Wall clock time and date at job start Tue Mar 31 2020 22:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47234 * 2 1 4 4 C 1.46502 * 119.99609 * 270.00054 * 3 2 1 5 5 C 1.50701 * 109.47210 * 269.99837 * 4 3 2 6 6 H 1.08003 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00293 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99479 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47100 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46961 * 120.00052 * 9 7 5 12 12 H 1.48503 * 109.46871 * 240.00024 * 9 7 5 13 13 C 1.34774 * 120.00073 * 90.00194 * 3 2 1 14 14 O 1.21284 * 119.99852 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99787 * 359.97438 * 13 3 2 16 16 C 1.53009 * 109.46825 * 180.02562 * 15 13 3 17 17 S 1.81392 * 109.46898 * 179.97438 * 16 15 13 18 18 O 1.42100 * 110.54362 * 68.37669 * 17 16 15 19 19 O 1.42105 * 110.54626 * 291.62580 * 17 16 15 20 20 C 1.76195 * 104.45127 * 180.02562 * 17 16 15 21 21 C 1.38233 * 120.00186 * 89.99428 * 20 17 16 22 22 C 1.38234 * 120.00037 * 179.72636 * 21 20 17 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08996 * 109.46736 * 300.00441 * 1 2 3 28 28 H 1.08998 * 109.46689 * 60.00076 * 1 2 3 29 29 H 1.08991 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46804 * 240.00075 * 2 1 3 31 31 H 1.09004 * 109.47262 * 120.00326 * 2 1 3 32 32 H 1.08996 * 109.47640 * 29.99888 * 4 3 2 33 33 H 1.09002 * 109.47060 * 150.00350 * 4 3 2 34 34 H 0.97006 * 119.99618 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47144 * 60.00228 * 15 13 3 36 36 H 1.08996 * 109.47250 * 300.00171 * 15 13 3 37 37 H 1.08994 * 109.46837 * 60.00018 * 16 15 13 38 38 H 1.08997 * 109.46749 * 299.99868 * 16 15 13 39 39 H 1.08002 * 120.00157 * 0.02562 * 21 20 17 40 40 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 41 41 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 42 42 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 43 43 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 44 44 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 45 45 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3427 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8776 8 7 3.3497 3.1271 -3.6172 9 14 5.9134 2.0961 -3.4172 10 1 6.6008 1.2402 -2.4171 11 1 5.9204 1.4180 -4.7382 12 1 6.6216 3.3970 -3.5248 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4723 16 6 2.3224 2.2439 3.6352 17 16 2.0187 1.3893 5.2061 18 8 2.9598 0.3412 5.3937 19 8 0.6276 1.1666 5.3919 20 6 2.4368 2.5755 6.4400 21 6 1.4722 3.4399 6.9229 22 6 1.7990 4.3668 7.8950 23 6 3.0916 4.4329 8.3804 24 6 3.4479 5.4437 9.4398 25 6 4.0576 3.5724 7.8933 26 6 3.7308 2.6453 6.9214 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6757 3.5176 -4.4432 35 1 2.6212 0.4186 2.5302 36 1 0.9433 1.0125 2.5298 37 1 1.6922 3.1313 3.5771 38 1 3.3703 2.5380 3.5778 39 1 0.4621 3.3879 6.5441 40 1 1.0443 5.0390 8.2756 41 1 3.2942 5.0058 10.4261 42 1 4.4931 5.7327 9.3294 43 1 2.8142 6.3237 9.3301 44 1 5.0677 3.6243 8.2722 45 1 4.4855 1.9728 6.5411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343890899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:49 Heat of formation + Delta-G solvation = -114.306082 kcal Electronic energy + Delta-G solvation = -26857.094583 eV Core-core repulsion = 22965.688233 eV Total energy + Delta-G solvation = -3891.406349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80978 -40.29840 -38.21643 -37.07465 -37.03850 -35.03888 -34.09837 -33.99629 -32.04262 -31.58423 -29.33742 -28.26546 -26.47096 -24.60356 -23.87596 -23.78302 -22.79276 -20.08747 -20.00812 -18.96310 -18.60664 -18.11710 -17.41216 -17.19029 -16.75143 -16.60099 -16.34466 -16.16933 -15.90764 -15.37015 -15.03094 -14.78952 -14.71661 -14.52386 -14.51153 -14.11795 -13.70204 -13.54543 -13.27375 -13.24449 -13.22911 -13.13399 -13.10417 -13.08172 -13.03009 -12.70275 -12.60053 -12.45489 -12.17705 -12.10667 -11.99985 -11.84566 -11.68986 -11.61012 -10.67600 -10.65471 -10.07113 -10.05271 -9.47111 -8.23322 -6.37847 -1.03189 -0.19780 0.30314 1.36341 1.38203 1.50261 1.75995 1.83183 2.24271 2.37635 2.46265 2.86615 3.06527 3.11178 3.33188 3.69569 3.71006 3.83261 3.85791 3.94643 4.08426 4.28735 4.34483 4.34766 4.42421 4.49795 4.66263 4.66817 4.69449 4.78911 4.81185 4.97518 4.99400 5.00412 5.06158 5.08347 5.08783 5.22095 5.23788 5.40249 5.47828 5.57163 5.83533 5.87831 6.05523 6.68299 6.76550 7.26319 7.42866 8.84038 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.002664 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.070891 B =10508.888638 C =11532.473846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.504 3.496 14 O -0.589 6.589 15 C -0.137 4.137 16 C -0.584 4.584 17 S 2.526 3.474 18 O -0.960 6.960 19 O -0.957 6.957 20 C -0.676 4.676 21 C -0.035 4.035 22 C -0.151 4.151 23 C -0.037 4.037 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.037 4.037 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.023 0.977 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.154 0.846 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -1.670 25.296 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.333 5.333 4 C 0.139 3.861 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.471 6.471 15 C -0.178 4.178 16 C -0.714 4.714 17 S 2.709 3.291 18 O -0.957 6.957 19 O -0.954 6.954 20 C -0.765 4.765 21 C -0.054 4.054 22 C -0.169 4.169 23 C -0.037 4.037 24 C -0.179 4.179 25 C -0.170 4.170 26 C -0.056 4.056 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.041 0.959 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.172 0.828 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.482 -1.848 25.262 25.568 hybrid contribution 1.086 1.034 -0.987 1.795 sum -2.396 -0.813 24.275 24.406 Atomic orbital electron populations 1.22207 0.94503 1.03783 1.01957 1.21859 0.95477 0.81327 1.04374 1.48291 1.63589 1.15176 1.06274 1.18748 0.95388 0.91635 0.80345 1.21748 0.97853 1.31872 1.06552 0.92733 1.25863 1.02394 0.94503 0.96463 1.70061 1.37705 1.34248 1.14843 0.85364 0.79022 0.78000 0.78407 1.19039 1.19505 1.20773 1.20807 0.77408 0.86502 0.86087 1.90637 1.48088 1.20352 1.87977 1.21603 1.06887 0.99288 0.90029 1.30100 1.13951 1.12568 1.14759 1.04408 0.73781 0.74873 0.76066 1.93530 1.64206 1.52742 1.85262 1.93528 1.32159 1.84491 1.85261 1.30338 1.02896 1.21000 1.22259 1.21252 0.98775 0.91216 0.94171 1.21548 0.97307 1.00012 0.98067 1.20722 0.93259 0.94799 0.94912 1.21015 1.03560 0.96873 0.96415 1.21540 1.01170 0.96216 0.98098 1.21240 0.94174 0.95918 0.94246 0.91869 0.94037 0.88474 0.90577 0.87879 0.95860 0.98297 0.92421 0.85259 0.84914 0.83385 0.83772 0.83122 0.82648 0.89169 0.89991 0.89882 0.82814 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 10.24 71.98 0.74 -3.35 16 2 C 0.09 2.75 5.93 86.38 0.51 3.27 16 3 N -0.60 -25.17 2.46 -826.14 -2.03 -27.20 16 4 C 0.26 13.98 5.16 85.63 0.44 14.42 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 9 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.50 20.30 7.67 87.66 0.67 20.97 16 14 O -0.59 -29.34 15.56 -3.04 -0.05 -29.39 16 15 C -0.14 -3.67 4.26 29.85 0.13 -3.54 16 16 C -0.58 -13.81 5.27 71.99 0.38 -13.43 16 17 S 2.53 56.31 5.16 -56.49 -0.29 56.02 16 18 O -0.96 -25.81 17.14 -127.65 -2.19 -28.00 16 19 O -0.96 -24.90 17.12 -127.65 -2.19 -27.09 16 20 C -0.68 -14.22 5.66 22.27 0.13 -14.09 16 21 C -0.04 -0.67 9.47 22.27 0.21 -0.46 16 22 C -0.15 -2.34 9.70 22.27 0.22 -2.12 16 23 C -0.04 -0.53 5.88 -19.86 -0.12 -0.65 16 24 C -0.12 -0.96 10.01 71.24 0.71 -0.25 16 25 C -0.15 -2.42 9.70 22.27 0.22 -2.21 16 26 C -0.04 -0.72 9.47 22.27 0.21 -0.51 16 27 H 0.06 1.41 7.22 -2.39 -0.02 1.40 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 32 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 34 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 35 H 0.13 2.81 7.40 -2.39 -0.02 2.80 16 36 H 0.13 2.74 7.18 -2.39 -0.02 2.73 16 37 H 0.15 3.32 8.10 -2.39 -0.02 3.30 16 38 H 0.14 3.41 8.10 -2.39 -0.02 3.39 16 39 H 0.15 2.45 7.57 -2.91 -0.02 2.43 16 40 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 43 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.15 2.58 7.58 -2.91 -0.02 2.56 16 Total: -1.00 -83.56 390.84 1.70 -81.87 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.98 Total: 14.77 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 5.15 Total: -31.98 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.74 Total: -83.08 kcal Atomic # 8 Polarization: -80.05 SS G_CDS: -4.42 Total: -84.47 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 56.31 SS G_CDS: -0.29 Total: 56.02 kcal Total: -83.56 1.70 -81.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343890899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.439 kcal (2) G-P(sol) polarization free energy of solvation -83.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds