Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47604 * 2 1 4 4 C 1.35899 * 117.00328 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.05276 * 359.97438 * 4 3 2 6 6 C 1.38127 * 119.93924 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05567 * 359.72376 * 6 5 4 8 8 C 1.38245 * 120.11462 * 0.55406 * 7 6 5 9 9 C 1.50695 * 119.97272 * 179.72788 * 8 7 6 10 10 H 1.08999 * 115.55804 * 205.42773 * 9 8 7 11 11 C 1.53002 * 117.50044 * 351.10936 * 9 8 7 12 12 C 1.53000 * 60.02940 * 107.50594 * 11 9 8 13 13 H 1.08999 * 117.49942 * 252.47315 * 12 11 9 14 14 N 1.46502 * 117.49632 * 107.47827 * 12 11 9 15 15 S 1.65602 * 119.99953 * 146.39315 * 14 12 11 16 16 O 1.42102 * 104.27967 * 181.07267 * 15 14 12 17 17 O 1.42105 * 104.27577 * 308.92429 * 15 14 12 18 18 C 1.81401 * 104.45032 * 64.99928 * 15 14 12 19 19 C 1.52998 * 109.46762 * 180.02562 * 18 15 14 20 20 C 1.50701 * 109.46997 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99681 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00437 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99487 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00358 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47130 * 90.00230 * 24 22 20 26 26 H 1.48497 * 109.47152 * 210.00262 * 24 22 20 27 27 H 1.48505 * 109.46883 * 329.99997 * 24 22 20 28 28 C 1.38167 * 120.05297 * 359.44652 * 8 7 6 29 29 H 1.09008 * 109.46958 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47665 * 59.99604 * 1 2 3 31 31 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46958 * 240.00354 * 2 1 3 33 33 H 1.08998 * 109.47417 * 120.00798 * 2 1 3 34 34 H 1.07995 * 120.03084 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.96877 * 179.97438 * 6 5 4 36 36 H 1.08009 * 119.94330 * 180.29660 * 7 6 5 37 37 H 1.09002 * 117.49918 * 0.02562 * 11 9 8 38 38 H 1.09002 * 117.49754 * 215.00777 * 11 9 8 39 39 H 0.97001 * 120.00416 * 326.38858 * 14 12 11 40 40 H 1.08997 * 109.46887 * 300.00086 * 18 15 14 41 41 H 1.08996 * 109.46922 * 60.00251 * 18 15 14 42 42 H 1.08997 * 109.47177 * 299.99525 * 19 18 15 43 43 H 1.08996 * 109.47511 * 60.00228 * 19 18 15 44 44 H 0.97008 * 120.00041 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.02918 * 180.30112 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1998 0.4256 -0.0005 6 6 5.5688 0.6093 -0.0005 7 6 6.0961 1.8876 -0.0063 8 6 5.2552 2.9849 -0.0006 9 6 5.8333 4.3765 -0.0007 10 1 5.1955 5.1507 0.4258 11 6 7.3435 4.5142 0.2024 12 6 6.7314 4.7691 -1.1764 13 1 6.9045 4.0210 -1.9500 14 7 6.6677 6.1567 -1.6422 15 16 6.8365 6.4976 -3.2540 16 8 6.7476 7.9141 -3.3237 17 8 8.0259 5.8187 -3.6331 18 6 5.3893 5.7299 -4.0330 19 6 5.4312 5.9775 -5.5422 20 6 4.2286 5.3403 -6.1894 21 1 3.5069 4.8112 -5.5847 22 6 4.0497 5.4326 -7.5533 23 7 4.9288 6.0765 -8.2896 24 14 2.5594 4.6421 -8.3556 25 1 1.4411 5.6185 -8.3930 26 1 2.9030 4.2298 -9.7401 27 1 2.1494 3.4496 -7.5713 28 6 3.8851 2.8066 -0.0006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7885 -0.5729 -0.0005 35 1 6.2280 -0.2463 -0.0001 36 1 7.1669 2.0291 -0.0112 37 1 7.9190 3.5981 0.3357 38 1 7.6991 5.3788 0.7628 39 1 6.5267 6.8757 -1.0066 40 1 5.3996 4.6570 -3.8407 41 1 4.4800 6.1646 -3.6182 42 1 5.4211 7.0503 -5.7348 43 1 6.3405 5.5424 -5.9568 44 1 4.8028 6.1419 -9.2493 45 1 3.2285 3.6639 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342991558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = -97.959808 kcal Electronic energy + Delta-G solvation = -26673.315725 eV Core-core repulsion = 22782.618204 eV Total energy + Delta-G solvation = -3890.697522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21585 -39.67331 -38.17237 -37.68294 -37.02273 -35.89684 -33.69830 -33.12624 -32.87939 -31.36534 -30.07400 -27.59342 -25.42412 -23.76045 -23.61504 -23.36681 -23.01026 -21.19053 -20.44506 -19.24342 -18.76542 -18.17660 -17.69463 -17.10174 -17.02609 -17.00442 -16.70674 -16.53589 -16.25795 -15.64912 -15.14739 -14.79911 -14.49272 -14.35643 -14.31679 -13.77983 -13.69720 -13.56494 -13.36447 -13.33509 -13.20158 -13.12756 -12.94840 -12.92976 -12.82022 -12.73778 -12.53128 -12.28081 -12.24896 -12.13964 -11.75566 -11.71668 -11.63010 -11.35466 -11.13256 -10.65000 -10.24545 -9.49635 -9.09493 -8.26610 -6.40187 -0.70409 0.32466 0.52084 1.39243 1.40949 1.52089 1.77437 2.26697 2.37052 2.60974 2.81330 3.06707 3.10321 3.29331 3.66333 3.81326 3.89286 3.92023 3.96208 4.04784 4.05353 4.11177 4.16087 4.20075 4.25565 4.36951 4.40733 4.54160 4.71965 4.75977 4.91974 4.92307 4.92797 5.07607 5.16549 5.19799 5.23823 5.27980 5.29400 5.39044 5.53372 5.68123 5.68675 5.87258 6.06195 6.09409 6.49930 6.73045 7.29767 8.85641 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007280 B = 0.003747 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.189301 B = 7470.316179 C =10579.126537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.114 3.886 5 C -0.219 4.219 6 C -0.079 4.079 7 C -0.166 4.166 8 C -0.019 4.019 9 C -0.122 4.122 10 H 0.130 0.870 11 C -0.155 4.155 12 C 0.076 3.924 13 H 0.133 0.867 14 N -1.076 6.076 15 S 2.628 3.372 16 O -0.996 6.996 17 O -0.992 6.992 18 C -0.589 4.589 19 C 0.021 3.979 20 C -0.539 4.539 21 H 0.071 0.929 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.971 3.029 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.261 1.261 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.428 0.572 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.268 0.732 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -13.433 23.746 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.253 6.253 4 C 0.069 3.931 5 C -0.238 4.238 6 C -0.097 4.097 7 C -0.184 4.184 8 C -0.019 4.019 9 C -0.143 4.143 10 H 0.148 0.852 11 C -0.194 4.194 12 C -0.033 4.033 13 H 0.151 0.849 14 N -0.834 5.834 15 S 2.724 3.276 16 O -0.986 6.986 17 O -0.982 6.982 18 C -0.720 4.720 19 C -0.018 4.018 20 C -0.578 4.578 21 H 0.090 0.910 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.794 3.206 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.185 1.185 28 C -0.185 4.185 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.264 0.736 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.896 -12.858 23.059 26.469 hybrid contribution -1.289 -0.256 -0.582 1.437 sum -3.185 -13.114 22.477 26.217 Atomic orbital electron populations 1.21816 0.91810 1.04152 1.03025 1.23032 0.96719 0.80839 1.02214 1.86055 1.19217 1.31302 1.88723 1.19169 0.82661 0.94593 0.96691 1.21500 0.94806 0.98393 1.09086 1.21263 0.94414 0.98005 0.96007 1.21301 1.01008 0.91920 1.04137 1.18978 0.91865 0.94014 0.97088 1.21646 0.94523 0.94934 1.03183 0.85212 1.23742 0.93606 1.05336 0.96695 1.21703 1.05216 0.82869 0.93482 0.84905 1.54887 1.89637 1.13269 1.25584 1.04295 0.76479 0.73413 0.73436 1.93512 1.88250 1.30873 1.85949 1.93514 1.45164 1.76729 1.82772 1.30362 1.19727 1.14021 1.07936 1.18814 0.98176 0.96731 0.88055 1.21493 1.08212 1.35094 0.92999 0.91047 1.26067 0.99948 0.95776 0.98190 1.70096 1.37406 1.43124 1.06597 0.85360 0.78585 0.79012 0.77603 1.19551 1.20589 1.18463 1.20381 0.95183 0.95254 1.07665 0.91687 0.92451 0.88076 0.91569 0.90647 0.83891 0.83191 0.83620 0.85735 0.86159 0.73561 0.84544 0.84207 0.97390 0.97288 0.92356 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.70 5.46 71.98 0.39 1.09 16 3 O -0.34 -7.73 10.14 -92.42 -0.94 -8.67 16 4 C 0.11 2.60 6.69 22.51 0.15 2.75 16 5 C -0.22 -4.07 9.04 22.37 0.20 -3.87 16 6 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 7 C -0.17 -2.91 9.29 22.28 0.21 -2.70 16 8 C -0.02 -0.38 5.61 -19.88 -0.11 -0.49 16 9 C -0.12 -2.12 5.97 -11.52 -0.07 -2.19 16 10 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 11 C -0.15 -2.25 9.78 30.60 0.30 -1.95 16 12 C 0.08 1.57 5.98 45.01 0.27 1.84 16 13 H 0.13 2.95 8.10 -2.39 -0.02 2.94 16 14 N -1.08 -25.49 5.93 -169.29 -1.00 -26.49 16 15 S 2.63 92.42 5.44 -56.49 -0.31 92.11 16 16 O -1.00 -41.09 18.08 -127.65 -2.31 -43.39 16 17 O -0.99 -40.93 17.80 -127.65 -2.27 -43.21 16 18 C -0.59 -22.66 6.01 71.98 0.43 -22.22 16 19 C 0.02 1.12 4.98 29.85 0.15 1.27 16 20 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 21 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 22 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 23 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 24 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 28 C -0.17 -3.82 9.68 22.37 0.22 -3.60 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.92 7.66 -2.38 -0.02 0.91 16 33 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 34 H 0.14 2.00 6.30 -2.91 -0.02 1.98 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.15 1.91 6.02 -2.91 -0.02 1.89 16 37 H 0.12 1.42 6.18 -2.39 -0.01 1.41 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.43 7.91 8.92 -96.75 -0.86 7.05 16 40 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 41 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 45 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -79.47 391.19 -0.58 -80.05 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.14 Total: 22.53 kcal Atomic # 6 Polarization: -65.85 SS G_CDS: 3.80 Total: -62.05 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -0.72 Total: -83.34 kcal Atomic # 8 Polarization: -89.75 SS G_CDS: -5.52 Total: -95.27 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 92.42 SS G_CDS: -0.31 Total: 92.11 kcal Total: -79.47 -0.58 -80.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.909 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds