Wall clock time and date at job start Tue Mar 31 2020 23:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00148 * 2 1 4 4 C 1.50701 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99840 * 89.99681 * 4 3 2 6 6 C 1.38242 * 119.99556 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00124 * 0.02562 * 6 5 4 8 8 S 1.76196 * 119.99859 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.39984 * 336.45348 * 8 7 6 10 10 O 1.42105 * 106.39961 * 203.54103 * 8 7 6 11 11 N 1.65593 * 107.22113 * 90.00020 * 8 7 6 12 12 C 1.46502 * 119.99605 * 269.99694 * 11 8 7 13 13 C 1.50700 * 109.47099 * 264.99737 * 12 11 8 14 14 H 1.07992 * 120.00396 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99754 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46668 * 90.00094 * 17 15 13 19 19 H 1.48496 * 109.47387 * 210.00050 * 17 15 13 20 20 H 1.48500 * 109.47094 * 330.00171 * 17 15 13 21 21 C 1.46499 * 120.00395 * 89.99978 * 11 8 7 22 22 C 1.53000 * 109.46840 * 265.00156 * 21 11 8 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.38233 * 120.00111 * 0.25270 * 7 6 5 26 26 C 1.38234 * 119.99840 * 269.97648 * 4 3 2 27 27 H 1.09000 * 109.46720 * 300.00001 * 1 2 3 28 28 H 1.08997 * 109.47504 * 59.99918 * 1 2 3 29 29 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47085 * 59.99762 * 3 2 1 31 31 H 1.09007 * 109.46898 * 300.00193 * 3 2 1 32 32 H 1.08003 * 120.00327 * 359.97438 * 5 4 3 33 33 H 1.07997 * 119.99502 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47474 * 25.00485 * 12 11 8 35 35 H 1.09003 * 109.46943 * 145.00256 * 12 11 8 36 36 H 0.96994 * 119.99602 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47391 * 144.99826 * 21 11 8 38 38 H 1.09001 * 109.46813 * 24.99883 * 21 11 8 39 39 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 40 40 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 42 42 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 43 43 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 44 44 H 1.07990 * 120.00334 * 179.72905 * 25 7 6 45 45 H 1.08004 * 120.00152 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2011 1.1320 -1.1981 6 6 5.5792 1.0233 -1.1986 7 6 6.2687 0.9686 -0.0018 8 16 8.0252 0.8294 -0.0025 9 8 8.3816 0.2550 -1.2524 10 8 8.3826 0.2548 1.2471 11 7 8.6388 2.3675 -0.0025 12 6 8.9097 3.0479 -1.2714 13 6 10.3571 2.8563 -1.6450 14 1 11.0097 2.2846 -1.0020 15 6 10.8480 3.4111 -2.8080 16 7 12.1110 3.2435 -3.1343 17 14 9.7194 4.4006 -3.9199 18 1 9.7556 5.8293 -3.5165 19 1 10.1742 4.2720 -5.3276 20 1 8.3312 3.8872 -3.7993 21 6 8.9108 3.0477 1.2661 22 6 7.7110 3.9181 1.6454 23 6 7.9299 5.4308 1.7159 24 6 7.7508 4.6230 3.0028 25 6 5.5797 1.0172 1.1957 26 6 4.2021 1.1321 1.1962 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.6624 1.1743 -2.1332 33 1 6.1171 0.9812 -2.1342 34 1 8.2745 2.6285 -2.0515 35 1 8.6998 4.1122 -1.1649 36 1 12.4563 3.6334 -3.9526 37 1 9.7957 3.6752 1.1596 38 1 9.0829 2.3063 2.0463 39 1 6.7430 3.5655 1.2897 40 1 8.9285 5.8059 1.4916 41 1 7.1058 6.0735 1.4063 42 1 6.8088 4.7343 3.5399 43 1 8.6314 4.4663 3.6258 44 1 6.1180 0.9701 2.1307 45 1 3.6641 1.1745 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340979809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:36 Heat of formation + Delta-G solvation = -58.997111 kcal Electronic energy + Delta-G solvation = -27937.345526 eV Core-core repulsion = 24048.337554 eV Total energy + Delta-G solvation = -3889.007972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.61666 -37.86046 -37.70113 -36.69503 -35.27177 -34.91447 -32.43131 -32.32776 -31.12021 -28.46073 -27.73074 -25.79760 -25.53710 -22.94359 -22.27582 -22.01681 -21.86074 -20.48630 -18.64382 -17.64378 -16.95079 -16.82059 -16.68499 -16.44278 -16.13315 -15.92406 -15.20093 -14.72013 -14.58312 -14.38696 -14.10106 -13.87103 -13.61195 -13.43956 -13.11271 -12.66783 -12.59824 -12.43055 -12.17759 -12.06368 -11.77422 -11.67374 -11.51873 -11.40775 -11.31570 -11.24780 -11.21575 -10.76341 -10.62792 -10.53611 -10.30733 -10.10994 -10.05948 -9.68728 -9.54513 -9.31492 -9.07161 -8.59258 -8.16676 -6.07929 -4.07041 0.60908 0.98163 1.25924 3.09528 3.25807 3.33697 3.33992 3.57445 3.79496 4.00084 4.29240 4.38363 4.47755 4.51954 4.70003 4.81062 4.89094 4.91501 4.95493 5.03741 5.09095 5.10470 5.16801 5.23517 5.26710 5.28459 5.50187 5.53422 5.62767 5.72245 5.76252 5.88119 6.02263 6.03601 6.09082 6.11268 6.26091 6.29296 6.36598 6.52052 6.70389 6.72946 6.76978 7.06676 7.34097 7.57609 8.48883 8.97303 9.51061 11.05606 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003888 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.289134 B = 7200.416636 C = 7879.806014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.098 3.902 4 C -0.048 4.048 5 C -0.121 4.121 6 C -0.020 4.020 7 C -0.666 4.666 8 S 2.684 3.316 9 O -0.938 6.938 10 O -0.969 6.969 11 N -0.971 5.971 12 C 0.227 3.773 13 C -0.530 4.530 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.870 3.130 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.149 3.851 22 C -0.173 4.173 23 C -0.175 4.175 24 C -0.179 4.179 25 C -0.023 4.023 26 C -0.123 4.123 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 0.755 9.477 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.022 3.978 4 C -0.049 4.049 5 C -0.140 4.140 6 C -0.039 4.039 7 C -0.750 4.750 8 S 2.772 3.228 9 O -0.928 6.928 10 O -0.959 6.959 11 N -0.808 5.808 12 C 0.104 3.896 13 C -0.569 4.569 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.697 3.303 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.189 1.189 21 C 0.023 3.977 22 C -0.193 4.193 23 C -0.212 4.212 24 C -0.217 4.217 25 C -0.042 4.042 26 C -0.142 4.142 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.159 0.841 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.605 -0.133 9.306 22.610 hybrid contribution -1.508 1.239 -0.783 2.103 sum -22.114 1.106 8.523 23.725 Atomic orbital electron populations 1.22782 0.80760 1.03020 1.00062 1.87993 1.19783 1.27045 1.95426 1.21431 0.89693 0.85390 1.01318 1.19809 0.93991 0.97197 0.93865 1.21156 0.94296 1.00837 0.97712 1.21022 0.94419 0.91248 0.97204 1.31588 1.28953 1.15349 0.99149 1.02323 0.73349 0.73476 0.73656 1.93613 1.81136 1.74993 1.43066 1.93508 1.82137 1.75762 1.44537 1.57160 1.76594 1.34392 1.12698 1.19490 0.97891 0.93108 0.79154 1.21359 0.93427 1.34361 1.07778 0.90265 1.24845 0.94892 0.95931 0.97171 1.69892 1.13569 1.44975 1.24838 0.86944 0.81795 0.80797 0.80763 1.20039 1.20892 1.18882 1.20882 0.96102 0.96055 0.84654 1.22970 1.00896 0.95066 1.00414 1.23002 1.03157 0.93835 1.01206 1.22916 1.02957 1.05098 0.90725 1.20915 0.94365 0.92104 0.96833 1.21109 0.94283 1.01236 0.97585 0.93953 0.93909 0.89388 0.92031 0.91991 0.85154 0.83838 0.94859 0.94901 0.92524 0.88829 0.89400 0.88049 0.88267 0.89382 0.89219 0.88580 0.84121 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -4.02 10.69 -35.23 -0.38 -4.40 16 3 C 0.10 0.90 6.06 36.01 0.22 1.11 16 4 C -0.05 -0.57 5.51 -104.62 -0.58 -1.14 16 5 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 6 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 7 C -0.67 -10.68 5.97 -39.58 -0.24 -10.92 16 8 S 2.68 52.60 5.65 -107.50 -0.61 52.00 16 9 O -0.94 -21.82 16.25 -57.17 -0.93 -22.75 16 10 O -0.97 -19.61 15.83 -57.17 -0.91 -20.52 16 11 N -0.97 -19.16 2.77 -115.66 -0.32 -19.48 16 12 C 0.23 5.17 4.17 -5.19 -0.02 5.15 16 13 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C 0.07 2.12 5.47 -17.81 -0.10 2.02 16 16 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 17 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 21 C 0.15 2.49 5.96 -4.04 -0.02 2.46 16 22 C -0.17 -2.39 6.01 -90.62 -0.54 -2.93 16 23 C -0.18 -2.20 10.18 -26.73 -0.27 -2.47 16 24 C -0.18 -2.01 10.25 -26.73 -0.27 -2.29 16 25 C -0.02 -0.32 9.10 -39.58 -0.36 -0.68 16 26 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.14 2.17 7.62 -52.49 -0.40 1.77 16 34 H 0.03 0.76 6.67 -51.93 -0.35 0.42 16 35 H 0.03 0.71 7.53 -51.93 -0.39 0.32 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.61 7.84 -51.93 -0.41 1.21 16 38 H 0.09 1.39 6.91 -51.93 -0.36 1.03 16 39 H 0.10 1.37 7.71 -51.93 -0.40 0.97 16 40 H 0.10 1.29 8.03 -51.93 -0.42 0.88 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.14 1.75 7.61 -52.49 -0.40 1.35 16 45 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.47 389.35 -10.66 -45.13 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.93 Total: 2.33 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.56 Total: -27.88 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.45 Total: -45.86 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.21 Total: -47.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.61 Total: 52.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.47 -10.66 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340979809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.862 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds