Wall clock time and date at job start Tue Mar 31 2020 23:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35601 * 116.99741 * 2 1 4 4 C 1.38691 * 120.16827 * 0.02562 * 3 2 1 5 5 C 1.38060 * 120.10806 * 179.97438 * 4 3 2 6 6 C 1.38622 * 120.45793 * 359.97438 * 5 4 3 7 7 C 1.37680 * 120.33705 * 0.02562 * 6 5 4 8 8 C 1.40014 * 119.87973 * 359.97438 * 7 6 5 9 9 C 1.46788 * 120.22222 * 179.97438 * 8 7 6 10 10 O 1.21300 * 120.00106 * 179.97438 * 9 8 7 11 11 C 1.50707 * 119.99855 * 0.02562 * 9 8 7 12 12 N 1.46499 * 109.46689 * 179.97438 * 11 9 8 13 13 C 1.34782 * 119.99648 * 179.97438 * 12 11 9 14 14 O 1.21585 * 119.99667 * 0.02562 * 13 12 11 15 15 C 1.47642 * 120.00160 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89307 * 359.72323 * 15 13 12 17 17 C 1.36321 * 120.10540 * 179.71696 * 16 15 13 18 18 C 1.40886 * 119.88765 * 0.58152 * 17 16 15 19 19 C 1.41106 * 120.10110 * 179.67359 * 18 17 16 20 20 H 1.07998 * 120.00204 * 204.65416 * 19 18 17 21 21 C 1.40234 * 120.00042 * 24.64957 * 19 18 17 22 22 N 1.30649 * 119.99780 * 17.87062 * 21 19 18 23 23 Si 1.86801 * 120.00144 * 197.86148 * 21 19 18 24 24 H 1.48504 * 109.46760 * 60.00573 * 23 21 19 25 25 H 1.48501 * 109.47033 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47275 * 300.00506 * 23 21 19 27 27 C 1.40884 * 119.79707 * 359.69411 * 18 17 16 28 28 C 1.36319 * 119.88909 * 359.97438 * 27 18 17 29 29 H 1.08992 * 109.47581 * 299.99545 * 1 2 3 30 30 H 1.09003 * 109.47029 * 60.00585 * 1 2 3 31 31 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94841 * 0.25633 * 4 3 2 33 33 H 1.08002 * 119.76880 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.82926 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.05579 * 180.02562 * 7 6 5 36 36 H 1.08992 * 109.46866 * 299.99856 * 11 9 8 37 37 H 1.09003 * 109.46780 * 59.99958 * 11 9 8 38 38 H 0.97001 * 120.00718 * 0.02562 * 12 11 9 39 39 H 1.08000 * 119.94727 * 0.02562 * 16 15 13 40 40 H 1.07997 * 120.05122 * 180.25533 * 17 16 15 41 41 H 0.96997 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.05745 * 179.97438 * 27 18 17 43 43 H 1.08006 * 119.94633 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9205 3.6031 0.0011 6 6 3.3043 3.6853 0.0016 7 6 4.0690 2.5404 0.0011 8 6 3.4468 1.2860 0.0006 9 6 4.2547 0.0605 -0.0006 10 8 3.7115 -1.0240 -0.0006 11 6 5.7591 0.1498 -0.0006 12 7 6.3283 -1.2001 -0.0012 13 6 7.6657 -1.3675 -0.0018 14 8 8.3997 -0.3981 -0.0014 15 6 8.2395 -2.7278 -0.0030 16 6 7.3922 -3.8425 0.0024 17 6 7.9173 -5.1005 -0.0045 18 6 9.3149 -5.2779 -0.0047 19 6 9.8633 -6.5781 -0.0048 20 1 10.8564 -6.7454 0.3852 21 6 9.1187 -7.6530 -0.5113 22 7 8.0919 -7.4283 -1.2873 23 14 9.5950 -9.4063 -0.0768 24 1 9.5291 -9.5865 1.3958 25 1 8.6570 -10.3514 -0.7342 26 1 10.9778 -9.6745 -0.5470 27 6 10.1634 -4.1532 -0.0042 28 6 9.6290 -2.8991 -0.0042 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2139 2.3192 0.0051 33 1 1.3296 4.5071 0.0011 34 1 3.7850 4.6524 0.0016 35 1 5.1467 2.6097 0.0019 36 1 6.0913 0.6850 -0.8901 37 1 6.0914 0.6835 0.8899 38 1 5.7428 -1.9734 -0.0019 39 1 6.3210 -3.7054 0.0070 40 1 7.2629 -5.9597 -0.0045 41 1 7.5770 -8.1718 -1.6379 42 1 11.2354 -4.2843 -0.0039 43 1 10.2786 -2.0363 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342326079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:08 Heat of formation + Delta-G solvation = -82.226902 kcal Electronic energy + Delta-G solvation = -27299.469007 eV Core-core repulsion = 23274.009764 eV Total energy + Delta-G solvation = -4025.459243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69223 -40.82141 -39.79584 -38.82927 -38.32121 -35.68302 -35.45470 -32.94195 -32.08467 -31.31503 -31.13254 -29.43993 -28.16062 -27.30084 -24.85418 -23.61453 -22.94488 -22.75967 -21.33546 -21.11317 -19.37638 -19.19025 -18.67155 -17.64665 -17.26484 -17.00277 -16.98250 -16.71118 -16.51605 -15.92105 -15.74522 -15.64258 -15.35300 -15.29988 -14.98745 -14.71120 -14.44855 -14.25030 -13.87772 -13.79504 -13.62883 -13.40235 -13.18681 -13.10857 -12.85758 -12.64220 -12.54311 -12.36996 -12.16898 -12.08188 -11.80029 -11.38714 -11.13061 -10.90560 -10.70595 -10.22720 -10.06797 -9.59363 -9.43170 -9.29576 -8.80274 -6.49453 -0.37775 0.40089 0.41644 1.14019 1.33145 1.38040 1.44079 1.52145 2.09187 2.16499 2.17389 2.28170 2.75345 2.77467 2.89832 3.67679 3.73603 3.88470 4.06320 4.17700 4.21975 4.28755 4.32522 4.33667 4.34411 4.40282 4.44727 4.46690 4.52223 4.68477 4.88475 4.91813 5.01512 5.13860 5.14652 5.28141 5.30770 5.40836 5.47326 5.57559 5.74619 5.80164 5.92401 5.98466 6.20677 6.34084 6.42591 6.52483 6.59058 6.75473 6.87330 7.34620 8.14807 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002164 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.428263 B =12933.318927 C =14384.869130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.164 3.836 4 C -0.229 4.229 5 C -0.037 4.037 6 C -0.170 4.170 7 C -0.035 4.035 8 C -0.232 4.232 9 C 0.394 3.606 10 O -0.471 6.471 11 C 0.077 3.923 12 N -0.729 5.729 13 C 0.577 3.423 14 O -0.596 6.596 15 C -0.296 4.296 16 C -0.057 4.057 17 C -0.199 4.199 18 C 0.101 3.899 19 C -0.470 4.470 20 H 0.089 0.911 21 C 0.035 3.965 22 N -0.799 5.799 23 Si 0.990 3.010 24 H -0.258 1.258 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.251 4.251 28 C -0.028 4.028 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.407 0.593 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.297 0.703 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 17.733 1.839 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.116 3.884 4 C -0.247 4.247 5 C -0.055 4.055 6 C -0.188 4.188 7 C -0.053 4.053 8 C -0.234 4.234 9 C 0.273 3.727 10 O -0.348 6.348 11 C -0.047 4.047 12 N -0.383 5.383 13 C 0.371 3.629 14 O -0.480 6.480 15 C -0.300 4.300 16 C -0.076 4.076 17 C -0.219 4.219 18 C 0.098 3.902 19 C -0.497 4.497 20 H 0.107 0.893 21 C -0.184 4.184 22 N -0.423 5.423 23 Si 0.810 3.190 24 H -0.182 1.182 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.270 4.270 28 C -0.048 4.048 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.245 0.755 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.995 17.533 1.677 24.476 hybrid contribution -0.281 -1.161 -0.047 1.195 sum -17.277 16.373 1.631 23.858 Atomic orbital electron populations 1.23427 0.76414 1.05428 1.02789 1.86272 1.23450 1.26869 1.86708 1.19620 0.91465 0.85650 0.91627 1.21565 1.01498 0.91547 1.10093 1.21685 0.95118 0.97778 0.90907 1.21451 0.94106 0.99295 1.03943 1.21646 1.01620 0.89966 0.92113 1.19805 0.91198 0.95252 1.17157 1.22495 0.90458 0.88623 0.71107 1.90563 1.75114 1.31547 1.37595 1.21678 0.91539 0.85834 1.05632 1.45669 1.06686 1.09158 1.76748 1.18308 0.81426 0.89001 0.74210 1.90601 1.60527 1.42536 1.54314 1.19135 0.94229 0.91296 1.25366 1.20700 0.97735 0.92482 0.96705 1.20993 0.95546 0.95971 1.09341 1.18148 0.92450 0.93552 0.86066 1.20116 1.02765 0.92239 1.34614 0.89257 1.27012 0.93386 1.06416 0.91615 1.69777 1.15027 1.37025 1.20438 0.85121 0.79629 0.74408 0.79885 1.18185 1.18931 1.17962 1.20875 0.98683 0.92243 1.15230 1.20524 0.93643 0.96486 0.94104 0.90827 0.90881 0.87441 0.82588 0.81746 0.82144 0.82737 0.87094 0.86951 0.75527 0.87153 0.87100 0.89196 0.87270 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.95 8.57 -68.16 -0.58 -8.53 16 3 C 0.16 3.58 6.71 22.92 0.15 3.74 16 4 C -0.23 -3.17 9.03 22.34 0.20 -2.97 16 5 C -0.04 -0.37 10.03 22.32 0.22 -0.14 16 6 C -0.17 -1.87 10.02 22.23 0.22 -1.65 16 7 C -0.04 -0.56 9.46 22.57 0.21 -0.35 16 8 C -0.23 -5.33 5.88 -20.07 -0.12 -5.45 16 9 C 0.39 11.33 7.18 27.93 0.20 11.53 16 10 O -0.47 -16.84 14.48 17.86 0.26 -16.58 16 11 C 0.08 2.21 4.76 85.64 0.41 2.62 16 12 N -0.73 -26.94 5.48 -469.88 -2.57 -29.51 16 13 C 0.58 25.43 7.76 86.73 0.67 26.10 16 14 O -0.60 -28.00 16.32 -3.99 -0.07 -28.06 16 15 C -0.30 -14.26 5.89 -19.94 -0.12 -14.38 16 16 C -0.06 -2.75 9.47 22.25 0.21 -2.54 16 17 C -0.20 -10.47 8.63 22.47 0.19 -10.27 16 18 C 0.10 5.43 5.57 -21.28 -0.12 5.31 16 19 C -0.47 -24.26 9.04 23.46 0.21 -24.05 16 20 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 21 C 0.03 1.66 5.14 85.35 0.44 2.10 16 22 N -0.80 -39.79 10.95 21.87 0.24 -39.55 16 23 Si 0.99 35.72 29.60 68.60 2.03 37.75 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 25 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 26 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 27 C -0.25 -12.69 9.73 22.47 0.22 -12.47 16 28 C -0.03 -1.39 9.52 22.25 0.21 -1.18 16 29 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 31 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 33 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.16 1.93 7.05 -2.91 -0.02 1.91 16 36 H 0.11 2.88 8.09 -2.39 -0.02 2.86 16 37 H 0.11 2.88 8.09 -2.39 -0.02 2.86 16 38 H 0.41 15.22 5.44 -92.71 -0.50 14.72 16 39 H 0.11 4.74 6.37 -2.91 -0.02 4.72 16 40 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 41 H 0.30 13.21 8.29 -92.71 -0.77 12.44 16 42 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 43 H 0.11 5.11 7.63 -2.91 -0.02 5.09 16 Total: -1.00 -71.40 369.32 4.41 -66.99 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.56 Total: 40.25 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.54 Total: -22.76 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -2.33 Total: -69.06 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.39 Total: -53.17 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -71.40 4.41 -66.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342326079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.232 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds