Wall clock time and date at job start Tue Mar 31 2020 23:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99615 * 2 1 4 4 C 1.50705 * 109.46878 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.00251 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.99460 * 0.02774 * 6 5 4 8 8 C 1.38208 * 120.00367 * 359.70171 * 7 6 5 9 9 C 1.38205 * 119.99683 * 179.97438 * 4 3 2 10 10 C 1.50695 * 120.00291 * 0.02562 * 9 4 3 11 11 N 1.46502 * 109.47037 * 80.00057 * 10 9 4 12 12 S 1.65601 * 119.99922 * 165.00037 * 11 10 9 13 13 O 1.42105 * 104.27788 * 181.06825 * 12 11 10 14 14 O 1.42102 * 104.27843 * 308.92790 * 12 11 10 15 15 C 1.81396 * 104.44938 * 64.99727 * 12 11 10 16 16 C 1.53001 * 109.47170 * 173.80890 * 15 12 11 17 17 C 1.50700 * 115.54526 * 65.19917 * 16 15 12 18 18 H 1.08003 * 119.99882 * 264.77814 * 17 16 15 19 19 C 1.37877 * 120.00296 * 84.78556 * 17 16 15 20 20 N 1.31512 * 120.00071 * 352.22982 * 19 17 16 21 21 Si 1.86807 * 119.99866 * 172.23159 * 19 17 16 22 22 H 1.48494 * 109.47049 * 90.00185 * 21 19 17 23 23 H 1.48500 * 109.46712 * 209.99581 * 21 19 17 24 24 H 1.48492 * 109.47130 * 329.99518 * 21 19 17 25 25 C 1.52995 * 117.50530 * 279.52745 * 16 15 12 26 26 C 1.52997 * 117.50378 * 210.86299 * 16 15 12 27 27 H 1.09000 * 109.47185 * 299.99743 * 1 2 3 28 28 H 1.09002 * 109.47430 * 60.00197 * 1 2 3 29 29 H 1.09004 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46960 * 60.00268 * 3 2 1 31 31 H 1.09000 * 109.46882 * 300.00010 * 3 2 1 32 32 H 1.08004 * 120.00130 * 0.02562 * 5 4 3 33 33 H 1.07995 * 120.00038 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.99602 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.00560 * 180.30080 * 8 7 6 36 36 H 1.08996 * 109.46991 * 319.99632 * 10 9 4 37 37 H 1.09009 * 109.47195 * 199.99717 * 10 9 4 38 38 H 0.97002 * 119.99898 * 345.27261 * 11 10 9 39 39 H 1.09004 * 109.47464 * 293.81162 * 15 12 11 40 40 H 1.08999 * 109.47260 * 53.81267 * 15 12 11 41 41 H 0.96996 * 120.00394 * 185.03529 * 20 19 17 42 42 H 1.08999 * 117.49486 * 359.97438 * 25 16 15 43 43 H 1.08999 * 117.50180 * 145.01663 * 25 16 15 44 44 H 1.08998 * 117.50418 * 214.98380 * 26 16 15 45 45 H 1.09005 * 117.49846 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1071 -0.0615 0.0006 6 6 5.4850 -0.1707 0.0006 7 6 6.2685 0.9683 0.0013 8 6 5.6742 2.2161 -0.0043 9 6 4.2958 2.3252 0.0002 10 6 3.6477 3.6857 -0.0003 11 7 3.2211 4.0239 1.3598 12 16 2.8207 5.5857 1.7377 13 8 2.4897 5.5383 3.1189 14 8 3.9241 6.3522 1.2747 15 6 1.3446 5.9284 0.7408 16 6 0.7820 7.3005 1.1175 17 6 1.6673 8.4767 0.7952 18 1 2.3223 8.8828 1.5518 19 6 1.6410 9.0344 -0.4655 20 7 0.9620 8.4507 -1.4287 21 14 2.5699 10.6191 -0.8053 22 1 3.9510 10.2984 -1.2467 23 1 1.8737 11.3817 -1.8725 24 1 2.6232 11.4369 0.4330 25 6 -0.0788 7.3890 2.3792 26 6 -0.7301 7.5010 0.9985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.4950 -0.9514 -0.0004 33 1 5.9494 -1.1457 0.0010 34 1 7.3452 0.8831 0.0018 35 1 6.2862 3.1058 -0.0086 36 1 2.7808 3.6749 -0.6609 37 1 4.3633 4.4290 -0.3520 38 1 3.1771 3.3337 2.0400 39 1 1.6105 5.9225 -0.3163 40 1 0.5923 5.1628 0.9304 41 1 1.0024 8.8016 -2.3321 42 1 -0.2447 6.4697 2.9408 43 1 -0.0050 8.2981 2.9761 44 1 -1.0847 8.4837 0.6876 45 1 -1.3242 6.6556 0.6515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346429576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:02 Heat of formation + Delta-G solvation = -71.003822 kcal Electronic energy + Delta-G solvation = -27852.262523 eV Core-core repulsion = 23962.733901 eV Total energy + Delta-G solvation = -3889.528622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91099 -37.73308 -36.78755 -36.29132 -35.35390 -35.02500 -32.06834 -32.04174 -30.97666 -28.20598 -27.54782 -25.82139 -25.48021 -25.34736 -22.00456 -21.24428 -20.98784 -19.76573 -18.69965 -17.30666 -16.81138 -16.71564 -16.42041 -16.10050 -15.85935 -15.22236 -15.04765 -14.87239 -14.72200 -14.45321 -14.24864 -13.81936 -13.51350 -13.20123 -13.15084 -12.84895 -12.71246 -12.25426 -11.97913 -11.85727 -11.80115 -11.50381 -11.31396 -11.19341 -11.10216 -11.04134 -10.95574 -10.81531 -10.60033 -10.48379 -10.15435 -10.06573 -9.76729 -9.26319 -8.98415 -8.93244 -8.75777 -8.58619 -8.12524 -6.16554 -4.26930 0.91724 1.23189 1.32718 3.29447 3.35112 3.38185 3.40312 3.48218 3.74241 4.35508 4.46280 4.58379 4.66364 4.87278 4.93280 5.00154 5.06046 5.10552 5.12463 5.18031 5.18742 5.28993 5.31622 5.40462 5.42253 5.47469 5.63670 5.66572 5.87195 5.92679 5.96039 6.05292 6.22489 6.29917 6.33501 6.41048 6.48618 6.57296 6.69297 6.86321 6.94154 6.95012 7.17829 7.24267 7.36191 7.78196 8.17721 8.78637 9.44445 10.91107 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.003592 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.612201 B = 7792.321809 C = 8583.611052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.096 3.904 4 C -0.075 4.075 5 C -0.101 4.101 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.100 4.100 9 C -0.088 4.088 10 C 0.153 3.847 11 N -1.130 6.130 12 S 2.606 3.394 13 O -0.972 6.972 14 O -0.948 6.948 15 C -0.554 4.554 16 C 0.043 3.957 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.410 0.590 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -17.741 -0.073 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.020 3.980 4 C -0.076 4.076 5 C -0.118 4.118 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.118 4.118 9 C -0.089 4.089 10 C 0.027 3.973 11 N -0.886 5.886 12 S 2.703 3.297 13 O -0.963 6.963 14 O -0.938 6.938 15 C -0.687 4.687 16 C 0.041 3.959 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.510 5.510 21 Si 0.718 3.282 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.245 4.245 26 C -0.180 4.180 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.242 0.758 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.180 -17.150 0.199 17.444 hybrid contribution -0.277 0.416 -0.618 0.795 sum 2.903 -16.734 -0.419 16.989 Atomic orbital electron populations 1.22772 0.80540 1.02823 1.00501 1.87805 1.19975 1.27487 1.95577 1.21364 0.90144 0.84966 1.01542 1.19539 0.93910 0.93343 1.00797 1.20973 0.94477 0.97395 0.99000 1.21195 0.93847 0.98530 1.00183 1.21172 0.99930 0.92473 1.00494 1.21126 0.93783 0.98090 0.98842 1.19596 0.93721 0.93804 1.01795 1.20169 0.99373 0.94025 0.83712 1.56076 1.84822 1.29962 1.17777 1.05204 0.77526 0.71810 0.75161 1.93511 1.86169 1.85286 1.31336 1.93535 1.49699 1.68149 1.82434 1.29986 1.17276 1.06141 1.15324 1.18273 0.91591 0.89756 0.96276 1.20522 1.23665 1.13073 0.98057 0.91357 1.24941 0.94190 0.97118 0.95966 1.69968 1.40125 1.40170 1.00776 0.86585 0.80088 0.83293 0.78263 1.20016 1.21073 1.19423 1.23198 1.08475 1.01531 0.91337 1.22550 0.96653 1.01066 0.97749 0.93712 0.93748 0.89539 0.91301 0.91343 0.85030 0.86078 0.85946 0.85267 0.90980 0.88964 0.75765 0.84821 0.88329 0.92724 0.90701 0.89503 0.89575 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.23 9.18 -35.23 -0.32 -4.55 16 3 C 0.10 1.05 5.17 36.01 0.19 1.23 16 4 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 5 C -0.10 -1.10 9.38 -39.58 -0.37 -1.47 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 8 C -0.10 -1.14 9.67 -39.58 -0.38 -1.52 16 9 C -0.09 -1.07 5.27 -104.62 -0.55 -1.62 16 10 C 0.15 2.04 5.67 -5.19 -0.03 2.01 16 11 N -1.13 -16.53 5.68 -11.65 -0.07 -16.59 16 12 S 2.61 51.22 5.19 -107.50 -0.56 50.67 16 13 O -0.97 -21.03 18.08 -57.54 -1.04 -22.07 16 14 O -0.95 -22.09 17.16 -57.54 -0.99 -23.08 16 15 C -0.55 -11.16 5.93 37.16 0.22 -10.94 16 16 C 0.04 1.03 1.32 -155.66 -0.21 0.83 16 17 C -0.52 -13.90 8.18 -34.44 -0.28 -14.18 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 20 N -0.87 -23.56 12.98 55.43 0.72 -22.84 16 21 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.21 -4.50 9.96 -26.70 -0.27 -4.76 16 26 C -0.14 -3.14 9.49 -26.70 -0.25 -3.40 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.73 7.93 -51.93 -0.41 0.31 16 31 H 0.07 0.70 7.55 -51.93 -0.39 0.31 16 32 H 0.13 1.36 7.01 -52.48 -0.37 0.99 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.38 8.04 -52.49 -0.42 0.95 16 36 H 0.07 0.85 7.06 -51.93 -0.37 0.49 16 37 H 0.09 1.29 7.55 -51.92 -0.39 0.90 16 38 H 0.41 5.29 8.60 -34.47 -0.30 4.99 16 39 H 0.13 2.77 8.14 -51.92 -0.42 2.34 16 40 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 41 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -32.79 390.78 -10.56 -43.35 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.84 Total: 8.15 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -2.33 Total: -35.01 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.65 Total: -39.44 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.35 Total: -49.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 51.22 SS G_CDS: -0.56 Total: 50.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.79 -10.56 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346429576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.652 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds