Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.47274 * 2 1 4 4 C 1.35896 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05426 * 0.29963 * 4 3 2 6 6 C 1.38119 * 119.94413 * 180.21111 * 5 4 3 7 7 C 1.38288 * 120.05366 * 359.50981 * 6 5 4 8 8 C 1.38240 * 120.11591 * 0.24016 * 7 6 5 9 9 C 1.50696 * 119.97662 * 180.02562 * 8 7 6 10 10 H 1.09001 * 115.55107 * 154.27697 * 9 8 7 11 11 C 1.53001 * 117.49974 * 8.60504 * 9 8 7 12 12 C 1.53005 * 60.00080 * 252.51061 * 11 9 8 13 13 H 1.08998 * 117.49583 * 107.48644 * 12 11 9 14 14 N 1.46500 * 117.49764 * 252.50958 * 12 11 9 15 15 S 1.65603 * 119.99740 * 213.61853 * 14 12 11 16 16 O 1.42096 * 104.27582 * 181.06973 * 15 14 12 17 17 O 1.42103 * 104.27799 * 308.93275 * 15 14 12 18 18 C 1.81403 * 104.44643 * 65.00018 * 15 14 12 19 19 C 1.52997 * 109.47014 * 179.97438 * 18 15 14 20 20 C 1.50697 * 109.47149 * 180.02562 * 19 18 15 21 21 H 1.08002 * 120.00359 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99879 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00007 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00177 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47204 * 89.99562 * 24 22 20 26 26 H 1.48502 * 109.47111 * 209.99859 * 24 22 20 27 27 H 1.48502 * 109.47102 * 329.99568 * 24 22 20 28 28 C 1.38171 * 120.05202 * 359.97438 * 8 7 6 29 29 H 1.08995 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46703 * 299.99919 * 1 2 3 31 31 H 1.08998 * 109.47110 * 59.99057 * 1 2 3 32 32 H 1.09000 * 109.46703 * 240.00081 * 2 1 3 33 33 H 1.09000 * 109.46727 * 120.00280 * 2 1 3 34 34 H 1.07998 * 120.02597 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.97592 * 179.79533 * 6 5 4 36 36 H 1.08006 * 119.94478 * 180.25913 * 7 6 5 37 37 H 1.09000 * 117.49599 * 0.02562 * 11 9 8 38 38 H 1.08997 * 117.50170 * 144.99844 * 11 9 8 39 39 H 0.96997 * 119.99655 * 33.62330 * 14 12 11 40 40 H 1.08996 * 109.47321 * 299.99716 * 18 15 14 41 41 H 1.08999 * 109.46885 * 59.99957 * 18 15 14 42 42 H 1.09006 * 109.47305 * 300.00445 * 19 18 15 43 43 H 1.08998 * 109.47251 * 59.99734 * 19 18 15 44 44 H 0.96996 * 120.00091 * 180.02562 * 23 22 20 45 45 H 1.07997 * 120.02764 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0073 6 6 5.5689 0.6093 -0.0035 7 6 6.0962 1.8876 -0.0031 8 6 5.2553 2.9849 -0.0015 9 6 5.8334 4.3765 -0.0017 10 1 5.1950 5.1507 -0.4273 11 6 7.3433 4.5143 -0.2066 12 6 6.7322 4.7683 1.1729 13 1 6.9054 4.0194 1.9457 14 7 6.6690 6.1555 1.6398 15 16 6.8392 6.4952 3.2516 16 8 6.6995 7.9072 3.3288 17 8 5.9106 5.6309 3.8919 18 6 8.5409 6.0017 3.6409 19 6 8.8240 6.2702 5.1203 20 6 10.2378 5.8608 5.4435 21 1 10.8713 5.4505 4.6710 22 6 10.7230 6.0109 6.7254 23 7 11.9570 5.6541 7.0074 24 14 9.6276 6.7212 8.0615 25 1 8.8917 5.6212 8.7350 26 1 10.4634 7.4398 9.0567 27 1 8.6570 7.6673 7.4549 28 6 3.8852 2.8065 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7886 -0.5728 -0.0118 35 1 6.2281 -0.2463 -0.0054 36 1 7.1670 2.0291 -0.0043 37 1 7.9185 3.5984 -0.3417 38 1 7.6983 5.3791 -0.7671 39 1 6.5274 6.8749 1.0047 40 1 8.6675 4.9391 3.4334 41 1 9.2351 6.5768 3.0282 42 1 8.6974 7.3328 5.3274 43 1 8.1297 5.6954 5.7332 44 1 12.2982 5.7594 7.9092 45 1 3.2286 3.6640 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342991561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = -68.988160 kcal Electronic energy + Delta-G solvation = -26314.235593 eV Core-core repulsion = 22424.794376 eV Total energy + Delta-G solvation = -3889.441217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51366 -38.93810 -37.01476 -36.66623 -35.58992 -33.95793 -32.80168 -32.31709 -31.49017 -30.64670 -29.36585 -25.98188 -24.79382 -23.11856 -22.68445 -22.20769 -21.34392 -20.47758 -19.21980 -18.19146 -17.59262 -16.88711 -16.70402 -16.41848 -16.40865 -15.87056 -15.50449 -15.20519 -14.74368 -14.30827 -14.14451 -13.73641 -13.68106 -13.62036 -13.04903 -12.96108 -12.81882 -12.59000 -12.51938 -12.13523 -12.06077 -11.89437 -11.82724 -11.73660 -11.65866 -11.54904 -11.26139 -11.19962 -11.13687 -10.98485 -10.62884 -10.44228 -10.14929 -9.74321 -9.48208 -9.26923 -8.69463 -8.66618 -8.36569 -6.16975 -4.18225 0.60853 1.07182 1.25390 2.85019 2.93262 3.26645 3.33999 3.36210 3.38264 3.83436 4.12870 4.33708 4.35641 4.50786 4.52593 4.55581 4.63847 4.65350 4.72790 4.78820 4.80917 4.89063 4.93861 5.08798 5.13708 5.15198 5.31569 5.38688 5.50341 5.52418 5.54160 5.59773 5.64732 5.74711 5.86015 6.04052 6.09286 6.23463 6.27434 6.41385 6.54777 6.81149 6.89572 6.96814 7.17866 7.54269 8.35979 8.84132 9.42698 10.95316 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.002345 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.175310 B =11938.526918 C =12144.999422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.131 3.869 5 C -0.214 4.214 6 C -0.075 4.075 7 C -0.159 4.159 8 C -0.008 4.008 9 C -0.127 4.127 10 H 0.119 0.881 11 C -0.179 4.179 12 C 0.107 3.893 13 H 0.140 0.860 14 N -1.095 6.095 15 S 2.590 3.410 16 O -0.965 6.965 17 O -0.961 6.961 18 C -0.580 4.580 19 C -0.008 4.008 20 C -0.519 4.519 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.895 5.895 24 Si 0.869 3.131 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.262 1.262 28 C -0.144 4.144 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.415 0.585 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.266 0.734 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 -10.641 -19.434 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.086 3.914 5 C -0.233 4.233 6 C -0.093 4.093 7 C -0.177 4.177 8 C -0.009 4.009 9 C -0.148 4.148 10 H 0.137 0.863 11 C -0.218 4.218 12 C -0.002 4.002 13 H 0.158 0.842 14 N -0.847 5.847 15 S 2.687 3.313 16 O -0.955 6.955 17 O -0.951 6.951 18 C -0.714 4.714 19 C -0.047 4.047 20 C -0.558 4.558 21 H 0.096 0.904 22 C -0.132 4.132 23 N -0.533 5.533 24 Si 0.695 3.305 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.186 1.186 28 C -0.162 4.162 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.656 -10.251 -18.587 27.610 hybrid contribution 0.181 0.069 0.209 0.284 sum -17.475 -10.182 -18.379 27.328 Atomic orbital electron populations 1.21780 0.92735 1.02842 1.03618 1.22778 0.95889 0.82011 1.01382 1.86071 1.19110 1.29268 1.88659 1.18914 0.82217 0.94021 0.96212 1.21218 0.94503 0.97890 1.09713 1.20907 0.94272 0.97217 0.96930 1.21015 1.00147 0.91925 1.04578 1.18833 0.92120 0.93236 0.96710 1.21555 0.93700 0.95103 1.04419 0.86291 1.23664 0.94238 1.04323 0.99585 1.21472 1.02532 0.84057 0.92176 0.84226 1.55421 1.89097 1.11814 1.28397 1.05685 0.78856 0.74350 0.72396 1.93568 1.87125 1.30139 1.84688 1.93573 1.59719 1.68162 1.73658 1.30298 1.20012 1.11747 1.09303 1.19421 1.00394 0.97965 0.86940 1.20841 0.95027 1.43249 0.96671 0.90379 1.24991 0.94995 0.94670 0.98502 1.69878 1.15140 1.47428 1.20877 0.86925 0.81147 0.80257 0.82122 1.19668 1.20768 1.18614 1.20191 0.94521 0.94958 1.06568 0.90378 0.91401 0.91538 0.92107 0.91958 0.85680 0.85624 0.85358 0.87197 0.87553 0.75199 0.85663 0.85368 0.94909 0.95330 0.92383 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.38 10.14 -19.41 -0.20 -3.57 16 4 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 5 C -0.21 -2.05 9.04 -39.43 -0.36 -2.41 16 6 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 7 C -0.16 -1.54 9.30 -39.56 -0.37 -1.91 16 8 C -0.01 -0.09 5.61 -104.65 -0.59 -0.68 16 9 C -0.13 -1.23 5.97 -91.77 -0.55 -1.78 16 10 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.18 -1.48 9.78 -26.73 -0.26 -1.74 16 12 C 0.11 1.16 5.98 -67.93 -0.41 0.76 16 13 H 0.14 1.57 8.11 -51.93 -0.42 1.14 16 14 N -1.09 -13.07 5.93 -4.89 -0.03 -13.10 16 15 S 2.59 42.89 5.44 -107.50 -0.58 42.31 16 16 O -0.96 -18.63 18.08 -57.54 -1.04 -19.67 16 17 O -0.96 -18.83 17.82 -57.54 -1.03 -19.86 16 18 C -0.58 -10.31 6.01 37.16 0.22 -10.09 16 19 C -0.01 -0.18 4.05 -27.89 -0.11 -0.30 16 20 C -0.52 -14.35 9.66 -34.44 -0.33 -14.69 16 21 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 22 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 24 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 28 C -0.14 -1.64 9.68 -39.43 -0.38 -2.02 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.06 0.40 7.68 -51.93 -0.40 0.01 16 34 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.02 6.01 -52.48 -0.32 0.70 16 37 H 0.11 0.78 6.17 -51.93 -0.32 0.46 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 4.00 8.92 -34.48 -0.31 3.69 16 40 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 41 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 43 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -36.06 387.60 -10.88 -46.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.65 Total: 3.12 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: -3.30 Total: -32.65 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.74 Total: -39.24 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -2.26 Total: -43.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 42.89 SS G_CDS: -0.58 Total: 42.31 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.06 -10.88 -46.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.044 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds