 254.96513 * 3 2 1 11 11 O 1.21548 * 119.99839 * 183.49910 * 10 3 2 12 12 C 1.47871 * 119.99975 * 3.49217 * 10 3 2 13 13 C 1.39672 * 120.09810 * 22.98855 * 12 10 3 14 14 C 1.38043 * 120.03450 * 179.74286 * 13 12 10 15 15 C 1.38184 * 120.24242 * 0.55771 * 14 13 12 16 16 C 1.39177 * 120.20116 * 359.69806 * 15 14 13 17 17 S 1.76199 * 120.01722 * 179.97438 * 16 15 14 18 18 C 1.76209 * 100.00106 * 265.10030 * 17 16 15 19 19 H 1.08001 * 119.99459 * 5.02098 * 18 17 16 20 20 C 1.38722 * 120.00020 * 185.02248 * 18 17 16 21 21 N 1.31626 * 120.00385 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00029 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47182 * 89.99260 * 22 20 18 24 24 H 1.48500 * 109.47067 * 209.99528 * 22 20 18 25 25 H 1.48501 * 109.46678 * 329.99397 * 22 20 18 26 26 C 1.38874 * 119.96309 * 0.02562 * 16 15 14 27 27 H 1.08999 * 109.46874 * 300.00285 * 1 2 3 28 28 H 1.08995 * 109.46720 * 60.00058 * 1 2 3 29 29 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47289 * 239.99541 * 2 1 3 31 31 H 1.09000 * 109.47385 * 119.99770 * 2 1 3 32 32 H 1.08996 * 109.47246 * 330.00185 * 4 3 2 33 33 H 1.09002 * 109.47220 * 209.99847 * 4 3 2 34 34 H 1.08998 * 109.46836 * 185.00485 * 5 4 3 35 35 H 1.09003 * 109.46612 * 304.99507 * 5 4 3 36 36 H 1.09000 * 109.47367 * 299.99992 * 7 6 5 37 37 H 1.09000 * 109.47615 * 60.00035 * 7 6 5 38 38 H 1.08998 * 109.47025 * 184.99937 * 8 7 6 39 39 H 1.09001 * 109.46873 * 304.99722 * 8 7 6 40 40 H 0.96702 * 113.99715 * 180.02562 * 9 8 7 41 41 H 1.07999 * 119.98503 * 0.02562 * 13 12 10 42 42 H 1.08002 * 119.87836 * 180.26057 * 14 13 12 43 43 H 1.08004 * 119.89627 * 179.71987 * 15 14 13 44 44 H 0.96992 * 120.00452 * 180.02562 * 21 20 18 45 45 H 1.07990 * 120.12427 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9522 2.1816 1.2252 5 6 3.2426 1.9959 2.0260 6 8 4.3433 2.5278 1.2860 7 6 5.6032 2.4037 1.9485 8 6 6.7028 3.0036 1.0697 9 8 6.4864 4.4090 0.9290 10 6 2.5285 1.9156 -1.1273 11 8 2.9919 3.0392 -1.1115 12 6 2.5246 1.1349 -2.3831 13 6 1.6107 0.0931 -2.5573 14 6 1.6046 -0.6314 -3.7323 15 6 2.5084 -0.3379 -4.7356 16 6 3.4269 0.6946 -4.5704 17 16 4.5776 1.0643 -5.8526 18 6 5.9622 0.1238 -5.3017 19 1 5.8708 -0.5151 -4.4357 20 6 7.1694 0.2040 -5.9803 21 7 7.2806 0.9823 -7.0360 22 14 8.6370 -0.7936 -5.3967 23 1 8.6327 -2.1188 -6.0667 24 1 9.8909 -0.0727 -5.7334 25 1 8.5540 -0.9821 -3.9261 26 6 3.4367 1.4327 -3.3941 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.1021 1.8574 1.8255 33 1 1.8338 3.2337 0.9660 34 1 3.1578 2.5196 2.9782 35 1 3.4070 0.9340 2.2089 36 1 5.5678 2.9357 2.8992 37 1 5.8165 1.3502 2.1295 38 1 7.6737 2.8301 1.5336 39 1 6.6801 2.5322 0.0871 40 1 7.1473 4.8559 0.3825 41 1 0.9054 -0.1428 -1.7742 42 1 0.8941 -1.4337 -3.8661 43 1 2.5017 -0.9113 -5.6508 44 1 8.1246 1.0381 -7.5107 45 1 4.1480 2.2346 -3.2633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337607411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:16 Heat of formation + Delta-G solvation = -98.871355 kcal Electronic energy + Delta-G solvation = -27552.014866 eV Core-core repulsion = 23661.277817 eV Total energy + Delta-G solvation = -3890.737049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62248 -39.45839 -38.86896 -37.58257 -37.05778 -34.66273 -33.36735 -32.12181 -31.41936 -30.82576 -29.34425 -27.75648 -25.20686 -24.54996 -23.75137 -23.45857 -22.95732 -20.66507 -19.79291 -18.68871 -18.47992 -18.01221 -17.77540 -17.34170 -16.94417 -16.68982 -16.37920 -16.21870 -15.58917 -15.46863 -15.19355 -15.16473 -14.96920 -14.65314 -14.26870 -14.16211 -13.81178 -13.55809 -13.35210 -13.14122 -13.02336 -12.97382 -12.87574 -12.67122 -12.54160 -12.39355 -12.26246 -12.00685 -11.90858 -11.56073 -11.23783 -11.08127 -10.85774 -10.73507 -10.53367 -9.99292 -9.65792 -9.59118 -8.81231 -8.39459 -6.20125 -0.11498 0.25218 1.27961 1.36106 1.44929 1.64910 1.81286 2.01922 2.23786 2.74001 2.80716 2.93086 3.31918 3.41565 3.49626 3.88537 3.95148 3.98080 4.14049 4.15478 4.16487 4.18743 4.33322 4.36310 4.39354 4.43829 4.46990 4.50130 4.58934 4.63410 4.71311 4.75681 4.86386 4.92459 4.97250 5.00929 5.24566 5.30171 5.36682 5.43221 5.50724 5.61693 5.88785 6.14864 6.30636 6.40268 6.77138 7.00019 7.22083 8.67718 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008794 B = 0.004158 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.128927 B = 6732.204944 C = 8932.926224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 N -0.599 5.599 4 C 0.117 3.883 5 C 0.037 3.963 6 O -0.399 6.399 7 C 0.058 3.942 8 C 0.073 3.927 9 O -0.589 6.589 10 C 0.556 3.444 11 O -0.563 6.563 12 C -0.154 4.154 13 C -0.101 4.101 14 C -0.122 4.122 15 C -0.066 4.066 16 C -0.127 4.127 17 S -0.098 6.098 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.993 3.007 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.268 1.268 26 C -0.048 4.048 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.026 0.974 40 H 0.392 0.608 41 H 0.200 0.800 42 H 0.178 0.822 43 H 0.136 0.864 44 H 0.274 0.726 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -6.426 21.936 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.060 4.060 3 N -0.331 5.331 4 C -0.005 4.005 5 C -0.040 4.040 6 O -0.318 6.318 7 C -0.019 4.019 8 C -0.005 4.005 9 O -0.396 6.396 10 C 0.345 3.655 11 O -0.442 6.442 12 C -0.159 4.159 13 C -0.118 4.118 14 C -0.141 4.141 15 C -0.087 4.087 16 C -0.239 4.239 17 S 0.137 5.863 18 C -0.682 4.682 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.543 5.543 22 Si 0.814 3.186 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.193 1.193 26 C -0.070 4.070 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.241 0.759 41 H 0.216 0.784 42 H 0.195 0.805 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.991 -5.132 21.041 25.256 hybrid contribution 2.115 -0.539 0.622 2.270 sum -10.876 -5.671 21.664 24.895 Atomic orbital electron populations 1.22301 0.93302 1.04689 1.03146 1.22756 0.96313 0.81206 1.05768 1.47769 1.61410 1.14853 1.09081 1.21684 0.97148 0.96564 0.85122 1.23160 0.87051 0.98668 0.95161 1.88211 1.15778 1.82272 1.45564 1.22661 0.83821 0.99866 0.95537 1.22318 0.97844 0.81554 0.98788 1.86478 1.57120 1.21075 1.74950 1.18464 0.77217 0.85666 0.84127 1.90782 1.46159 1.21385 1.85859 1.20042 1.00706 1.00414 0.94770 1.22912 0.97758 0.92051 0.99093 1.21633 0.99051 1.01306 0.92102 1.22066 0.93024 0.93635 1.00005 1.22474 1.01999 1.00357 0.99031 1.83500 1.08138 1.66246 1.28457 1.23043 0.97580 1.29891 1.17693 0.91531 1.26020 1.01212 0.96626 0.94666 1.70115 1.27462 1.37806 1.18924 0.85041 0.76477 0.78365 0.78689 1.18545 1.19650 1.19261 1.21526 0.96432 0.96813 0.92195 0.90492 0.92386 0.88158 0.87837 0.88476 0.84433 0.91872 0.90639 0.91785 0.91788 0.90456 0.89202 0.95531 0.75859 0.78411 0.80461 0.84653 0.91688 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.05 71.98 0.65 -0.84 16 2 C 0.06 0.88 5.59 86.38 0.48 1.36 16 3 N -0.60 -14.27 2.49 -825.20 -2.06 -16.33 16 4 C 0.12 2.32 5.80 86.38 0.50 2.82 16 5 C 0.04 0.74 6.28 71.98 0.45 1.20 16 6 O -0.40 -12.43 8.95 -130.67 -1.17 -13.60 16 7 C 0.06 1.41 6.32 71.98 0.45 1.87 16 8 C 0.07 1.94 7.43 71.98 0.53 2.48 16 9 O -0.59 -17.84 13.62 -144.34 -1.97 -19.81 16 10 C 0.56 19.91 7.19 86.79 0.62 20.53 16 11 O -0.56 -25.74 15.21 7.27 0.11 -25.63 16 12 C -0.15 -5.59 5.60 -20.10 -0.11 -5.70 16 13 C -0.10 -2.59 7.51 22.57 0.17 -2.43 16 14 C -0.12 -3.13 10.02 22.21 0.22 -2.91 16 15 C -0.07 -2.41 9.79 22.48 0.22 -2.19 16 16 C -0.13 -5.92 5.45 22.65 0.12 -5.79 16 17 S -0.10 -5.54 21.41 -56.49 -1.21 -6.75 16 18 C -0.53 -31.95 9.46 67.94 0.64 -31.31 16 19 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 20 C 0.02 1.15 5.49 84.84 0.47 1.62 16 21 N -0.91 -55.37 13.22 21.63 0.29 -55.08 16 22 Si 0.99 44.69 29.55 68.60 2.03 46.72 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C -0.05 -2.19 9.34 22.70 0.21 -1.98 16 27 H 0.08 0.50 7.42 -2.39 -0.02 0.48 16 28 H 0.06 0.65 7.03 -2.39 -0.02 0.63 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 1.78 4.02 -2.92 -0.01 1.77 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.14 1.35 7.32 -2.39 -0.02 1.33 16 33 H 0.06 1.66 7.47 -2.39 -0.02 1.64 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.39 8.65 9.12 -74.06 -0.68 7.98 16 41 H 0.20 3.30 2.32 -2.91 -0.01 3.30 16 42 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 43 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.09 4.92 7.82 -2.92 -0.02 4.90 16 Total: -1.00 -89.36 385.98 2.00 -87.36 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.34 Total: 24.39 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 5.64 Total: -21.28 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.77 Total: -71.41 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -3.03 Total: -59.04 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.21 Total: -6.75 kcal Total: -89.36 2.00 -87.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337607411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.511 kcal (2) G-P(sol) polarization free energy of solvation -89.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds