Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.47274 * 2 1 4 4 C 1.35896 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05426 * 0.29963 * 4 3 2 6 6 C 1.38119 * 119.94413 * 180.21111 * 5 4 3 7 7 C 1.38288 * 120.05366 * 359.50981 * 6 5 4 8 8 C 1.38240 * 120.11591 * 0.24016 * 7 6 5 9 9 C 1.50696 * 119.97662 * 180.02562 * 8 7 6 10 10 H 1.09001 * 115.55107 * 154.27697 * 9 8 7 11 11 C 1.53001 * 117.49974 * 8.60504 * 9 8 7 12 12 C 1.53005 * 60.00080 * 252.51061 * 11 9 8 13 13 H 1.08998 * 117.49583 * 107.48644 * 12 11 9 14 14 N 1.46500 * 117.49764 * 252.50958 * 12 11 9 15 15 S 1.65603 * 119.99740 * 213.61853 * 14 12 11 16 16 O 1.42096 * 104.27582 * 181.06973 * 15 14 12 17 17 O 1.42103 * 104.27799 * 308.93275 * 15 14 12 18 18 C 1.81403 * 104.44643 * 65.00018 * 15 14 12 19 19 C 1.52997 * 109.47014 * 179.97438 * 18 15 14 20 20 C 1.50697 * 109.47149 * 180.02562 * 19 18 15 21 21 H 1.08002 * 120.00359 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99879 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00007 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00177 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47204 * 89.99562 * 24 22 20 26 26 H 1.48502 * 109.47111 * 209.99859 * 24 22 20 27 27 H 1.48502 * 109.47102 * 329.99568 * 24 22 20 28 28 C 1.38171 * 120.05202 * 359.97438 * 8 7 6 29 29 H 1.08995 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46703 * 299.99919 * 1 2 3 31 31 H 1.08998 * 109.47110 * 59.99057 * 1 2 3 32 32 H 1.09000 * 109.46703 * 240.00081 * 2 1 3 33 33 H 1.09000 * 109.46727 * 120.00280 * 2 1 3 34 34 H 1.07998 * 120.02597 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.97592 * 179.79533 * 6 5 4 36 36 H 1.08006 * 119.94478 * 180.25913 * 7 6 5 37 37 H 1.09000 * 117.49599 * 0.02562 * 11 9 8 38 38 H 1.08997 * 117.50170 * 144.99844 * 11 9 8 39 39 H 0.96997 * 119.99655 * 33.62330 * 14 12 11 40 40 H 1.08996 * 109.47321 * 299.99716 * 18 15 14 41 41 H 1.08999 * 109.46885 * 59.99957 * 18 15 14 42 42 H 1.09006 * 109.47305 * 300.00445 * 19 18 15 43 43 H 1.08998 * 109.47251 * 59.99734 * 19 18 15 44 44 H 0.96996 * 120.00091 * 180.02562 * 23 22 20 45 45 H 1.07997 * 120.02764 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0073 6 6 5.5689 0.6093 -0.0035 7 6 6.0962 1.8876 -0.0031 8 6 5.2553 2.9849 -0.0015 9 6 5.8334 4.3765 -0.0017 10 1 5.1950 5.1507 -0.4273 11 6 7.3433 4.5143 -0.2066 12 6 6.7322 4.7683 1.1729 13 1 6.9054 4.0194 1.9457 14 7 6.6690 6.1555 1.6398 15 16 6.8392 6.4952 3.2516 16 8 6.6995 7.9072 3.3288 17 8 5.9106 5.6309 3.8919 18 6 8.5409 6.0017 3.6409 19 6 8.8240 6.2702 5.1203 20 6 10.2378 5.8608 5.4435 21 1 10.8713 5.4505 4.6710 22 6 10.7230 6.0109 6.7254 23 7 11.9570 5.6541 7.0074 24 14 9.6276 6.7212 8.0615 25 1 8.8917 5.6212 8.7350 26 1 10.4634 7.4398 9.0567 27 1 8.6570 7.6673 7.4549 28 6 3.8852 2.8065 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7886 -0.5728 -0.0118 35 1 6.2281 -0.2463 -0.0054 36 1 7.1670 2.0291 -0.0043 37 1 7.9185 3.5984 -0.3417 38 1 7.6983 5.3791 -0.7671 39 1 6.5274 6.8749 1.0047 40 1 8.6675 4.9391 3.4334 41 1 9.2351 6.5768 3.0282 42 1 8.6974 7.3328 5.3274 43 1 8.1297 5.6954 5.7332 44 1 12.2982 5.7594 7.9092 45 1 3.2286 3.6640 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342991561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = -93.988349 kcal Electronic energy + Delta-G solvation = -26315.319683 eV Core-core repulsion = 22424.794376 eV Total energy + Delta-G solvation = -3890.525306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22919 -39.68201 -38.18878 -37.69576 -37.04564 -35.87894 -33.71218 -33.45685 -32.88748 -31.37380 -30.08637 -27.86913 -25.43316 -23.77441 -23.39820 -23.17929 -23.01022 -21.19019 -20.46452 -19.44306 -18.92961 -18.29440 -17.70507 -17.11508 -17.03667 -17.00495 -16.73425 -16.39701 -16.24913 -15.66702 -15.24684 -14.81645 -14.80840 -14.37232 -14.32797 -13.81928 -13.74058 -13.53843 -13.38914 -13.35017 -13.20732 -13.14069 -13.06145 -13.00759 -12.91433 -12.75837 -12.54564 -12.27166 -12.22196 -11.93823 -11.75963 -11.68230 -11.64595 -11.38255 -11.18566 -10.83131 -10.27191 -9.50796 -9.10772 -8.35260 -6.40410 -0.73625 0.32076 0.50410 1.32601 1.34717 1.44470 1.73187 2.25055 2.30376 2.60743 2.75396 2.98765 3.13717 3.24642 3.65780 3.81229 3.85652 3.89310 3.96177 4.02008 4.04549 4.08807 4.15081 4.18942 4.22663 4.36388 4.39561 4.52362 4.59350 4.71329 4.91710 4.92505 4.92959 5.06600 5.09223 5.11794 5.15926 5.19373 5.26597 5.37279 5.48896 5.52450 5.67395 5.85811 6.07785 6.18415 6.48278 6.65776 7.23739 8.80059 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.002345 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.175310 B =11938.526918 C =12144.999422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.115 3.885 5 C -0.218 4.218 6 C -0.079 4.079 7 C -0.166 4.166 8 C -0.020 4.020 9 C -0.127 4.127 10 H 0.125 0.875 11 C -0.154 4.154 12 C 0.077 3.923 13 H 0.135 0.865 14 N -1.077 6.077 15 S 2.623 3.377 16 O -0.992 6.992 17 O -0.992 6.992 18 C -0.584 4.584 19 C -0.019 4.019 20 C -0.524 4.524 21 H 0.052 0.948 22 C 0.013 3.987 23 N -0.939 5.939 24 Si 0.923 3.077 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.250 1.250 28 C -0.168 4.168 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.428 0.572 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.269 0.731 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -11.323 -20.652 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.070 3.930 5 C -0.237 4.237 6 C -0.097 4.097 7 C -0.184 4.184 8 C -0.020 4.020 9 C -0.147 4.147 10 H 0.143 0.857 11 C -0.193 4.193 12 C -0.032 4.032 13 H 0.152 0.848 14 N -0.835 5.835 15 S 2.720 3.280 16 O -0.982 6.982 17 O -0.981 6.981 18 C -0.716 4.716 19 C -0.058 4.058 20 C -0.563 4.563 21 H 0.070 0.930 22 C -0.186 4.186 23 N -0.579 5.579 24 Si 0.746 3.254 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.174 1.174 28 C -0.187 4.187 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.265 0.735 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.450 -10.930 -19.816 29.198 hybrid contribution 0.415 0.181 0.454 0.641 sum -18.035 -10.749 -19.362 28.560 Atomic orbital electron populations 1.21814 0.91682 1.04183 1.03054 1.23050 0.96790 0.80780 1.02257 1.86049 1.19089 1.31378 1.88737 1.19136 0.82721 0.94469 0.96715 1.21497 0.94722 0.98411 1.09073 1.21277 0.94511 0.97974 0.95933 1.21309 1.01045 0.91914 1.04146 1.19009 0.91979 0.94090 0.96944 1.21595 0.94837 0.94862 1.03448 0.85668 1.23805 0.93184 1.05546 0.96717 1.21693 1.05196 0.82958 0.93314 0.84773 1.54866 1.88708 1.13078 1.26805 1.04420 0.77543 0.72994 0.73080 1.93525 1.87189 1.31791 1.85715 1.93536 1.60377 1.68857 1.75362 1.30275 1.21977 1.13430 1.05922 1.19391 0.97812 0.97754 0.90869 1.21171 0.96842 1.42254 0.96055 0.92979 1.25864 0.96295 0.95328 1.01111 1.70002 1.16974 1.49258 1.21656 0.86047 0.79728 0.80096 0.79491 1.18641 1.19997 1.17360 1.20364 0.95173 0.95266 1.07895 0.88057 0.92262 0.91785 0.90788 0.91411 0.83728 0.83179 0.83554 0.85648 0.85825 0.73540 0.83964 0.83776 0.94985 0.95117 0.92176 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.61 5.46 71.98 0.39 1.00 16 3 O -0.34 -7.20 10.14 -92.38 -0.94 -8.14 16 4 C 0.11 2.52 6.69 22.51 0.15 2.67 16 5 C -0.22 -3.88 9.04 22.37 0.20 -3.68 16 6 C -0.08 -1.29 10.04 22.25 0.22 -1.07 16 7 C -0.17 -2.91 9.30 22.28 0.21 -2.70 16 8 C -0.02 -0.40 5.61 -19.88 -0.11 -0.51 16 9 C -0.13 -2.23 5.97 -11.54 -0.07 -2.29 16 10 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 11 C -0.15 -2.07 9.78 30.60 0.30 -1.77 16 12 C 0.08 1.52 5.98 44.99 0.27 1.79 16 13 H 0.13 2.81 8.11 -2.39 -0.02 2.79 16 14 N -1.08 -23.65 5.93 -169.38 -1.00 -24.66 16 15 S 2.62 83.55 5.44 -56.49 -0.31 83.25 16 16 O -0.99 -37.07 18.08 -127.65 -2.31 -39.38 16 17 O -0.99 -38.04 17.82 -127.65 -2.27 -40.32 16 18 C -0.58 -20.04 6.01 71.98 0.43 -19.61 16 19 C -0.02 -0.88 4.05 29.85 0.12 -0.76 16 20 C -0.52 -29.21 9.66 25.60 0.25 -28.96 16 21 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 22 C 0.01 0.72 5.47 84.66 0.46 1.19 16 23 N -0.94 -57.36 13.96 21.45 0.30 -57.06 16 24 Si 0.92 43.79 27.47 68.60 1.88 45.67 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 28 C -0.17 -3.84 9.68 22.37 0.22 -3.63 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.76 7.65 -2.39 -0.02 0.75 16 33 H 0.07 0.80 7.68 -2.39 -0.02 0.79 16 34 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 35 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.15 1.91 6.01 -2.91 -0.02 1.89 16 37 H 0.13 1.32 6.17 -2.39 -0.01 1.31 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.43 7.27 8.92 -96.74 -0.86 6.41 16 40 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 41 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 42 H 0.03 1.47 7.20 -2.38 -0.02 1.46 16 43 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -78.31 387.60 -0.78 -79.09 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.08 Total: 20.65 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 3.78 Total: -59.11 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -0.70 Total: -81.72 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -5.52 Total: -87.84 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: 83.55 SS G_CDS: -0.31 Total: 83.25 kcal Total: -78.31 -0.78 -79.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342991561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.898 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds