Wall clock time and date at job start Tue Mar 31 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35601 * 116.99741 * 2 1 4 4 C 1.38691 * 120.16827 * 0.02562 * 3 2 1 5 5 C 1.38060 * 120.10806 * 179.97438 * 4 3 2 6 6 C 1.38622 * 120.45793 * 359.97438 * 5 4 3 7 7 C 1.37680 * 120.33705 * 0.02562 * 6 5 4 8 8 C 1.40014 * 119.87973 * 359.97438 * 7 6 5 9 9 C 1.46788 * 120.22222 * 179.97438 * 8 7 6 10 10 O 1.21300 * 120.00106 * 179.97438 * 9 8 7 11 11 C 1.50707 * 119.99855 * 0.02562 * 9 8 7 12 12 N 1.46499 * 109.46689 * 179.97438 * 11 9 8 13 13 C 1.34782 * 119.99648 * 179.97438 * 12 11 9 14 14 O 1.21585 * 119.99667 * 0.02562 * 13 12 11 15 15 C 1.47642 * 120.00160 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89307 * 359.72323 * 15 13 12 17 17 C 1.36321 * 120.10540 * 179.71696 * 16 15 13 18 18 C 1.40886 * 119.88765 * 0.58152 * 17 16 15 19 19 C 1.41106 * 120.10110 * 179.67359 * 18 17 16 20 20 H 1.07998 * 120.00204 * 204.65416 * 19 18 17 21 21 C 1.40234 * 120.00042 * 24.64957 * 19 18 17 22 22 N 1.30649 * 119.99780 * 17.87062 * 21 19 18 23 23 Si 1.86801 * 120.00144 * 197.86148 * 21 19 18 24 24 H 1.48504 * 109.46760 * 60.00573 * 23 21 19 25 25 H 1.48501 * 109.47033 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47275 * 300.00506 * 23 21 19 27 27 C 1.40884 * 119.79707 * 359.69411 * 18 17 16 28 28 C 1.36319 * 119.88909 * 359.97438 * 27 18 17 29 29 H 1.08992 * 109.47581 * 299.99545 * 1 2 3 30 30 H 1.09003 * 109.47029 * 60.00585 * 1 2 3 31 31 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94841 * 0.25633 * 4 3 2 33 33 H 1.08002 * 119.76880 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.82926 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.05579 * 180.02562 * 7 6 5 36 36 H 1.08992 * 109.46866 * 299.99856 * 11 9 8 37 37 H 1.09003 * 109.46780 * 59.99958 * 11 9 8 38 38 H 0.97001 * 120.00718 * 0.02562 * 12 11 9 39 39 H 1.08000 * 119.94727 * 0.02562 * 16 15 13 40 40 H 1.07997 * 120.05122 * 180.25533 * 17 16 15 41 41 H 0.96997 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.05745 * 179.97438 * 27 18 17 43 43 H 1.08006 * 119.94633 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9205 3.6031 0.0011 6 6 3.3043 3.6853 0.0016 7 6 4.0690 2.5404 0.0011 8 6 3.4468 1.2860 0.0006 9 6 4.2547 0.0605 -0.0006 10 8 3.7115 -1.0240 -0.0006 11 6 5.7591 0.1498 -0.0006 12 7 6.3283 -1.2001 -0.0012 13 6 7.6657 -1.3675 -0.0018 14 8 8.3997 -0.3981 -0.0014 15 6 8.2395 -2.7278 -0.0030 16 6 7.3922 -3.8425 0.0024 17 6 7.9173 -5.1005 -0.0045 18 6 9.3149 -5.2779 -0.0047 19 6 9.8633 -6.5781 -0.0048 20 1 10.8564 -6.7454 0.3852 21 6 9.1187 -7.6530 -0.5113 22 7 8.0919 -7.4283 -1.2873 23 14 9.5950 -9.4063 -0.0768 24 1 9.5291 -9.5865 1.3958 25 1 8.6570 -10.3514 -0.7342 26 1 10.9778 -9.6745 -0.5470 27 6 10.1634 -4.1532 -0.0042 28 6 9.6290 -2.8991 -0.0042 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2139 2.3192 0.0051 33 1 1.3296 4.5071 0.0011 34 1 3.7850 4.6524 0.0016 35 1 5.1467 2.6097 0.0019 36 1 6.0913 0.6850 -0.8901 37 1 6.0914 0.6835 0.8899 38 1 5.7428 -1.9734 -0.0019 39 1 6.3210 -3.7054 0.0070 40 1 7.2629 -5.9597 -0.0045 41 1 7.5770 -8.1718 -1.6379 42 1 11.2354 -4.2843 -0.0039 43 1 10.2786 -2.0363 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342326079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:09 Heat of formation + Delta-G solvation = -64.523911 kcal Electronic energy + Delta-G solvation = -27298.701348 eV Core-core repulsion = 23274.009764 eV Total energy + Delta-G solvation = -4024.691584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83971 -39.40575 -38.47434 -37.63635 -37.00683 -33.92693 -33.83192 -32.09477 -30.51356 -30.31420 -29.40006 -28.25906 -27.33835 -25.63794 -23.93319 -22.39199 -21.76615 -20.91795 -20.10705 -19.66434 -18.38797 -17.49256 -17.24707 -16.68638 -16.17186 -16.13312 -15.56038 -15.37700 -15.29061 -15.03256 -14.62260 -14.27865 -13.95167 -13.89101 -13.79470 -13.24623 -13.11738 -12.92902 -12.65218 -12.57242 -12.24073 -12.04461 -11.92886 -11.84570 -11.56951 -11.49633 -11.32031 -11.23085 -10.95901 -10.60689 -10.03182 -9.76883 -9.51250 -9.43882 -9.30462 -8.98823 -8.66255 -8.60415 -7.67102 -7.50519 -6.99594 -4.56499 0.38934 1.03159 2.23881 2.27360 2.89733 2.95026 2.97081 3.01183 3.08824 3.43755 3.50394 3.76685 3.89278 4.06172 4.35193 4.48346 4.60021 4.69724 4.77373 4.80483 4.91752 5.08076 5.15287 5.20028 5.45388 5.46543 5.48765 5.62927 5.78935 5.88081 6.04628 6.09115 6.14936 6.30420 6.35964 6.81292 6.86495 6.88813 7.00407 7.08709 7.17896 7.46322 7.48021 7.69549 7.84084 7.90373 8.11075 8.26292 8.44247 8.66869 8.79695 9.06962 9.92348 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002164 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.428263 B =12933.318927 C =14384.869130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.284 6.284 3 C 0.185 3.815 4 C -0.227 4.227 5 C -0.048 4.048 6 C -0.172 4.172 7 C -0.033 4.033 8 C -0.201 4.201 9 C 0.388 3.612 10 O -0.429 6.429 11 C 0.081 3.919 12 N -0.736 5.736 13 C 0.575 3.425 14 O -0.577 6.577 15 C -0.284 4.284 16 C -0.061 4.061 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.442 4.442 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.771 5.771 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.240 4.240 28 C -0.021 4.021 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.407 0.593 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.847 16.060 1.685 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.195 6.195 3 C 0.137 3.863 4 C -0.246 4.246 5 C -0.066 4.066 6 C -0.190 4.190 7 C -0.051 4.051 8 C -0.203 4.203 9 C 0.264 3.736 10 O -0.302 6.302 11 C -0.044 4.044 12 N -0.392 5.392 13 C 0.370 3.630 14 O -0.460 6.460 15 C -0.289 4.289 16 C -0.081 4.081 17 C -0.197 4.197 18 C 0.125 3.875 19 C -0.470 4.470 20 H 0.103 0.897 21 C -0.148 4.148 22 N -0.394 5.394 23 Si 0.738 3.262 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.259 4.259 28 C -0.040 4.040 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.245 0.755 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.754 15.816 1.528 22.376 hybrid contribution -0.548 -0.816 0.026 0.983 sum -16.303 15.000 1.553 22.208 Atomic orbital electron populations 1.23187 0.78383 1.04569 1.01221 1.86328 1.21136 1.25621 1.86407 1.19303 0.91286 0.84903 0.90828 1.21258 1.00376 0.92133 1.10784 1.21193 0.94859 0.97050 0.93499 1.21050 0.93757 0.98774 1.05431 1.21426 1.00720 0.90422 0.92544 1.19853 0.90811 0.95565 1.14069 1.22301 0.90747 0.88045 0.72518 1.90582 1.74678 1.30024 1.34951 1.21387 0.90928 0.87903 1.04201 1.45751 1.07868 1.07266 1.78361 1.18587 0.80374 0.90012 0.74038 1.90621 1.59809 1.42383 1.53181 1.18840 0.94077 0.90106 1.25854 1.20535 0.96642 0.93080 0.97803 1.20981 0.95573 0.95556 1.07639 1.17792 0.91866 0.92542 0.85254 1.19814 1.01955 0.91604 1.33622 0.89737 1.26113 0.93804 1.02372 0.92481 1.69741 1.14280 1.35198 1.20142 0.86257 0.79650 0.80105 0.80219 1.18475 1.20073 1.18681 1.20703 0.98104 0.92213 1.14892 1.20350 0.93089 0.96381 0.94208 0.92501 0.92492 0.87758 0.84855 0.85301 0.85036 0.83947 0.88552 0.88557 0.75471 0.89115 0.86173 0.90157 0.88367 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.47 8.57 -40.41 -0.35 -3.81 16 3 C 0.18 2.08 6.71 -38.58 -0.26 1.82 16 4 C -0.23 -1.85 9.03 -39.48 -0.36 -2.21 16 5 C -0.05 -0.33 10.03 -39.51 -0.40 -0.72 16 6 C -0.17 -1.24 10.02 -39.64 -0.40 -1.64 16 7 C -0.03 -0.29 9.46 -39.12 -0.37 -0.66 16 8 C -0.20 -2.35 5.88 -104.95 -0.62 -2.97 16 9 C 0.39 5.49 7.18 -30.85 -0.22 5.27 16 10 O -0.43 -7.36 14.48 -16.37 -0.24 -7.59 16 11 C 0.08 1.17 4.76 -5.19 -0.02 1.15 16 12 N -0.74 -13.56 5.48 -62.49 -0.34 -13.90 16 13 C 0.57 12.64 7.76 -12.42 -0.10 12.54 16 14 O -0.58 -13.66 16.32 5.29 0.09 -13.57 16 15 C -0.28 -6.75 5.89 -104.73 -0.62 -7.36 16 16 C -0.06 -1.44 9.47 -39.61 -0.38 -1.82 16 17 C -0.18 -4.54 8.63 -39.27 -0.34 -4.87 16 18 C 0.13 3.36 5.57 -106.81 -0.60 2.76 16 19 C -0.44 -11.20 9.04 -37.75 -0.34 -11.54 16 20 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 21 C 0.07 1.75 5.14 -17.31 -0.09 1.67 16 22 N -0.77 -18.93 10.95 55.56 0.61 -18.32 16 23 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 27 C -0.24 -5.91 9.73 -39.27 -0.38 -6.29 16 28 C -0.02 -0.51 9.52 -39.61 -0.38 -0.88 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 1.03 7.05 -52.49 -0.37 0.66 16 36 H 0.10 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 38 H 0.41 7.48 5.44 -40.82 -0.22 7.26 16 39 H 0.09 1.91 6.37 -52.49 -0.33 1.57 16 40 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 41 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -32.01 369.32 -9.42 -41.42 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.86 Total: 12.26 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.86 Total: -14.63 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.27 Total: -32.22 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.50 Total: -24.98 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.01 -9.42 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342326079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.101 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds