Wall clock time and date at job start Tue Mar 31 2020 23:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00680 * 2 1 4 4 C 1.38739 * 120.04859 * 359.97438 * 3 2 1 5 5 C 1.38148 * 119.93836 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05673 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.94144 * 179.97438 * 6 5 4 8 8 N 1.46490 * 115.54993 * 312.21963 * 7 6 5 9 9 S 1.65598 * 119.99985 * 204.41504 * 8 7 6 10 10 O 1.42101 * 104.27811 * 184.38200 * 9 8 7 11 11 O 1.42100 * 104.27868 * 312.23351 * 9 8 7 12 12 C 1.81392 * 104.45189 * 68.30936 * 9 8 7 13 13 C 1.52999 * 109.47470 * 189.94750 * 12 9 8 14 14 C 1.53000 * 109.47626 * 179.75087 * 13 12 9 15 15 C 1.50697 * 109.47261 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99964 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99766 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00428 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47434 * 89.99822 * 19 17 15 21 21 H 1.48501 * 109.47102 * 210.00108 * 19 17 15 22 22 H 1.48506 * 109.47030 * 329.99394 * 19 17 15 23 23 C 1.53001 * 117.49433 * 166.50978 * 7 6 5 24 24 C 1.52998 * 60.00012 * 252.51388 * 23 7 6 25 25 C 1.38264 * 120.11290 * 0.02562 * 6 5 4 26 26 C 1.38137 * 120.05901 * 359.97351 * 25 6 5 27 27 H 1.09003 * 109.46757 * 59.99960 * 1 2 3 28 28 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47225 * 300.00745 * 1 2 3 30 30 H 1.07995 * 120.03035 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.96790 * 180.28001 * 5 4 3 32 32 H 0.97009 * 120.00401 * 24.41116 * 8 7 6 33 33 H 1.09007 * 109.46980 * 309.94440 * 12 9 8 34 34 H 1.08999 * 109.47274 * 69.94819 * 12 9 8 35 35 H 1.09007 * 109.46979 * 299.74984 * 13 12 9 36 36 H 1.09004 * 109.47342 * 59.74597 * 13 12 9 37 37 H 1.09006 * 109.46362 * 299.97473 * 14 13 12 38 38 H 1.08996 * 109.47121 * 59.97439 * 14 13 12 39 39 H 0.96997 * 120.00533 * 180.02562 * 18 17 15 40 40 H 1.08998 * 117.49989 * 0.02562 * 23 7 6 41 41 H 1.09005 * 117.49108 * 145.02057 * 23 7 6 42 42 H 1.09004 * 117.49672 * 252.51295 * 24 23 7 43 43 H 1.08998 * 117.49583 * 107.49476 * 24 23 7 44 44 H 1.08007 * 119.97061 * 179.97438 * 25 6 5 45 45 H 1.07995 * 120.03272 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0005 5 6 1.9213 3.6047 0.0000 6 6 3.3021 3.6756 0.0005 7 6 3.9863 5.0184 0.0005 8 7 3.4823 5.9844 -0.9786 9 16 4.4606 7.2090 -1.5129 10 8 3.6196 7.9889 -2.3518 11 8 5.0197 7.7542 -0.3258 12 6 5.7381 6.3731 -2.4926 13 6 6.8473 7.3681 -2.8397 14 6 7.9278 6.6616 -3.6608 15 6 9.0200 7.6418 -4.0031 16 1 8.9502 8.6664 -3.6689 17 6 10.1083 7.2306 -4.7430 18 7 10.1935 5.9828 -5.1496 19 14 11.4618 8.4459 -5.1680 20 1 12.4946 8.4297 -4.1011 21 1 12.0813 8.0641 -6.4625 22 1 10.8854 9.8101 -5.2785 23 6 5.4828 5.0487 0.3177 24 6 4.4725 5.5635 1.3450 25 6 4.0562 2.5167 0.0000 26 6 3.4315 1.2847 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2131 2.3202 -0.0005 31 1 1.3344 4.5114 0.0042 32 1 2.5754 5.9067 -1.3141 33 1 6.1571 5.5487 -1.9156 34 1 5.2966 5.9863 -3.4111 35 1 6.4291 8.1903 -3.4205 36 1 7.2859 7.7583 -1.9212 37 1 8.3462 5.8397 -3.0797 38 1 7.4892 6.2711 -4.5790 39 1 10.9593 5.6934 -5.6698 40 1 5.9725 4.0974 0.5260 41 1 6.0926 5.7874 -0.2024 42 1 4.4178 6.6409 1.5007 43 1 4.2975 4.9509 2.2294 44 1 5.1347 2.5748 0.0000 45 1 4.0209 0.3798 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345120906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:08 Heat of formation + Delta-G solvation = -84.849847 kcal Electronic energy + Delta-G solvation = -27026.142123 eV Core-core repulsion = 23136.013092 eV Total energy + Delta-G solvation = -3890.129031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31678 -39.94393 -38.31202 -37.42697 -37.03896 -36.49194 -34.19879 -33.27344 -31.99746 -30.88073 -29.70976 -28.19348 -25.73193 -24.26199 -24.05199 -22.97444 -22.34180 -21.41045 -20.27038 -19.39854 -18.78351 -18.62791 -17.92299 -17.19451 -16.96727 -16.76539 -16.62464 -16.48041 -15.84010 -15.81188 -15.59257 -14.84890 -14.65671 -14.49120 -14.31214 -14.11034 -13.82945 -13.69375 -13.52274 -13.27262 -13.21025 -13.06655 -12.97015 -12.82016 -12.71578 -12.66769 -12.44659 -12.24974 -12.09029 -11.89341 -11.75163 -11.73745 -11.46628 -11.36381 -11.07444 -10.57154 -10.17090 -9.97267 -9.05568 -8.22265 -6.33215 -0.83148 0.33284 0.38146 1.40438 1.41101 1.52370 1.62191 2.38485 2.39856 2.52540 2.71319 2.87710 3.11193 3.13112 3.40341 3.52746 3.75640 3.79662 3.88907 3.95216 4.01446 4.28623 4.31818 4.37593 4.41520 4.45040 4.55734 4.62016 4.64101 4.69709 4.76949 4.90327 4.96599 5.03497 5.06258 5.07548 5.22530 5.30082 5.36760 5.45830 5.61018 5.62889 5.76401 5.79776 6.01187 6.19783 6.44387 6.82409 7.36046 8.89191 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.002567 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.243868 B =10906.653365 C =11966.072311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.206 4.206 5 C -0.069 4.069 6 C -0.094 4.094 7 C 0.155 3.845 8 N -1.075 6.075 9 S 2.627 3.373 10 O -0.990 6.990 11 O -0.973 6.973 12 C -0.619 4.619 13 C -0.103 4.103 14 C 0.032 3.968 15 C -0.551 4.551 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.217 4.217 24 C -0.169 4.169 25 C -0.072 4.072 26 C -0.160 4.160 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.428 0.572 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.005 0.995 38 H 0.000 1.000 39 H 0.265 0.735 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.147 0.853 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.122 -11.547 13.928 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.225 4.225 5 C -0.088 4.088 6 C -0.096 4.096 7 C 0.066 3.934 8 N -0.832 5.832 9 S 2.723 3.277 10 O -0.981 6.981 11 O -0.962 6.962 12 C -0.749 4.749 13 C -0.142 4.142 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.254 4.254 24 C -0.209 4.209 25 C -0.091 4.091 26 C -0.179 4.179 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.265 0.735 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.140 0.860 44 H 0.164 0.836 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.943 -10.886 14.073 27.481 hybrid contribution 0.597 -0.025 -0.991 1.158 sum -20.346 -10.911 13.082 26.535 Atomic orbital electron populations 1.23341 0.76475 1.05533 1.02305 1.86057 1.23460 1.26938 1.88548 1.19301 0.92712 0.84768 0.96054 1.21432 1.01219 0.91529 1.08307 1.20933 0.93473 0.98091 0.96265 1.18764 0.93680 0.91209 1.05967 1.18728 0.94535 0.88121 0.92055 1.54887 1.27055 1.46235 1.55043 1.04417 0.74970 0.73859 0.74480 1.93540 1.66001 1.67955 1.70570 1.93546 1.80182 1.76981 1.45533 1.30772 1.14887 1.12910 1.16364 1.21301 0.95033 0.96640 1.01249 1.18953 0.92412 0.95168 0.94115 1.21727 1.05925 0.97284 1.33960 0.92128 1.25931 1.00879 0.97145 0.95618 1.70070 1.31249 1.17603 1.38028 0.85487 0.78882 0.79197 0.77760 1.19624 1.20625 1.18948 1.24063 0.91096 1.05541 1.04743 1.23820 1.00683 1.02963 0.93400 1.21070 1.01063 0.90452 0.96499 1.20605 0.91821 0.98958 1.06504 0.91792 0.86526 0.91520 0.83149 0.84090 0.73506 0.83259 0.84001 0.91892 0.90954 0.97619 0.98144 0.92643 0.84439 0.88768 0.87627 0.86045 0.83575 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.57 10.50 -92.43 -0.97 -6.54 16 3 C 0.12 2.04 6.69 22.51 0.15 2.19 16 4 C -0.21 -3.03 9.04 22.37 0.20 -2.83 16 5 C -0.07 -1.08 9.30 22.25 0.21 -0.88 16 6 C -0.09 -1.69 5.46 -19.85 -0.11 -1.80 16 7 C 0.16 3.14 3.02 2.86 0.01 3.14 16 8 N -1.08 -23.09 5.89 -155.19 -0.91 -24.00 16 9 S 2.63 75.84 4.95 -56.49 -0.28 75.56 16 10 O -0.99 -34.27 18.08 -127.65 -2.31 -36.57 16 11 O -0.97 -32.00 14.21 -127.65 -1.81 -33.81 16 12 C -0.62 -19.09 5.56 71.98 0.40 -18.69 16 13 C -0.10 -4.18 5.16 30.59 0.16 -4.02 16 14 C 0.03 1.64 4.97 29.85 0.15 1.79 16 15 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 19 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.22 -4.62 7.86 30.59 0.24 -4.38 16 24 C -0.17 -3.48 9.56 30.59 0.29 -3.19 16 25 C -0.07 -1.26 9.34 22.25 0.21 -1.06 16 26 C -0.16 -2.84 9.99 22.36 0.22 -2.62 16 27 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 30 H 0.15 1.45 6.30 -2.91 -0.02 1.43 16 31 H 0.14 1.71 7.75 -2.91 -0.02 1.69 16 32 H 0.43 7.35 8.18 -96.74 -0.79 6.56 16 33 H 0.15 4.11 5.61 -2.39 -0.01 4.10 16 34 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 35 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.14 2.27 6.31 -2.39 -0.02 2.26 16 41 H 0.09 2.36 4.30 -2.38 -0.01 2.35 16 42 H 0.11 2.57 6.58 -2.39 -0.02 2.56 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 44 H 0.15 2.15 6.15 -2.91 -0.02 2.13 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -75.05 375.70 0.19 -74.86 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.23 Total: 21.28 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 3.94 Total: -61.52 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -0.63 Total: -79.46 kcal Atomic # 8 Polarization: -71.83 SS G_CDS: -5.09 Total: -76.93 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 75.84 SS G_CDS: -0.28 Total: 75.56 kcal Total: -75.05 0.19 -74.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345120906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.990 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds