Wall clock time and date at job start Tue Mar 31 2020 23:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99972 * 2 1 4 4 C 1.38733 * 120.05335 * 180.02562 * 3 2 1 5 5 C 1.38150 * 119.94302 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05041 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.93999 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47124 * 89.99809 * 7 6 5 9 9 C 1.46498 * 120.00034 * 274.99989 * 8 7 6 10 10 S 1.65593 * 119.99702 * 95.00214 * 8 7 6 11 11 O 1.42103 * 104.27756 * 153.92811 * 10 8 7 12 12 O 1.42103 * 104.28187 * 26.07155 * 10 8 7 13 13 C 1.81400 * 104.45141 * 269.99921 * 10 8 7 14 14 C 1.52999 * 109.47387 * 186.38797 * 13 10 8 15 15 C 1.50699 * 115.54736 * 295.12709 * 14 13 10 16 16 H 1.08006 * 119.99495 * 96.11250 * 15 14 13 17 17 C 1.37876 * 120.00242 * 275.83702 * 15 14 13 18 18 N 1.31518 * 119.99998 * 191.26084 * 17 15 14 19 19 Si 1.86796 * 119.99974 * 11.25542 * 17 15 14 20 20 H 1.48502 * 109.46843 * 84.15785 * 19 17 15 21 21 H 1.48503 * 109.47218 * 204.15727 * 19 17 15 22 22 H 1.48501 * 109.47470 * 324.15788 * 19 17 15 23 23 C 1.52995 * 117.49988 * 80.80373 * 14 13 10 24 24 C 1.53002 * 117.49834 * 149.46194 * 14 13 10 25 25 C 1.38258 * 120.11760 * 0.25377 * 6 5 4 26 26 C 1.38145 * 120.05614 * 359.44620 * 25 6 5 27 27 H 1.09003 * 109.46718 * 299.99684 * 1 2 3 28 28 H 1.08995 * 109.47104 * 59.99469 * 1 2 3 29 29 H 1.09001 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.03151 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.96944 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47288 * 329.99788 * 7 6 5 33 33 H 1.09005 * 109.47390 * 210.00288 * 7 6 5 34 34 H 1.08999 * 109.47377 * 270.00042 * 9 8 7 35 35 H 1.09002 * 109.47236 * 29.99877 * 9 8 7 36 36 H 1.09000 * 109.46717 * 149.99806 * 9 8 7 37 37 H 1.09000 * 109.46754 * 66.38438 * 13 10 8 38 38 H 1.09000 * 109.47169 * 306.39033 * 13 10 8 39 39 H 0.96995 * 119.99874 * 180.02562 * 18 17 15 40 40 H 1.09000 * 117.49873 * 215.00434 * 23 14 13 41 41 H 1.09002 * 117.49745 * 0.02562 * 23 14 13 42 42 H 1.09001 * 117.49729 * 359.97434 * 24 14 13 43 43 H 1.08996 * 117.49920 * 144.97180 * 24 14 13 44 44 H 1.08002 * 119.97760 * 179.70496 * 25 6 5 45 45 H 1.07993 * 120.03230 * 180.25330 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2072 5.4551 -1.3781 9 6 5.3966 5.0068 -2.1065 10 16 3.1128 6.4554 -2.1154 11 8 3.8739 7.1438 -3.0984 12 8 2.4987 7.1552 -1.0418 13 6 1.9279 5.3290 -2.9015 14 6 0.9468 6.1352 -3.7549 15 6 0.0488 7.0785 -2.9968 16 1 0.3179 8.1201 -2.9007 17 6 -1.1190 6.6131 -2.4306 18 7 -2.0080 7.4628 -1.9643 19 14 -1.4387 4.7756 -2.3260 20 1 -0.7789 4.2267 -1.1142 21 1 -2.9014 4.5314 -2.2469 22 1 -0.8900 4.1081 -3.5338 23 6 1.4115 6.5678 -5.1470 24 6 0.3694 5.4565 -4.9987 25 6 1.9212 3.6048 0.0080 26 6 1.2915 2.3752 0.0012 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3799 -0.0005 31 1 5.1346 2.5750 0.0000 32 1 4.9443 4.9377 0.5161 33 1 3.3583 5.7458 0.5177 34 1 6.2097 5.7145 -1.9453 35 1 5.6945 4.0226 -1.7450 36 1 5.1703 4.9496 -3.1713 37 1 1.3789 4.7851 -2.1328 38 1 2.4638 4.6217 -3.5343 39 1 -2.8294 7.1353 -1.5657 40 1 1.0678 7.5347 -5.5144 41 1 2.4161 6.2776 -5.4549 42 1 0.6887 4.4358 -5.2091 43 1 -0.6601 5.6920 -5.2683 44 1 1.3342 4.5114 0.0140 45 1 0.2130 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346432875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:56 Heat of formation + Delta-G solvation = -71.730615 kcal Electronic energy + Delta-G solvation = -29070.829136 eV Core-core repulsion = 25181.268997 eV Total energy + Delta-G solvation = -3889.560139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16445 -39.02794 -38.86976 -38.07142 -36.98641 -36.61397 -34.33971 -32.25201 -31.80388 -30.14254 -28.82210 -27.66066 -27.52701 -25.45154 -23.57343 -23.37826 -22.29490 -21.21747 -19.86990 -19.18054 -18.70971 -18.48222 -17.43034 -17.23718 -17.06751 -16.74621 -16.70783 -16.38998 -15.70971 -15.58490 -15.42880 -14.94976 -14.77546 -14.66948 -14.50495 -14.28969 -13.95093 -13.67082 -13.55978 -13.32695 -13.24705 -13.03992 -12.92470 -12.77921 -12.70153 -12.47998 -12.40701 -12.38177 -12.17284 -11.99567 -11.87989 -11.74982 -11.64011 -10.86327 -10.79750 -10.38821 -10.01086 -9.89757 -9.17678 -8.37119 -6.47832 -0.65187 0.31997 0.33929 1.26879 1.30618 1.43929 1.88905 2.31122 2.32021 2.74503 2.87494 2.93690 3.13340 3.27499 3.67473 3.76162 3.84187 3.89296 3.98264 4.05730 4.22426 4.28667 4.30082 4.34635 4.36638 4.39305 4.56254 4.56703 4.66606 4.70200 4.71738 4.84011 4.85294 4.96735 4.99075 5.01609 5.09620 5.17594 5.25429 5.35549 5.43377 5.56849 5.59259 5.70484 5.77613 6.16395 6.35851 6.61920 7.23884 8.78820 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.006374 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.581865 B = 4392.070302 C = 6172.030377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.120 3.880 4 C -0.151 4.151 5 C -0.048 4.048 6 C -0.149 4.149 7 C 0.153 3.847 8 N -0.999 5.999 9 C 0.082 3.918 10 S 2.612 3.388 11 O -0.986 6.986 12 O -0.990 6.990 13 C -0.573 4.573 14 C -0.034 4.034 15 C -0.513 4.513 16 H 0.028 0.972 17 C 0.034 3.966 18 N -0.937 5.937 19 Si 0.909 3.091 20 H -0.252 1.252 21 H -0.293 1.293 22 H -0.211 1.211 23 C -0.175 4.175 24 C -0.155 4.155 25 C -0.096 4.096 26 C -0.220 4.220 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.149 0.851 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.911 -19.101 3.091 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.066 4.066 6 C -0.151 4.151 7 C 0.028 3.972 8 N -0.837 5.837 9 C -0.062 4.062 10 S 2.709 3.291 11 O -0.977 6.977 12 O -0.980 6.980 13 C -0.705 4.705 14 C -0.037 4.037 15 C -0.550 4.550 16 H 0.046 0.954 17 C -0.166 4.166 18 N -0.575 5.575 19 Si 0.730 3.270 20 H -0.177 1.177 21 H -0.219 1.219 22 H -0.132 1.132 23 C -0.212 4.212 24 C -0.194 4.194 25 C -0.116 4.116 26 C -0.239 4.239 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.167 0.833 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.912 -18.289 3.205 23.201 hybrid contribution -1.857 -0.192 0.222 1.880 sum 12.055 -18.482 3.427 22.330 Atomic orbital electron populations 1.23313 0.77121 1.05681 1.01642 1.86027 1.22759 1.26585 1.88615 1.19293 0.93308 0.83756 0.96192 1.20777 0.90586 0.99892 1.05667 1.21189 1.01337 0.89293 0.94802 1.20300 0.92826 0.96957 1.05041 1.20417 1.03133 0.91845 0.81799 1.57517 1.35964 1.67755 1.22478 1.21796 0.85956 1.02305 0.96189 1.04731 0.74465 0.75902 0.74006 1.93462 1.69458 1.71699 1.63038 1.93497 1.78366 1.71418 1.54713 1.30227 1.13824 1.14312 1.12104 1.18776 0.98302 0.99253 0.87359 1.20399 1.05478 0.94317 1.34852 0.95384 1.25827 0.94608 1.02840 0.93328 1.70077 1.09273 1.37237 1.40878 0.86381 0.77297 0.80961 0.82323 1.17704 1.21922 1.13250 1.23134 0.99469 0.99353 0.99229 1.23053 0.98053 0.97060 1.01241 1.21072 0.95452 0.97076 0.97950 1.21314 1.00412 0.92682 1.09475 0.92372 0.92968 0.85414 0.82629 0.81076 0.84957 0.90357 0.91618 0.87343 0.91112 0.86365 0.83299 0.92298 0.90127 0.87082 0.87127 0.90237 0.88204 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.28 10.50 -92.45 -0.97 -8.25 16 3 C 0.12 2.88 6.69 22.51 0.15 3.03 16 4 C -0.15 -2.83 9.99 22.37 0.22 -2.61 16 5 C -0.05 -0.82 9.40 22.26 0.21 -0.61 16 6 C -0.15 -3.57 5.46 -19.85 -0.11 -3.68 16 7 C 0.15 3.70 5.76 85.63 0.49 4.19 16 8 N -1.00 -27.43 3.10 -543.21 -1.68 -29.11 16 9 C 0.08 1.52 10.22 127.77 1.31 2.83 16 10 S 2.61 105.23 5.10 -56.49 -0.29 104.94 16 11 O -0.99 -42.54 17.09 -127.65 -2.18 -44.72 16 12 O -0.99 -49.37 16.20 -127.65 -2.07 -51.44 16 13 C -0.57 -22.06 5.78 71.98 0.42 -21.65 16 14 C -0.03 -1.58 0.80 -52.93 -0.04 -1.62 16 15 C -0.51 -30.03 8.70 25.60 0.22 -29.80 16 16 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 17 C 0.03 1.97 5.46 84.65 0.46 2.44 16 18 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 19 Si 0.91 41.78 25.44 68.60 1.75 43.52 16 20 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.21 -8.45 5.42 99.48 0.54 -7.91 16 23 C -0.17 -7.05 9.96 30.62 0.30 -6.75 16 24 C -0.16 -6.09 7.22 30.62 0.22 -5.87 16 25 C -0.10 -2.94 8.21 22.25 0.18 -2.76 16 26 C -0.22 -6.21 9.04 22.37 0.20 -6.01 16 27 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 28 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.17 1.48 7.84 -2.91 -0.02 1.46 16 32 H 0.13 2.04 8.05 -2.38 -0.02 2.02 16 33 H 0.08 2.34 6.76 -2.38 -0.02 2.33 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.15 7.55 -2.39 -0.02 1.14 16 36 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 37 H 0.12 4.63 4.22 -2.39 -0.01 4.62 16 38 H 0.15 4.32 8.09 -2.39 -0.02 4.31 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.08 3.30 8.01 -2.39 -0.02 3.28 16 44 H 0.10 3.65 7.64 -2.91 -0.02 3.63 16 45 H 0.12 3.44 6.30 -2.91 -0.02 3.42 16 Total: -1.00 -82.01 376.23 1.03 -80.99 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.82 Total: 30.87 kcal Atomic # 6 Polarization: -72.82 SS G_CDS: 5.36 Total: -67.46 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.38 Total: -88.44 kcal Atomic # 8 Polarization: -99.20 SS G_CDS: -5.22 Total: -104.41 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.75 Total: 43.52 kcal Atomic # 16 Polarization: 105.23 SS G_CDS: -0.29 Total: 104.94 kcal Total: -82.01 1.03 -80.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346432875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.255 kcal (2) G-P(sol) polarization free energy of solvation -82.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds