Wall clock time and date at job start Tue Mar 31 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99972 * 2 1 4 4 C 1.38733 * 120.05335 * 180.02562 * 3 2 1 5 5 C 1.38150 * 119.94302 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05041 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.93999 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47124 * 89.99809 * 7 6 5 9 9 C 1.46498 * 120.00034 * 274.99989 * 8 7 6 10 10 S 1.65593 * 119.99702 * 95.00214 * 8 7 6 11 11 O 1.42103 * 104.27756 * 153.92811 * 10 8 7 12 12 O 1.42103 * 104.28187 * 26.07155 * 10 8 7 13 13 C 1.81400 * 104.45141 * 269.99921 * 10 8 7 14 14 C 1.52999 * 109.47387 * 186.38797 * 13 10 8 15 15 C 1.50699 * 115.54736 * 295.12709 * 14 13 10 16 16 H 1.08006 * 119.99495 * 96.11250 * 15 14 13 17 17 C 1.37876 * 120.00242 * 275.83702 * 15 14 13 18 18 N 1.31518 * 119.99998 * 191.26084 * 17 15 14 19 19 Si 1.86796 * 119.99974 * 11.25542 * 17 15 14 20 20 H 1.48502 * 109.46843 * 84.15785 * 19 17 15 21 21 H 1.48503 * 109.47218 * 204.15727 * 19 17 15 22 22 H 1.48501 * 109.47470 * 324.15788 * 19 17 15 23 23 C 1.52995 * 117.49988 * 80.80373 * 14 13 10 24 24 C 1.53002 * 117.49834 * 149.46194 * 14 13 10 25 25 C 1.38258 * 120.11760 * 0.25377 * 6 5 4 26 26 C 1.38145 * 120.05614 * 359.44620 * 25 6 5 27 27 H 1.09003 * 109.46718 * 299.99684 * 1 2 3 28 28 H 1.08995 * 109.47104 * 59.99469 * 1 2 3 29 29 H 1.09001 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.03151 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.96944 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47288 * 329.99788 * 7 6 5 33 33 H 1.09005 * 109.47390 * 210.00288 * 7 6 5 34 34 H 1.08999 * 109.47377 * 270.00042 * 9 8 7 35 35 H 1.09002 * 109.47236 * 29.99877 * 9 8 7 36 36 H 1.09000 * 109.46717 * 149.99806 * 9 8 7 37 37 H 1.09000 * 109.46754 * 66.38438 * 13 10 8 38 38 H 1.09000 * 109.47169 * 306.39033 * 13 10 8 39 39 H 0.96995 * 119.99874 * 180.02562 * 18 17 15 40 40 H 1.09000 * 117.49873 * 215.00434 * 23 14 13 41 41 H 1.09002 * 117.49745 * 0.02562 * 23 14 13 42 42 H 1.09001 * 117.49729 * 359.97434 * 24 14 13 43 43 H 1.08996 * 117.49920 * 144.97180 * 24 14 13 44 44 H 1.08002 * 119.97760 * 179.70496 * 25 6 5 45 45 H 1.07993 * 120.03230 * 180.25330 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2072 5.4551 -1.3781 9 6 5.3966 5.0068 -2.1065 10 16 3.1128 6.4554 -2.1154 11 8 3.8739 7.1438 -3.0984 12 8 2.4987 7.1552 -1.0418 13 6 1.9279 5.3290 -2.9015 14 6 0.9468 6.1352 -3.7549 15 6 0.0488 7.0785 -2.9968 16 1 0.3179 8.1201 -2.9007 17 6 -1.1190 6.6131 -2.4306 18 7 -2.0080 7.4628 -1.9643 19 14 -1.4387 4.7756 -2.3260 20 1 -0.7789 4.2267 -1.1142 21 1 -2.9014 4.5314 -2.2469 22 1 -0.8900 4.1081 -3.5338 23 6 1.4115 6.5678 -5.1470 24 6 0.3694 5.4565 -4.9987 25 6 1.9212 3.6048 0.0080 26 6 1.2915 2.3752 0.0012 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3799 -0.0005 31 1 5.1346 2.5750 0.0000 32 1 4.9443 4.9377 0.5161 33 1 3.3583 5.7458 0.5177 34 1 6.2097 5.7145 -1.9453 35 1 5.6945 4.0226 -1.7450 36 1 5.1703 4.9496 -3.1713 37 1 1.3789 4.7851 -2.1328 38 1 2.4638 4.6217 -3.5343 39 1 -2.8294 7.1353 -1.5657 40 1 1.0678 7.5347 -5.5144 41 1 2.4161 6.2776 -5.4549 42 1 0.6887 4.4358 -5.2091 43 1 -0.6601 5.6920 -5.2683 44 1 1.3342 4.5114 0.0140 45 1 0.2130 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346432875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:57 Heat of formation + Delta-G solvation = -47.325667 kcal Electronic energy + Delta-G solvation = -29069.770858 eV Core-core repulsion = 25181.268997 eV Total energy + Delta-G solvation = -3888.501861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23525 -38.07141 -37.11934 -36.42734 -35.74603 -35.13239 -32.20041 -31.30332 -30.81857 -28.52920 -27.99295 -26.62559 -25.58469 -24.36314 -22.64373 -21.70481 -21.28971 -19.40190 -18.40002 -18.23587 -17.19604 -16.74179 -16.23255 -16.08674 -15.86063 -15.63721 -15.10861 -15.00295 -14.49978 -14.24127 -13.98252 -13.83880 -13.59881 -13.37159 -13.05307 -12.74902 -12.68099 -12.50316 -12.27206 -12.13832 -12.06032 -11.71876 -11.43553 -11.28305 -11.25813 -11.15824 -10.96011 -10.90371 -10.77929 -10.71272 -10.40209 -10.23932 -9.69352 -9.12195 -9.03354 -8.98857 -8.65754 -8.41762 -8.21152 -6.21022 -4.26330 0.85372 1.29226 1.33352 3.12538 3.14307 3.20355 3.24823 3.31566 3.74578 4.31387 4.44110 4.69309 4.71293 4.78489 4.82693 4.88186 4.90427 5.00261 5.02053 5.03846 5.23471 5.28451 5.33084 5.42693 5.43792 5.53957 5.61739 5.68153 5.79955 5.82700 5.91193 5.98589 6.05908 6.11001 6.18112 6.20823 6.34881 6.46336 6.57233 6.64174 6.67105 6.76365 6.88431 7.08448 7.26959 7.59160 8.34551 8.85763 9.41554 10.90414 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.006374 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.581865 B = 4392.070302 C = 6172.030377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.155 4.155 5 C -0.065 4.065 6 C -0.146 4.146 7 C 0.157 3.843 8 N -1.009 6.009 9 C 0.096 3.904 10 S 2.611 3.389 11 O -0.963 6.963 12 O -0.938 6.938 13 C -0.577 4.577 14 C -0.003 4.003 15 C -0.509 4.509 16 H 0.086 0.914 17 C 0.094 3.906 18 N -0.880 5.880 19 Si 0.850 3.150 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.244 1.244 23 C -0.180 4.180 24 C -0.170 4.170 25 C -0.071 4.071 26 C -0.203 4.203 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.267 0.733 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 -14.412 3.780 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.174 4.174 5 C -0.084 4.084 6 C -0.148 4.148 7 C 0.032 3.968 8 N -0.845 5.845 9 C -0.050 4.050 10 S 2.707 3.293 11 O -0.953 6.953 12 O -0.928 6.928 13 C -0.708 4.708 14 C -0.005 4.005 15 C -0.546 4.546 16 H 0.104 0.896 17 C -0.111 4.111 18 N -0.515 5.515 19 Si 0.677 3.323 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.168 1.168 23 C -0.217 4.217 24 C -0.208 4.208 25 C -0.090 4.090 26 C -0.221 4.221 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.152 0.848 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.797 -13.610 3.913 17.808 hybrid contribution -0.961 -1.718 -0.016 1.968 sum 9.836 -15.327 3.897 18.624 Atomic orbital electron populations 1.23086 0.78300 1.03857 1.01794 1.86032 1.21473 1.27031 1.88767 1.19075 0.92425 0.84043 0.96347 1.20370 0.91196 0.98553 1.07248 1.20813 0.99536 0.90797 0.97231 1.20306 0.93750 0.96158 1.04614 1.20221 1.01366 0.92441 0.82798 1.57938 1.36275 1.68308 1.21974 1.21388 0.87505 0.99951 0.96140 1.05148 0.74181 0.75283 0.74660 1.93507 1.69130 1.70321 1.62390 1.93558 1.76974 1.69162 1.53098 1.30364 1.14292 1.14256 1.11935 1.18869 0.97063 0.98085 0.86518 1.20318 1.04347 0.95676 1.34260 0.89634 1.24881 0.95045 0.97346 0.93877 1.69913 1.08330 1.34508 1.38753 0.87308 0.77458 0.87363 0.80216 1.19603 1.21574 1.16780 1.23050 0.97775 0.99547 1.01321 1.22966 0.98481 0.95281 1.04119 1.21193 0.94242 0.98015 0.95519 1.21329 1.00420 0.92265 1.08114 0.92488 0.92477 0.88192 0.85296 0.85281 0.89345 0.87674 0.92503 0.91440 0.91356 0.86238 0.87608 0.92310 0.88701 0.90162 0.90955 0.89088 0.84816 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.03 10.50 -19.43 -0.20 -4.24 16 3 C 0.13 1.70 6.69 -39.21 -0.26 1.44 16 4 C -0.16 -1.83 9.99 -39.43 -0.39 -2.22 16 5 C -0.07 -0.73 9.40 -39.60 -0.37 -1.10 16 6 C -0.15 -1.95 5.46 -104.60 -0.57 -2.53 16 7 C 0.16 2.08 5.76 -5.19 -0.03 2.05 16 8 N -1.01 -15.08 3.10 -123.05 -0.38 -15.46 16 9 C 0.10 1.11 10.22 59.85 0.61 1.72 16 10 S 2.61 52.57 5.10 -107.50 -0.55 52.02 16 11 O -0.96 -20.88 17.09 -57.54 -0.98 -21.87 16 12 O -0.94 -22.08 16.20 -57.54 -0.93 -23.01 16 13 C -0.58 -11.56 5.78 37.16 0.21 -11.35 16 14 C 0.00 -0.06 0.80 -155.66 -0.13 -0.19 16 15 C -0.51 -14.13 8.70 -34.44 -0.30 -14.43 16 16 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 17 C 0.09 2.62 5.46 -17.82 -0.10 2.53 16 18 N -0.88 -26.30 13.96 55.43 0.77 -25.52 16 19 Si 0.85 19.96 25.44 -169.99 -4.33 15.63 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.24 -5.36 5.42 56.52 0.31 -5.06 16 23 C -0.18 -3.74 9.96 -26.70 -0.27 -4.01 16 24 C -0.17 -3.54 7.22 -26.69 -0.19 -3.73 16 25 C -0.07 -1.11 8.21 -39.61 -0.33 -1.43 16 26 C -0.20 -2.99 9.04 -39.43 -0.36 -3.35 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.05 7.84 -52.49 -0.41 0.64 16 32 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.11 1.54 6.76 -51.93 -0.35 1.19 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.58 7.55 -51.93 -0.39 0.19 16 36 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 37 H 0.12 2.40 4.22 -51.92 -0.22 2.18 16 38 H 0.11 1.76 8.09 -51.92 -0.42 1.34 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.96 8.01 -51.93 -0.42 1.54 16 44 H 0.13 2.32 7.64 -52.49 -0.40 1.92 16 45 H 0.13 1.84 6.30 -52.49 -0.33 1.51 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -34.14 376.23 -9.15 -43.29 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.75 Total: 8.82 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: -1.47 Total: -35.35 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.39 Total: -40.98 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.12 Total: -49.11 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.33 Total: 15.63 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.55 Total: 52.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.14 -9.15 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346432875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.033 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds