Wall clock time and date at job start Tue Mar 31 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46934 * 2 1 4 4 C 1.35897 * 116.99856 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05640 * 359.97438 * 4 3 2 6 6 C 1.38124 * 119.94661 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.05414 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11339 * 0.04447 * 7 6 5 9 9 C 1.50699 * 119.97682 * 179.70149 * 8 7 6 10 10 H 1.09000 * 115.55071 * 154.41615 * 9 8 7 11 11 C 1.52999 * 117.49620 * 8.74758 * 9 8 7 12 12 C 1.52998 * 117.49745 * 300.08990 * 9 8 7 13 13 H 1.08994 * 117.49830 * 214.97462 * 12 9 8 14 14 N 1.46501 * 117.50077 * 359.97438 * 12 9 8 15 15 S 1.65600 * 120.00309 * 215.00349 * 14 12 9 16 16 O 1.42094 * 104.27988 * 181.07156 * 15 14 12 17 17 O 1.42104 * 104.27455 * 308.92810 * 15 14 12 18 18 C 1.81394 * 104.44827 * 64.99495 * 15 14 12 19 19 C 1.53002 * 109.46927 * 180.02562 * 18 15 14 20 20 C 1.50702 * 109.47090 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00239 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99422 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00235 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47163 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47498 * 120.00214 * 24 22 20 27 27 H 1.48498 * 109.47089 * 240.00203 * 24 22 20 28 28 C 1.38172 * 120.05216 * 359.97438 * 8 7 6 29 29 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47326 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.47299 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47326 * 240.00085 * 2 1 3 33 33 H 1.08994 * 109.47060 * 119.99688 * 2 1 3 34 34 H 1.07998 * 120.02775 * 0.04879 * 5 4 3 35 35 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.94796 * 180.02562 * 7 6 5 37 37 H 1.09004 * 117.49886 * 0.02562 * 11 9 8 38 38 H 1.09006 * 117.50031 * 144.99644 * 11 9 8 39 39 H 0.97003 * 119.99894 * 34.99860 * 14 12 9 40 40 H 1.08996 * 109.47722 * 300.00348 * 18 15 14 41 41 H 1.09000 * 109.47304 * 60.00674 * 18 15 14 42 42 H 1.09005 * 109.47293 * 300.00028 * 19 18 15 43 43 H 1.08992 * 109.47425 * 60.00603 * 19 18 15 44 44 H 0.97006 * 119.99943 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02512 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 0.0027 7 6 6.0962 1.8878 0.0022 8 6 5.2552 2.9850 0.0015 9 6 5.8331 4.3768 0.0078 10 1 5.1961 5.1523 -0.4175 11 6 7.3437 4.5153 -0.1917 12 6 6.7273 4.7650 1.1869 13 1 6.6789 5.7961 1.5371 14 7 6.9557 3.7556 2.2238 15 16 7.1045 4.2147 3.8080 16 8 7.3379 2.9986 4.5049 17 8 8.0832 5.2447 3.7839 18 6 5.4776 4.8924 4.2374 19 6 5.4876 5.3576 5.6950 20 6 4.1358 5.9201 6.0520 21 1 3.3483 5.9431 5.3133 22 6 3.9042 6.4045 7.3220 23 7 4.8631 6.3760 8.2215 24 14 2.2285 7.1010 7.7647 25 1 1.3310 7.0197 6.5843 26 1 1.6468 6.3179 8.8842 27 1 2.3755 8.5200 8.1772 28 6 3.8850 2.8066 0.0008 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5727 0.0012 35 1 6.2280 -0.2460 0.0031 36 1 7.1668 2.0294 0.0026 37 1 7.9194 3.5997 -0.3280 38 1 7.7005 5.3819 -0.7483 39 1 7.0198 2.8183 1.9825 40 1 5.2534 5.7385 3.5879 41 1 4.7172 4.1225 4.1067 42 1 5.7119 4.5117 6.3449 43 1 6.2478 6.1277 5.8254 44 1 4.7003 6.7171 9.1149 45 1 3.2284 3.6641 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342991559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:18 Heat of formation + Delta-G solvation = -72.020399 kcal Electronic energy + Delta-G solvation = -27066.481925 eV Core-core repulsion = 23176.909221 eV Total energy + Delta-G solvation = -3889.572705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51581 -38.97827 -36.85007 -36.49407 -35.43277 -33.87312 -32.43925 -32.26418 -31.14157 -30.70095 -29.49813 -25.58133 -24.74072 -23.14383 -22.73611 -21.96639 -21.64545 -20.39878 -19.09818 -18.04787 -17.58292 -16.55979 -16.40423 -16.35007 -16.11636 -15.94933 -15.37442 -15.11663 -14.65704 -14.49312 -14.06989 -13.73149 -13.58995 -13.45599 -13.23920 -12.91515 -12.64602 -12.48002 -12.37626 -11.97263 -11.80308 -11.73074 -11.71420 -11.58843 -11.55913 -11.49387 -11.08064 -11.03477 -10.94050 -10.93139 -10.56755 -10.37565 -10.36482 -9.75422 -9.40430 -9.04573 -8.65095 -8.49118 -8.33879 -6.11041 -4.16180 0.78483 1.10697 1.27950 2.93495 3.07049 3.26442 3.33759 3.37468 3.41059 3.90121 4.24329 4.38716 4.39780 4.56786 4.60366 4.62900 4.67718 4.75584 4.80648 4.85048 4.87871 4.95324 5.02938 5.11604 5.20965 5.24396 5.36587 5.47219 5.56099 5.62391 5.69092 5.72223 5.73827 5.79462 5.90327 6.11779 6.14488 6.25854 6.44400 6.51623 6.58482 7.04554 7.23237 7.32092 7.37952 7.82617 8.19439 8.87573 9.48524 11.00085 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.003605 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.232830 B = 7764.358696 C =10051.362249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.136 3.864 5 C -0.216 4.216 6 C -0.073 4.073 7 C -0.169 4.169 8 C -0.002 4.002 9 C -0.135 4.135 10 H 0.124 0.876 11 C -0.178 4.178 12 C 0.109 3.891 13 H 0.144 0.856 14 N -1.096 6.096 15 S 2.592 3.408 16 O -0.966 6.966 17 O -0.964 6.964 18 C -0.587 4.587 19 C 0.027 3.973 20 C -0.518 4.518 21 H 0.062 0.938 22 C 0.057 3.943 23 N -0.891 5.891 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -11.201 -22.018 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.090 3.910 5 C -0.235 4.235 6 C -0.092 4.092 7 C -0.187 4.187 8 C -0.002 4.002 9 C -0.155 4.155 10 H 0.142 0.858 11 C -0.217 4.217 12 C 0.000 4.000 13 H 0.162 0.838 14 N -0.850 5.850 15 S 2.690 3.310 16 O -0.956 6.956 17 O -0.954 6.954 18 C -0.720 4.720 19 C -0.012 4.012 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.164 4.164 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.443 -10.950 -21.246 23.946 hybrid contribution -1.498 -0.238 -0.020 1.516 sum -2.941 -11.188 -21.266 24.209 Atomic orbital electron populations 1.21782 0.92692 1.02839 1.03690 1.22784 0.95949 0.81967 1.01361 1.86083 1.19036 1.29307 1.88517 1.18934 0.82272 0.94030 0.95736 1.21217 0.94455 0.97973 1.09821 1.20903 0.94334 0.97142 0.96774 1.20994 0.99952 0.92116 1.05640 1.18777 0.92046 0.93301 0.96085 1.21669 0.93742 0.95383 1.04744 0.85790 1.23556 0.94189 1.04312 0.99621 1.21425 1.01750 0.92821 0.84037 0.83823 1.55524 1.89376 1.15683 1.24419 1.05621 0.78664 0.74719 0.71999 1.93555 1.85760 1.45131 1.71179 1.93552 1.57001 1.59795 1.85040 1.30442 1.19209 1.11609 1.10773 1.18974 1.00000 0.97558 0.84624 1.21046 0.96640 1.40948 0.97135 0.91965 1.25066 0.97307 0.95770 0.96359 1.69967 1.32374 1.46050 1.04496 0.86422 0.83671 0.78747 0.78510 1.19629 1.20824 1.20800 1.20204 0.94470 0.95030 1.06732 0.90397 0.91279 0.91558 0.92161 0.91894 0.85649 0.85686 0.85655 0.87910 0.87288 0.75240 0.86217 0.86053 0.94882 0.94797 0.92613 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.64 10.14 -19.42 -0.20 -3.84 16 4 C 0.14 1.59 6.69 -39.22 -0.26 1.33 16 5 C -0.22 -2.22 9.04 -39.43 -0.36 -2.58 16 6 C -0.07 -0.72 10.04 -39.60 -0.40 -1.12 16 7 C -0.17 -1.72 7.54 -39.56 -0.30 -2.02 16 8 C 0.00 -0.02 5.23 -104.64 -0.55 -0.57 16 9 C -0.13 -1.29 6.04 -91.77 -0.55 -1.84 16 10 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.18 -1.55 9.79 -26.69 -0.26 -1.82 16 12 C 0.11 1.22 6.30 -67.89 -0.43 0.79 16 13 H 0.14 1.49 8.10 -51.93 -0.42 1.07 16 14 N -1.10 -14.75 5.56 -4.86 -0.03 -14.78 16 15 S 2.59 46.79 5.44 -107.50 -0.58 46.21 16 16 O -0.97 -20.40 18.08 -57.54 -1.04 -21.44 16 17 O -0.96 -19.87 17.80 -57.54 -1.02 -20.90 16 18 C -0.59 -11.33 6.01 37.16 0.22 -11.10 16 19 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 20 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 21 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.15 -1.71 9.68 -39.43 -0.38 -2.09 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 33 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.10 5.69 -52.49 -0.30 0.80 16 37 H 0.10 0.85 6.17 -51.93 -0.32 0.53 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.41 5.09 6.46 -34.47 -0.22 4.87 16 40 H 0.12 2.03 8.14 -51.93 -0.42 1.60 16 41 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -36.10 386.28 -11.14 -47.25 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.58 Total: 4.84 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: -3.23 Total: -33.61 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.71 Total: -40.64 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.26 Total: -46.18 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.58 Total: 46.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.10 -11.14 -47.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.772 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds