Wall clock time and date at job start Tue Mar 31 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46934 * 2 1 4 4 C 1.35897 * 116.99856 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05640 * 359.97438 * 4 3 2 6 6 C 1.38124 * 119.94661 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.05414 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.11339 * 0.04447 * 7 6 5 9 9 C 1.50699 * 119.97682 * 179.70149 * 8 7 6 10 10 H 1.09000 * 115.55071 * 154.41615 * 9 8 7 11 11 C 1.52999 * 117.49620 * 8.74758 * 9 8 7 12 12 C 1.52998 * 117.49745 * 300.08990 * 9 8 7 13 13 H 1.08994 * 117.49830 * 214.97462 * 12 9 8 14 14 N 1.46501 * 117.50077 * 359.97438 * 12 9 8 15 15 S 1.65600 * 120.00309 * 215.00349 * 14 12 9 16 16 O 1.42094 * 104.27988 * 181.07156 * 15 14 12 17 17 O 1.42104 * 104.27455 * 308.92810 * 15 14 12 18 18 C 1.81394 * 104.44827 * 64.99495 * 15 14 12 19 19 C 1.53002 * 109.46927 * 180.02562 * 18 15 14 20 20 C 1.50702 * 109.47090 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00239 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99422 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00235 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47163 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47498 * 120.00214 * 24 22 20 27 27 H 1.48498 * 109.47089 * 240.00203 * 24 22 20 28 28 C 1.38172 * 120.05216 * 359.97438 * 8 7 6 29 29 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47326 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.47299 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47326 * 240.00085 * 2 1 3 33 33 H 1.08994 * 109.47060 * 119.99688 * 2 1 3 34 34 H 1.07998 * 120.02775 * 0.04879 * 5 4 3 35 35 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.94796 * 180.02562 * 7 6 5 37 37 H 1.09004 * 117.49886 * 0.02562 * 11 9 8 38 38 H 1.09006 * 117.50031 * 144.99644 * 11 9 8 39 39 H 0.97003 * 119.99894 * 34.99860 * 14 12 9 40 40 H 1.08996 * 109.47722 * 300.00348 * 18 15 14 41 41 H 1.09000 * 109.47304 * 60.00674 * 18 15 14 42 42 H 1.09005 * 109.47293 * 300.00028 * 19 18 15 43 43 H 1.08992 * 109.47425 * 60.00603 * 19 18 15 44 44 H 0.97006 * 119.99943 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02512 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 0.0027 7 6 6.0962 1.8878 0.0022 8 6 5.2552 2.9850 0.0015 9 6 5.8331 4.3768 0.0078 10 1 5.1961 5.1523 -0.4175 11 6 7.3437 4.5153 -0.1917 12 6 6.7273 4.7650 1.1869 13 1 6.6789 5.7961 1.5371 14 7 6.9557 3.7556 2.2238 15 16 7.1045 4.2147 3.8080 16 8 7.3379 2.9986 4.5049 17 8 8.0832 5.2447 3.7839 18 6 5.4776 4.8924 4.2374 19 6 5.4876 5.3576 5.6950 20 6 4.1358 5.9201 6.0520 21 1 3.3483 5.9431 5.3133 22 6 3.9042 6.4045 7.3220 23 7 4.8631 6.3760 8.2215 24 14 2.2285 7.1010 7.7647 25 1 1.3310 7.0197 6.5843 26 1 1.6468 6.3179 8.8842 27 1 2.3755 8.5200 8.1772 28 6 3.8850 2.8066 0.0008 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7886 -0.5727 0.0012 35 1 6.2280 -0.2460 0.0031 36 1 7.1668 2.0294 0.0026 37 1 7.9194 3.5997 -0.3280 38 1 7.7005 5.3819 -0.7483 39 1 7.0198 2.8183 1.9825 40 1 5.2534 5.7385 3.5879 41 1 4.7172 4.1225 4.1067 42 1 5.7119 4.5117 6.3449 43 1 6.2478 6.1277 5.8254 44 1 4.7003 6.7171 9.1149 45 1 3.2284 3.6641 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342991559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:18 Heat of formation + Delta-G solvation = -96.438485 kcal Electronic energy + Delta-G solvation = -27067.540773 eV Core-core repulsion = 23176.909221 eV Total energy + Delta-G solvation = -3890.631552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28225 -39.76816 -38.18146 -37.55096 -37.02656 -35.89444 -33.46490 -33.12513 -32.89392 -31.48294 -30.25140 -27.59136 -25.43143 -23.90802 -23.55884 -23.44955 -22.81983 -21.15163 -20.43706 -19.18849 -18.84019 -18.35680 -17.33356 -17.05671 -17.03622 -17.00156 -16.79948 -16.51855 -16.33269 -15.61962 -15.15212 -14.80315 -14.49926 -14.45336 -14.30233 -14.10020 -13.73350 -13.44547 -13.41668 -13.23034 -13.21438 -13.12921 -12.95722 -12.91032 -12.78579 -12.70990 -12.49806 -12.28078 -12.23328 -12.10919 -11.73806 -11.72273 -11.63796 -11.32903 -11.12253 -10.65354 -10.18095 -9.51111 -9.12834 -8.26133 -6.39720 -0.70107 0.32292 0.48205 1.40540 1.40938 1.54416 1.78151 2.25225 2.37807 2.61204 2.79389 3.07347 3.13250 3.27908 3.65546 3.85823 3.88441 3.93538 3.96549 4.04209 4.09045 4.12018 4.15788 4.18739 4.24629 4.35909 4.38899 4.54628 4.70912 4.75889 4.91435 4.92490 4.97696 5.04605 5.16735 5.19392 5.26278 5.27801 5.30719 5.37175 5.50043 5.66863 5.68783 5.84714 6.01411 6.06988 6.48152 6.73853 7.30312 8.86372 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.003605 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.232830 B = 7764.358696 C =10051.362249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.117 3.883 5 C -0.222 4.222 6 C -0.078 4.078 7 C -0.177 4.177 8 C -0.010 4.010 9 C -0.127 4.127 10 H 0.140 0.860 11 C -0.159 4.159 12 C 0.075 3.925 13 H 0.150 0.850 14 N -1.080 6.080 15 S 2.624 3.376 16 O -0.999 6.999 17 O -0.989 6.989 18 C -0.587 4.587 19 C 0.021 3.979 20 C -0.537 4.537 21 H 0.074 0.926 22 C -0.003 4.003 23 N -0.933 5.933 24 Si 0.973 3.027 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.276 1.276 28 C -0.166 4.166 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.420 0.580 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.005 0.995 43 H 0.010 0.990 44 H 0.267 0.733 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -11.586 -24.125 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.072 3.928 5 C -0.240 4.240 6 C -0.096 4.096 7 C -0.195 4.195 8 C -0.011 4.011 9 C -0.148 4.148 10 H 0.158 0.842 11 C -0.198 4.198 12 C -0.033 4.033 13 H 0.168 0.832 14 N -0.838 5.838 15 S 2.721 3.279 16 O -0.990 6.990 17 O -0.979 6.979 18 C -0.719 4.719 19 C -0.018 4.018 20 C -0.576 4.576 21 H 0.092 0.908 22 C -0.201 4.201 23 N -0.573 5.573 24 Si 0.796 3.204 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.202 1.202 28 C -0.185 4.185 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.257 0.743 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.023 0.977 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.260 -11.339 -23.367 26.071 hybrid contribution -1.226 -0.188 0.538 1.352 sum -3.486 -11.527 -22.829 25.811 Atomic orbital electron populations 1.21814 0.91731 1.04153 1.03068 1.23037 0.96775 0.80841 1.02190 1.86058 1.19140 1.31272 1.88639 1.19182 0.82664 0.94602 0.96329 1.21483 0.94712 0.98487 1.09353 1.21258 0.94537 0.97938 0.95860 1.21259 1.00710 0.92202 1.05366 1.18957 0.91837 0.94189 0.96094 1.21734 0.94621 0.95175 1.03242 0.84185 1.23712 0.93605 1.05509 0.96926 1.21795 1.04660 0.92472 0.84383 0.83212 1.54985 1.89198 1.16682 1.22979 1.04375 0.77467 0.73435 0.72646 1.93501 1.85995 1.46342 1.73140 1.93515 1.57639 1.60802 1.85959 1.30347 1.21305 1.13153 1.07066 1.18826 0.98759 0.95882 0.88354 1.21530 0.97699 1.40714 0.97684 0.90831 1.26091 1.01556 0.96114 0.96357 1.70106 1.34880 1.47268 1.05060 0.85282 0.78587 0.77944 0.78559 1.18115 1.20413 1.20161 1.20386 0.95112 0.95271 1.07730 0.88109 0.92403 0.91635 0.90685 0.91611 0.83914 0.83379 0.84211 0.87185 0.85014 0.74257 0.83709 0.84739 0.97711 0.97127 0.92382 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.70 5.46 71.98 0.39 1.09 16 3 O -0.34 -7.66 10.14 -92.39 -0.94 -8.59 16 4 C 0.12 2.68 6.69 22.51 0.15 2.83 16 5 C -0.22 -4.24 9.04 22.37 0.20 -4.04 16 6 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 7 C -0.18 -3.25 7.54 22.28 0.17 -3.08 16 8 C -0.01 -0.21 5.23 -19.88 -0.10 -0.31 16 9 C -0.13 -2.12 6.04 -11.54 -0.07 -2.19 16 10 H 0.14 1.86 8.14 -2.39 -0.02 1.85 16 11 C -0.16 -2.27 9.79 30.62 0.30 -1.97 16 12 C 0.07 1.51 6.30 45.01 0.28 1.79 16 13 H 0.15 2.81 8.10 -2.39 -0.02 2.79 16 14 N -1.08 -27.51 5.56 -169.30 -0.94 -28.45 16 15 S 2.62 94.54 5.44 -56.49 -0.31 94.23 16 16 O -1.00 -42.69 18.08 -127.65 -2.31 -45.00 16 17 O -0.99 -40.82 17.80 -127.65 -2.27 -43.09 16 18 C -0.59 -22.62 6.01 71.98 0.43 -22.19 16 19 C 0.02 1.09 4.98 29.85 0.15 1.24 16 20 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 22 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 23 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 24 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 C -0.17 -3.78 9.68 22.37 0.22 -3.56 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 33 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 34 H 0.14 2.08 6.30 -2.91 -0.02 2.06 16 35 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.14 2.06 5.69 -2.91 -0.02 2.05 16 37 H 0.11 1.44 6.17 -2.38 -0.01 1.43 16 38 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.42 9.66 6.46 -96.74 -0.62 9.03 16 40 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 41 H 0.13 4.79 8.14 -2.39 -0.02 4.77 16 42 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 45 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -79.13 386.28 -0.30 -79.43 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.38 Total: 24.76 kcal Atomic # 6 Polarization: -66.00 SS G_CDS: 3.78 Total: -62.22 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -0.66 Total: -85.27 kcal Atomic # 8 Polarization: -91.17 SS G_CDS: -5.52 Total: -96.68 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 94.54 SS G_CDS: -0.31 Total: 94.23 kcal Total: -79.13 -0.30 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.010 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds