Wall clock time and date at job start Tue Mar 31 2020 23:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35601 * 116.99571 * 2 1 4 4 C 1.38691 * 120.17517 * 0.26168 * 3 2 1 5 5 C 1.38050 * 120.11140 * 180.29782 * 4 3 2 6 6 C 1.38621 * 120.45447 * 359.69339 * 5 4 3 7 7 C 1.37679 * 120.34028 * 0.02562 * 6 5 4 8 8 C 1.40018 * 119.87981 * 359.97438 * 7 6 5 9 9 C 1.46784 * 120.22240 * 179.97438 * 8 7 6 10 10 O 1.21299 * 119.99935 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00000 * 0.02562 * 9 8 7 12 12 N 1.46504 * 109.47220 * 179.97438 * 11 9 8 13 13 C 1.34771 * 119.99936 * 179.72343 * 12 11 9 14 14 O 1.21554 * 120.00217 * 0.27887 * 13 12 11 15 15 C 1.47887 * 120.00184 * 180.27883 * 13 12 11 16 16 C 1.39925 * 120.02246 * 359.72369 * 15 13 12 17 17 C 1.38322 * 120.35875 * 179.73951 * 16 15 13 18 18 C 1.37749 * 120.41184 * 0.56324 * 17 16 15 19 19 C 1.40753 * 120.03894 * 359.69901 * 18 17 16 20 20 C 1.41443 * 120.17771 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00240 * 24.42839 * 20 19 18 22 22 C 1.39937 * 119.99945 * 204.42711 * 20 19 18 23 23 N 1.30832 * 119.99820 * 17.89101 * 22 20 19 24 24 Si 1.86798 * 120.00242 * 197.88806 * 22 20 19 25 25 H 1.48504 * 109.46669 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47100 * 119.99856 * 24 22 20 27 27 H 1.48492 * 109.47214 * 240.00420 * 24 22 20 28 28 C 1.38995 * 120.02840 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.47116 * 299.99658 * 1 2 3 30 30 H 1.09003 * 109.47469 * 60.00135 * 1 2 3 31 31 H 1.09006 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.08009 * 119.94024 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.76815 * 179.71691 * 5 4 3 34 34 H 1.07998 * 119.83056 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.05751 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.47195 * 59.99805 * 11 9 8 37 37 H 1.08998 * 109.47458 * 300.00398 * 11 9 8 38 38 H 0.96996 * 119.99766 * 0.02562 * 12 11 9 39 39 H 1.08003 * 119.81895 * 0.02562 * 16 15 13 40 40 H 1.07996 * 119.79341 * 180.28039 * 17 16 15 41 41 H 1.07999 * 119.98414 * 179.71730 * 18 17 16 42 42 H 0.96994 * 119.99746 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.19928 * 359.95730 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2083 0.0000 4 6 1.2927 2.3737 0.0055 5 6 1.9206 3.6030 -0.0007 6 6 3.3044 3.6852 -0.0061 7 6 4.0690 2.5402 -0.0058 8 6 3.4468 1.2859 0.0005 9 6 4.2547 0.0604 0.0003 10 8 3.7115 -1.0241 0.0053 11 6 5.7590 0.1496 -0.0061 12 7 6.3283 -1.2003 -0.0044 13 6 7.6656 -1.3677 -0.0150 14 8 8.3994 -0.3987 -0.0208 15 6 8.2402 -2.7303 -0.0195 16 6 7.3961 -3.8462 -0.0069 17 6 7.9260 -5.1239 -0.0165 18 6 9.2905 -5.3128 -0.0268 19 6 10.1555 -4.2024 -0.0340 20 6 11.5569 -4.3930 -0.0451 21 1 11.9742 -5.3097 -0.4350 22 6 12.4029 -3.3938 0.4490 23 7 11.9241 -2.4569 1.2267 24 14 14.2157 -3.3975 -0.0017 25 1 14.5030 -4.5543 -0.8875 26 1 14.5522 -2.1365 -0.7101 27 1 15.0326 -3.5045 1.2337 28 6 9.6193 -2.9036 -0.0298 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2140 2.3192 0.0102 33 1 1.3297 4.5070 -0.0011 34 1 3.7852 4.6522 -0.0105 35 1 5.1468 2.6095 -0.0095 36 1 6.0950 0.6863 0.8812 37 1 6.0877 0.6818 -0.8987 38 1 5.7428 -1.9736 -0.0001 39 1 6.3249 -3.7091 0.0056 40 1 7.2660 -5.9786 -0.0112 41 1 9.6968 -6.3134 -0.0296 42 1 12.5105 -1.7645 1.5694 43 1 10.2747 -2.0452 -0.0353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342329525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:13 Heat of formation + Delta-G solvation = -60.494149 kcal Electronic energy + Delta-G solvation = -27475.456861 eV Core-core repulsion = 23450.940020 eV Total energy + Delta-G solvation = -4024.516840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86753 -39.48378 -38.53456 -37.65586 -36.92414 -34.06591 -33.62616 -32.11562 -30.52995 -30.30997 -29.40094 -28.19074 -27.24927 -25.24515 -24.10159 -22.55459 -22.01197 -20.92632 -20.14927 -19.60603 -18.42843 -17.80397 -16.79386 -16.57676 -16.19909 -16.05565 -15.45153 -15.42917 -15.12983 -15.03867 -14.73231 -14.42500 -14.14439 -13.96613 -13.77500 -13.27304 -13.11708 -12.95724 -12.59553 -12.58135 -12.42824 -12.28004 -11.94236 -11.60629 -11.58863 -11.51746 -11.13413 -11.04353 -10.69669 -10.45604 -10.00737 -9.81259 -9.63987 -9.45528 -9.18970 -9.03704 -8.72762 -8.63033 -7.59370 -7.47668 -6.76892 -4.37535 0.36789 1.01732 2.20673 2.24126 2.84060 2.87103 3.10126 3.15114 3.18122 3.41869 3.42102 3.88196 3.94782 3.99037 4.33432 4.46734 4.66943 4.68261 4.75350 4.77797 4.90143 5.05520 5.12763 5.17612 5.41402 5.43196 5.46960 5.65138 5.74246 5.85806 5.87183 6.03783 6.15517 6.28912 6.35663 6.75430 6.79035 6.97723 7.02275 7.05710 7.25006 7.41936 7.42454 7.74774 7.80061 7.96799 8.11973 8.22448 8.54243 8.83661 8.87055 8.94200 10.17970 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.002231 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.169719 B =12549.239715 C =13821.177381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.185 3.815 4 C -0.227 4.227 5 C -0.047 4.047 6 C -0.171 4.171 7 C -0.033 4.033 8 C -0.201 4.201 9 C 0.390 3.610 10 O -0.430 6.430 11 C 0.078 3.922 12 N -0.731 5.731 13 C 0.567 3.433 14 O -0.547 6.547 15 C -0.128 4.128 16 C -0.215 4.215 17 C -0.098 4.098 18 C -0.210 4.210 19 C 0.097 3.903 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.784 5.784 24 Si 0.909 3.091 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.092 4.092 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.409 0.591 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.283 0.717 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.341 12.285 -1.692 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.195 6.195 3 C 0.137 3.863 4 C -0.246 4.246 5 C -0.065 4.065 6 C -0.190 4.190 7 C -0.051 4.051 8 C -0.203 4.203 9 C 0.266 3.734 10 O -0.304 6.304 11 C -0.047 4.047 12 N -0.388 5.388 13 C 0.358 3.642 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.235 4.235 17 C -0.116 4.116 18 C -0.230 4.230 19 C 0.095 3.905 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.408 5.408 24 Si 0.734 3.266 25 H -0.184 1.184 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.112 4.112 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.962 12.393 -1.542 23.547 hybrid contribution 0.118 0.049 -0.036 0.132 sum -19.845 12.441 -1.578 23.475 Atomic orbital electron populations 1.23186 0.78392 1.04537 1.01249 1.86322 1.21129 1.25645 1.86446 1.19291 0.91259 0.84891 0.90868 1.21255 1.00373 0.92129 1.10796 1.21197 0.94861 0.97066 0.93420 1.21059 0.93757 0.98812 1.05328 1.21440 1.00769 0.90427 0.92450 1.19832 0.90800 0.95522 1.14189 1.22264 0.90644 0.88068 0.72428 1.90572 1.74672 1.30030 1.35117 1.21447 0.91063 0.87681 1.04504 1.45781 1.07729 1.07563 1.77731 1.18848 0.80632 0.90279 0.74433 1.90688 1.59682 1.42010 1.50179 1.19422 0.95016 0.90089 1.08586 1.20415 0.96552 0.92478 1.14048 1.20444 0.94991 0.95308 1.00907 1.21109 0.92740 0.97623 1.11532 1.17607 0.93431 0.90629 0.88877 1.19605 0.90710 1.02530 1.36030 0.90058 1.25967 1.01667 0.94293 0.92679 1.69804 1.38188 1.11168 1.21684 0.86242 0.81623 0.79470 0.79310 1.18358 1.19579 1.19955 1.21636 0.91726 0.98556 0.99251 0.92484 0.92497 0.87778 0.84846 0.85276 0.84994 0.83903 0.88276 0.88313 0.75280 0.88997 0.88833 0.88593 0.90540 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.28 -3.35 8.57 -40.41 -0.35 -3.69 16 3 C 0.18 2.03 6.71 -38.58 -0.26 1.77 16 4 C -0.23 -1.81 9.03 -39.48 -0.36 -2.17 16 5 C -0.05 -0.32 10.03 -39.51 -0.40 -0.72 16 6 C -0.17 -1.24 10.02 -39.64 -0.40 -1.64 16 7 C -0.03 -0.29 9.46 -39.12 -0.37 -0.66 16 8 C -0.20 -2.31 5.88 -104.95 -0.62 -2.93 16 9 C 0.39 5.38 7.17 -30.86 -0.22 5.16 16 10 O -0.43 -7.11 14.48 -16.37 -0.24 -7.35 16 11 C 0.08 1.12 4.76 -5.19 -0.02 1.10 16 12 N -0.73 -13.30 5.48 -62.41 -0.34 -13.64 16 13 C 0.57 12.79 7.77 -12.31 -0.10 12.70 16 14 O -0.55 -13.63 16.33 5.32 0.09 -13.54 16 15 C -0.13 -3.13 5.87 -105.03 -0.62 -3.75 16 16 C -0.21 -4.79 9.55 -38.92 -0.37 -5.16 16 17 C -0.10 -2.19 10.01 -39.73 -0.40 -2.58 16 18 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 19 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 20 C -0.46 -12.23 9.05 -37.73 -0.34 -12.57 16 21 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 22 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 23 N -0.78 -20.94 10.95 55.55 0.61 -20.33 16 24 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 28 C -0.09 -2.49 8.24 -38.44 -0.32 -2.80 16 29 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 30 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.05 7.05 -52.49 -0.37 0.68 16 36 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 37 H 0.10 1.30 8.09 -51.93 -0.42 0.88 16 38 H 0.41 7.23 5.45 -40.82 -0.22 7.00 16 39 H 0.09 1.79 6.38 -52.48 -0.33 1.46 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 42 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 43 H 0.13 3.91 5.74 -52.49 -0.30 3.61 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -33.24 369.57 -9.40 -42.64 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.86 Total: 11.28 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -4.85 Total: -14.83 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.27 Total: -33.97 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.50 Total: -24.58 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.24 -9.40 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342329525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.854 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds