Wall clock time and date at job start Tue Mar 31 2020 23:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00148 * 2 1 4 4 C 1.50701 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99840 * 89.99681 * 4 3 2 6 6 C 1.38242 * 119.99556 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00124 * 0.02562 * 6 5 4 8 8 S 1.76196 * 119.99859 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.39984 * 336.45348 * 8 7 6 10 10 O 1.42105 * 106.39961 * 203.54103 * 8 7 6 11 11 N 1.65593 * 107.22113 * 90.00020 * 8 7 6 12 12 C 1.46502 * 119.99605 * 269.99694 * 11 8 7 13 13 C 1.50700 * 109.47099 * 264.99737 * 12 11 8 14 14 H 1.07992 * 120.00396 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99754 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46668 * 90.00094 * 17 15 13 19 19 H 1.48496 * 109.47387 * 210.00050 * 17 15 13 20 20 H 1.48500 * 109.47094 * 330.00171 * 17 15 13 21 21 C 1.46499 * 120.00395 * 89.99978 * 11 8 7 22 22 C 1.53000 * 109.46840 * 265.00156 * 21 11 8 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.38233 * 120.00111 * 0.25270 * 7 6 5 26 26 C 1.38234 * 119.99840 * 269.97648 * 4 3 2 27 27 H 1.09000 * 109.46720 * 300.00001 * 1 2 3 28 28 H 1.08997 * 109.47504 * 59.99918 * 1 2 3 29 29 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47085 * 59.99762 * 3 2 1 31 31 H 1.09007 * 109.46898 * 300.00193 * 3 2 1 32 32 H 1.08003 * 120.00327 * 359.97438 * 5 4 3 33 33 H 1.07997 * 119.99502 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47474 * 25.00485 * 12 11 8 35 35 H 1.09003 * 109.46943 * 145.00256 * 12 11 8 36 36 H 0.96994 * 119.99602 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47391 * 144.99826 * 21 11 8 38 38 H 1.09001 * 109.46813 * 24.99883 * 21 11 8 39 39 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 40 40 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 42 42 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 43 43 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 44 44 H 1.07990 * 120.00334 * 179.72905 * 25 7 6 45 45 H 1.08004 * 120.00152 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2011 1.1320 -1.1981 6 6 5.5792 1.0233 -1.1986 7 6 6.2687 0.9686 -0.0018 8 16 8.0252 0.8294 -0.0025 9 8 8.3816 0.2550 -1.2524 10 8 8.3826 0.2548 1.2471 11 7 8.6388 2.3675 -0.0025 12 6 8.9097 3.0479 -1.2714 13 6 10.3571 2.8563 -1.6450 14 1 11.0097 2.2846 -1.0020 15 6 10.8480 3.4111 -2.8080 16 7 12.1110 3.2435 -3.1343 17 14 9.7194 4.4006 -3.9199 18 1 9.7556 5.8293 -3.5165 19 1 10.1742 4.2720 -5.3276 20 1 8.3312 3.8872 -3.7993 21 6 8.9108 3.0477 1.2661 22 6 7.7110 3.9181 1.6454 23 6 7.9299 5.4308 1.7159 24 6 7.7508 4.6230 3.0028 25 6 5.5797 1.0172 1.1957 26 6 4.2021 1.1321 1.1962 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.6624 1.1743 -2.1332 33 1 6.1171 0.9812 -2.1342 34 1 8.2745 2.6285 -2.0515 35 1 8.6998 4.1122 -1.1649 36 1 12.4563 3.6334 -3.9526 37 1 9.7957 3.6752 1.1596 38 1 9.0829 2.3063 2.0463 39 1 6.7430 3.5655 1.2897 40 1 8.9285 5.8059 1.4916 41 1 7.1058 6.0735 1.4063 42 1 6.8088 4.7343 3.5399 43 1 8.6314 4.4663 3.6258 44 1 6.1180 0.9701 2.1307 45 1 3.6641 1.1745 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340979809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:35 Heat of formation + Delta-G solvation = -82.424712 kcal Electronic energy + Delta-G solvation = -27938.361423 eV Core-core repulsion = 24048.337554 eV Total energy + Delta-G solvation = -3890.023869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55472 -38.92415 -38.54239 -38.32976 -36.92081 -36.42948 -34.41418 -33.36148 -32.13051 -30.28071 -28.40831 -27.13417 -26.43972 -24.02286 -23.86779 -23.11719 -22.90971 -21.63317 -20.02965 -19.21030 -18.80582 -18.30052 -17.59235 -17.38238 -17.09063 -17.02545 -16.28708 -16.11971 -15.72029 -15.64237 -15.43925 -14.98449 -14.80737 -14.56879 -14.42613 -14.32578 -13.92707 -13.72066 -13.40141 -13.23291 -13.15996 -13.02401 -12.92684 -12.81974 -12.44960 -12.33350 -12.31395 -12.23918 -12.23261 -12.00393 -11.80047 -11.66384 -11.20740 -10.76314 -10.75398 -10.68229 -10.36165 -10.08080 -9.79212 -8.27597 -6.32937 -0.67001 -0.32136 0.25577 1.36253 1.40546 1.49838 1.93512 2.35893 2.37072 2.78594 2.98936 3.06262 3.07373 3.26774 3.68559 3.77107 3.79319 3.88885 4.00978 4.15130 4.20746 4.23654 4.26576 4.38531 4.48469 4.52318 4.55345 4.59616 4.64507 4.77820 4.84642 4.88782 4.89392 4.92237 4.96142 5.04434 5.06027 5.11342 5.29803 5.35650 5.35910 5.39470 5.49269 5.74705 5.77240 6.16165 6.31469 6.69811 7.29632 8.90002 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003888 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.289134 B = 7200.416636 C = 7879.806014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.097 3.903 4 C -0.043 4.043 5 C -0.121 4.121 6 C -0.041 4.041 7 C -0.670 4.670 8 S 2.685 3.315 9 O -0.989 6.989 10 O -0.987 6.987 11 N -0.978 5.978 12 C 0.237 3.763 13 C -0.540 4.540 14 H 0.030 0.970 15 C 0.009 3.991 16 N -0.948 5.948 17 Si 0.940 3.060 18 H -0.254 1.254 19 H -0.284 1.284 20 H -0.240 1.240 21 C 0.145 3.855 22 C -0.188 4.188 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.029 4.029 26 C -0.116 4.116 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.267 0.733 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.150 0.850 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.195 2.533 10.473 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.021 3.979 4 C -0.043 4.043 5 C -0.140 4.140 6 C -0.060 4.060 7 C -0.760 4.760 8 S 2.780 3.220 9 O -0.980 6.980 10 O -0.977 6.977 11 N -0.815 5.815 12 C 0.113 3.887 13 C -0.579 4.579 14 H 0.048 0.952 15 C -0.189 4.189 16 N -0.588 5.588 17 Si 0.762 3.238 18 H -0.178 1.178 19 H -0.209 1.209 20 H -0.163 1.163 21 C 0.019 3.981 22 C -0.208 4.208 23 C -0.216 4.216 24 C -0.193 4.193 25 C -0.048 4.048 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.168 0.832 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.440 1.642 10.343 27.512 hybrid contribution -0.048 0.582 -0.980 1.141 sum -25.489 2.224 9.362 27.245 Atomic orbital electron populations 1.22964 0.78912 1.03872 1.01343 1.87939 1.21835 1.27766 1.95724 1.21535 0.87521 0.85415 1.03420 1.20244 0.95886 0.94869 0.93301 1.21430 0.93117 0.99903 0.99503 1.21082 0.95823 0.92656 0.96443 1.30776 1.25407 1.18934 1.00906 1.01736 0.74906 0.73036 0.72369 1.93542 1.83131 1.76221 1.45057 1.93468 1.83493 1.76139 1.44623 1.57028 1.77673 1.34143 1.12669 1.19212 0.94436 0.94423 0.80648 1.21670 0.95612 1.33340 1.07296 0.95205 1.25886 0.96611 0.97336 0.99018 1.70070 1.16081 1.46881 1.25803 0.85830 0.80359 0.79809 0.77822 1.17794 1.20931 1.16300 1.21007 0.97340 0.96292 0.83431 1.22788 0.99476 0.95278 1.03215 1.23068 1.03177 0.93015 1.02334 1.23043 1.04405 1.02143 0.89756 1.21122 0.95566 0.91978 0.96129 1.21488 0.93277 0.99455 0.99232 0.92468 0.92789 0.88902 0.89632 0.90295 0.82794 0.84930 0.94636 0.92795 0.92368 0.90502 0.89244 0.87349 0.89426 0.87823 0.86659 0.88169 0.83204 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.10 10.69 -148.98 -1.59 -8.69 16 3 C 0.10 1.32 6.06 71.24 0.43 1.75 16 4 C -0.04 -0.84 5.51 -19.87 -0.11 -0.95 16 5 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 6 C -0.04 -1.20 9.52 22.27 0.21 -0.99 16 7 C -0.67 -21.18 5.97 22.27 0.13 -21.05 16 8 S 2.68 109.66 5.65 -56.49 -0.32 109.34 16 9 O -0.99 -48.91 16.25 -128.00 -2.08 -50.99 16 10 O -0.99 -41.55 15.83 -128.00 -2.03 -43.58 16 11 N -0.98 -39.93 2.77 -519.84 -1.44 -41.37 16 12 C 0.24 11.04 4.17 85.63 0.36 11.40 16 13 C -0.54 -31.58 9.94 25.60 0.25 -31.32 16 14 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 15 C 0.01 0.54 5.47 84.66 0.46 1.01 16 16 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 17 Si 0.94 42.86 27.47 68.60 1.88 44.74 16 18 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 21 C 0.14 4.94 5.96 86.38 0.51 5.45 16 22 C -0.19 -4.88 6.01 -10.79 -0.06 -4.95 16 23 C -0.18 -4.13 10.18 30.60 0.31 -3.82 16 24 C -0.16 -3.07 10.25 30.60 0.31 -2.75 16 25 C -0.03 -0.73 9.10 22.27 0.20 -0.52 16 26 C -0.12 -2.29 9.70 22.27 0.22 -2.07 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.08 0.82 8.09 -2.38 -0.02 0.80 16 32 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.13 4.10 7.62 -2.91 -0.02 4.08 16 34 H 0.04 1.65 6.67 -2.39 -0.02 1.63 16 35 H 0.05 2.29 7.53 -2.39 -0.02 2.27 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.08 2.81 7.84 -2.39 -0.02 2.79 16 38 H 0.09 2.94 6.91 -2.39 -0.02 2.92 16 39 H 0.11 2.69 7.71 -2.39 -0.02 2.67 16 40 H 0.09 2.21 8.03 -2.39 -0.02 2.20 16 41 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.15 3.44 7.61 -2.92 -0.02 3.42 16 45 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -79.79 389.35 0.34 -79.45 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.92 Total: 20.94 kcal Atomic # 6 Polarization: -54.55 SS G_CDS: 4.70 Total: -49.85 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -1.14 Total: -101.35 kcal Atomic # 8 Polarization: -97.56 SS G_CDS: -5.70 Total: -103.26 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 109.66 SS G_CDS: -0.32 Total: 109.34 kcal Total: -79.79 0.34 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340979809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.976 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds