Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47604 * 2 1 4 4 C 1.35899 * 117.00328 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.05276 * 359.97438 * 4 3 2 6 6 C 1.38127 * 119.93924 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05567 * 359.72376 * 6 5 4 8 8 C 1.38245 * 120.11462 * 0.55406 * 7 6 5 9 9 C 1.50695 * 119.97272 * 179.72788 * 8 7 6 10 10 H 1.08999 * 115.55804 * 205.42773 * 9 8 7 11 11 C 1.53002 * 117.50044 * 351.10936 * 9 8 7 12 12 C 1.53000 * 60.02940 * 107.50594 * 11 9 8 13 13 H 1.08999 * 117.49942 * 252.47315 * 12 11 9 14 14 N 1.46502 * 117.49632 * 107.47827 * 12 11 9 15 15 S 1.65602 * 119.99953 * 146.39315 * 14 12 11 16 16 O 1.42102 * 104.27967 * 181.07267 * 15 14 12 17 17 O 1.42105 * 104.27577 * 308.92429 * 15 14 12 18 18 C 1.81401 * 104.45032 * 64.99928 * 15 14 12 19 19 C 1.52998 * 109.46762 * 180.02562 * 18 15 14 20 20 C 1.50701 * 109.46997 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99681 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00437 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99487 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00358 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47130 * 90.00230 * 24 22 20 26 26 H 1.48497 * 109.47152 * 210.00262 * 24 22 20 27 27 H 1.48505 * 109.46883 * 329.99997 * 24 22 20 28 28 C 1.38167 * 120.05297 * 359.44652 * 8 7 6 29 29 H 1.09008 * 109.46958 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47665 * 59.99604 * 1 2 3 31 31 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46958 * 240.00354 * 2 1 3 33 33 H 1.08998 * 109.47417 * 120.00798 * 2 1 3 34 34 H 1.07995 * 120.03084 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96877 * 179.97438 * 6 5 4 36 36 H 1.08009 * 119.94330 * 180.29660 * 7 6 5 37 37 H 1.09002 * 117.49918 * 0.02562 * 11 9 8 38 38 H 1.09002 * 117.49754 * 215.00777 * 11 9 8 39 39 H 0.97001 * 120.00416 * 326.38858 * 14 12 11 40 40 H 1.08997 * 109.46887 * 300.00086 * 18 15 14 41 41 H 1.08996 * 109.46922 * 60.00251 * 18 15 14 42 42 H 1.08997 * 109.47177 * 299.99525 * 19 18 15 43 43 H 1.08996 * 109.47511 * 60.00228 * 19 18 15 44 44 H 0.97008 * 120.00041 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.02918 * 180.30112 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1998 0.4256 -0.0005 6 6 5.5688 0.6093 -0.0005 7 6 6.0961 1.8876 -0.0063 8 6 5.2552 2.9849 -0.0006 9 6 5.8333 4.3765 -0.0007 10 1 5.1955 5.1507 0.4258 11 6 7.3435 4.5142 0.2024 12 6 6.7314 4.7691 -1.1764 13 1 6.9045 4.0210 -1.9500 14 7 6.6677 6.1567 -1.6422 15 16 6.8365 6.4976 -3.2540 16 8 6.7476 7.9141 -3.3237 17 8 8.0259 5.8187 -3.6331 18 6 5.3893 5.7299 -4.0330 19 6 5.4312 5.9775 -5.5422 20 6 4.2286 5.3403 -6.1894 21 1 3.5069 4.8112 -5.5847 22 6 4.0497 5.4326 -7.5533 23 7 4.9288 6.0765 -8.2896 24 14 2.5594 4.6421 -8.3556 25 1 1.4411 5.6185 -8.3930 26 1 2.9030 4.2298 -9.7401 27 1 2.1494 3.4496 -7.5713 28 6 3.8851 2.8066 -0.0006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7885 -0.5729 -0.0005 35 1 6.2280 -0.2463 -0.0001 36 1 7.1669 2.0291 -0.0112 37 1 7.9190 3.5981 0.3357 38 1 7.6991 5.3788 0.7628 39 1 6.5267 6.8757 -1.0066 40 1 5.3996 4.6570 -3.8407 41 1 4.4800 6.1646 -3.6182 42 1 5.4211 7.0503 -5.7348 43 1 6.3405 5.5424 -5.9568 44 1 4.8028 6.1419 -9.2493 45 1 3.2285 3.6639 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342991558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = -73.283659 kcal Electronic energy + Delta-G solvation = -26672.245687 eV Core-core repulsion = 22782.618204 eV Total energy + Delta-G solvation = -3889.627484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46187 -38.88289 -36.95104 -36.53629 -35.45137 -33.87586 -32.72428 -32.24849 -31.14487 -30.59574 -29.31548 -25.58357 -24.73632 -23.06855 -22.62609 -22.16987 -21.64905 -20.44516 -19.13004 -18.10174 -17.39658 -16.70903 -16.48029 -16.34495 -16.32193 -15.79253 -15.38288 -15.09289 -14.68233 -14.50612 -14.09608 -13.66145 -13.58795 -13.42656 -12.97160 -12.88440 -12.58597 -12.49348 -12.46965 -12.04814 -11.98722 -11.76196 -11.72068 -11.59252 -11.53747 -11.49234 -11.07282 -11.06064 -10.94837 -10.93049 -10.57283 -10.40300 -10.35869 -9.76723 -9.45972 -9.07374 -8.64459 -8.48658 -8.31829 -6.10899 -4.16083 0.75610 1.10235 1.29759 2.92922 3.04739 3.27292 3.33413 3.36505 3.41142 3.89512 4.20914 4.38649 4.44722 4.57190 4.60229 4.62725 4.64391 4.72287 4.80853 4.84558 4.86139 4.95144 5.01938 5.13046 5.20797 5.24485 5.36738 5.47194 5.56295 5.59563 5.68579 5.72958 5.75128 5.78665 5.89981 6.10660 6.14624 6.27027 6.45063 6.51123 6.59229 7.01032 7.23880 7.31785 7.37724 7.82620 8.19458 8.87435 9.48618 11.00181 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007280 B = 0.003747 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.189301 B = 7470.316179 C =10579.126537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.133 3.867 5 C -0.214 4.214 6 C -0.076 4.076 7 C -0.159 4.159 8 C -0.010 4.010 9 C -0.131 4.131 10 H 0.120 0.880 11 C -0.176 4.176 12 C 0.108 3.892 13 H 0.140 0.860 14 N -1.096 6.096 15 S 2.593 3.407 16 O -0.965 6.965 17 O -0.963 6.963 18 C -0.587 4.587 19 C 0.028 3.972 20 C -0.519 4.519 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.891 5.891 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.144 4.144 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -11.652 21.891 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.088 3.912 5 C -0.233 4.233 6 C -0.094 4.094 7 C -0.178 4.178 8 C -0.010 4.010 9 C -0.152 4.152 10 H 0.138 0.862 11 C -0.215 4.215 12 C -0.001 4.001 13 H 0.157 0.843 14 N -0.849 5.849 15 S 2.690 3.310 16 O -0.956 6.956 17 O -0.953 6.953 18 C -0.720 4.720 19 C -0.011 4.011 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.529 5.529 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.162 4.162 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.247 0.753 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.401 -11.074 21.192 23.952 hybrid contribution -1.457 -0.756 -0.106 1.645 sum -2.858 -11.831 21.086 24.346 Atomic orbital electron populations 1.21782 0.92714 1.02830 1.03692 1.22777 0.95935 0.81985 1.01336 1.86081 1.19057 1.29287 1.88564 1.18925 0.82268 0.94023 0.95973 1.21223 0.94498 0.97933 1.09654 1.20892 0.94264 0.97172 0.97053 1.20997 1.00070 0.91945 1.04739 1.18826 0.92095 0.93203 0.96902 1.21638 0.93665 0.95144 1.04723 0.86177 1.23575 0.94218 1.04093 0.99630 1.21471 1.02151 0.84182 0.92290 0.84261 1.55505 1.89896 1.11789 1.27675 1.05635 0.77814 0.74847 0.72654 1.93561 1.88161 1.29004 1.84848 1.93553 1.44084 1.76282 1.81402 1.30445 1.17328 1.12258 1.12014 1.18967 0.99750 0.98743 0.83646 1.21006 1.07419 1.35129 0.92285 0.92033 1.25055 0.96729 0.95282 0.97366 1.69958 1.35182 1.41579 1.06182 0.86485 0.82591 0.79636 0.78677 1.20455 1.21012 1.19768 1.20209 0.94501 0.95026 1.06487 0.91559 0.91282 0.90405 0.91925 0.92163 0.85690 0.85719 0.85471 0.87380 0.87753 0.75327 0.86260 0.86005 0.94829 0.94800 0.92557 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.15 0.38 -0.63 16 2 C 0.05 0.44 5.46 37.15 0.20 0.65 16 3 O -0.32 -3.65 10.14 -19.42 -0.20 -3.85 16 4 C 0.13 1.56 6.69 -39.22 -0.26 1.30 16 5 C -0.21 -2.16 9.04 -39.43 -0.36 -2.52 16 6 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 7 C -0.16 -1.58 9.29 -39.56 -0.37 -1.95 16 8 C -0.01 -0.11 5.61 -104.65 -0.59 -0.69 16 9 C -0.13 -1.28 5.97 -91.74 -0.55 -1.83 16 10 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.18 -1.56 9.78 -26.73 -0.26 -1.82 16 12 C 0.11 1.23 5.98 -67.89 -0.41 0.83 16 13 H 0.14 1.64 8.10 -51.93 -0.42 1.22 16 14 N -1.10 -13.84 5.93 -4.86 -0.03 -13.87 16 15 S 2.59 45.68 5.44 -107.50 -0.58 45.10 16 16 O -0.97 -19.80 18.08 -57.54 -1.04 -20.84 16 17 O -0.96 -19.79 17.80 -57.54 -1.02 -20.81 16 18 C -0.59 -11.24 6.01 37.16 0.22 -11.02 16 19 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 20 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 21 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 24 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 C -0.14 -1.68 9.68 -39.43 -0.38 -2.07 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 7.66 -51.92 -0.40 0.08 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.13 1.04 6.02 -52.48 -0.32 0.72 16 37 H 0.11 0.82 6.18 -51.93 -0.32 0.50 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.41 4.26 8.92 -34.47 -0.31 3.95 16 40 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -36.14 391.19 -11.26 -47.40 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.68 Total: 3.97 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -3.31 Total: -33.49 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.71 Total: -39.73 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.26 Total: -45.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 45.68 SS G_CDS: -0.58 Total: 45.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.14 -11.26 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.884 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds