Wall clock time and date at job start Tue Mar 31 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00106 * 2 1 4 4 C 1.53005 * 109.47112 * 274.99930 * 3 2 1 5 5 O 1.42900 * 109.46903 * 64.99872 * 4 3 2 6 6 C 1.35904 * 116.99559 * 180.02562 * 5 4 3 7 7 C 1.38727 * 120.05964 * 359.72015 * 6 5 4 8 8 C 1.38149 * 119.94473 * 179.74294 * 7 6 5 9 9 C 1.38265 * 120.05668 * 0.51681 * 8 7 6 10 10 C 1.38272 * 120.10679 * 359.76266 * 9 8 7 11 11 C 1.38144 * 120.05705 * 359.97438 * 10 9 8 12 12 S 1.65607 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.42102 * 104.27556 * 153.93004 * 12 2 1 14 14 O 1.42098 * 104.27465 * 26.06981 * 12 2 1 15 15 C 1.81401 * 104.44534 * 270.00056 * 12 2 1 16 16 C 1.53010 * 109.46704 * 184.14025 * 15 12 2 17 17 C 1.50700 * 115.54846 * 294.79756 * 16 15 12 18 18 H 1.08007 * 119.99743 * 95.18983 * 17 16 15 19 19 C 1.37873 * 120.00383 * 274.91445 * 17 16 15 20 20 N 1.31521 * 119.99920 * 6.52871 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 186.53062 * 19 17 16 22 22 H 1.48508 * 109.47146 * 89.99984 * 21 19 17 23 23 H 1.48497 * 109.47182 * 209.99404 * 21 19 17 24 24 H 1.48498 * 109.47279 * 329.99874 * 21 19 17 25 25 C 1.52996 * 117.50073 * 80.47127 * 16 15 12 26 26 C 1.52997 * 117.49780 * 149.13454 * 16 15 12 27 27 H 1.08997 * 109.47018 * 270.00115 * 1 2 3 28 28 H 1.09001 * 109.47232 * 30.00526 * 1 2 3 29 29 H 1.09004 * 109.47025 * 150.00395 * 1 2 3 30 30 H 1.08997 * 109.47381 * 34.99698 * 3 2 1 31 31 H 1.08997 * 109.47732 * 154.99999 * 3 2 1 32 32 H 1.09001 * 109.47259 * 184.99897 * 4 3 2 33 33 H 1.08999 * 109.47031 * 304.99764 * 4 3 2 34 34 H 1.08003 * 120.02885 * 0.02562 * 7 6 5 35 35 H 1.08005 * 119.96850 * 180.27812 * 8 7 6 36 36 H 1.07994 * 119.94815 * 179.74517 * 9 8 7 37 37 H 1.08002 * 119.96802 * 180.02562 * 10 9 8 38 38 H 1.08005 * 120.02306 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47333 * 64.14268 * 15 12 2 40 40 H 1.08994 * 109.47437 * 304.13506 * 15 12 2 41 41 H 0.96990 * 119.99820 * 185.07344 * 20 19 17 42 42 H 1.08989 * 117.50053 * 215.00278 * 25 16 15 43 43 H 1.09000 * 117.49601 * 0.02562 * 25 16 15 44 44 H 1.09003 * 117.50042 * 359.97191 * 26 16 15 45 45 H 1.08999 * 117.50207 * 144.97573 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 8 1.0529 2.0818 -1.9671 6 6 1.0050 2.5456 -3.2436 7 6 2.1766 2.7060 -3.9691 8 6 2.1247 3.1726 -5.2684 9 6 0.9074 3.4898 -5.8422 10 6 -0.2612 3.3363 -5.1192 11 6 -0.2151 2.8650 -3.8215 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1194 -0.6047 14 8 1.3969 -2.3564 -0.6041 15 6 2.5193 -1.8253 1.7575 16 6 3.3698 -3.0900 1.8929 17 6 2.7447 -4.3537 1.3606 18 1 2.9677 -4.6853 0.3572 19 6 1.8925 -5.0896 2.1564 20 7 1.5237 -4.6252 3.3303 21 14 1.2619 -6.7463 1.5673 22 1 2.1945 -7.8155 2.0061 23 1 -0.0839 -6.9967 2.1428 24 1 1.1739 -6.7439 0.0850 25 6 4.8861 -2.9397 1.7555 26 6 4.2647 -3.2106 3.1280 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 2.9640 2.6694 -1.4462 33 1 2.8119 1.0010 -2.0474 34 1 3.1280 2.4619 -3.5201 35 1 3.0362 3.2933 -5.8351 36 1 0.8692 3.8583 -6.8566 37 1 -1.2109 3.5844 -5.5697 38 1 -1.1282 2.7457 -3.2571 39 1 1.5468 -1.9901 2.2212 40 1 3.0220 -0.9947 2.2528 41 1 0.9845 -5.1736 3.9211 42 1 5.4316 -3.7548 1.2801 43 1 5.2779 -1.9398 1.5690 44 1 4.2480 -2.3887 3.8438 45 1 4.4012 -4.2038 3.5557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346441195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:49 Heat of formation + Delta-G solvation = -74.544848 kcal Electronic energy + Delta-G solvation = -27769.936051 eV Core-core repulsion = 23880.253879 eV Total energy + Delta-G solvation = -3889.682173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.03248 -38.65743 -38.56962 -38.00730 -37.04653 -36.66746 -34.09603 -32.11182 -31.42278 -30.14781 -29.86151 -27.55044 -26.86995 -24.50652 -23.30199 -22.99449 -22.50305 -21.39735 -19.81534 -19.31617 -18.40988 -18.35952 -17.53741 -17.10157 -16.86791 -16.76161 -16.57240 -16.41801 -15.67341 -15.44368 -15.31166 -15.01843 -14.87926 -14.32346 -14.15539 -13.90869 -13.75664 -13.63317 -13.55652 -13.28918 -13.17552 -12.97963 -12.92289 -12.84161 -12.55082 -12.48079 -12.41858 -12.38594 -12.22414 -11.92984 -11.76144 -11.70884 -11.53231 -10.86986 -10.56244 -10.20006 -9.93737 -9.76153 -9.13724 -8.21889 -6.36089 -0.56405 0.40797 0.51762 1.35887 1.39023 1.49416 1.89063 2.25156 2.38876 2.86867 2.97852 3.06559 3.33039 3.39587 3.69407 3.83515 3.97134 4.03377 4.06823 4.22120 4.27631 4.28062 4.34380 4.43937 4.50344 4.52155 4.59396 4.60722 4.68028 4.78710 4.82502 4.85436 4.97456 5.03251 5.09295 5.11256 5.21224 5.39748 5.45588 5.50160 5.59116 5.61522 5.65170 5.70345 5.89222 6.20759 6.47117 6.70722 7.36820 8.85942 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.002935 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.354623 B = 9536.973935 C =10009.145026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.003 6.003 3 C 0.120 3.880 4 C 0.035 3.965 5 O -0.319 6.319 6 C 0.107 3.893 7 C -0.228 4.228 8 C -0.089 4.089 9 C -0.167 4.167 10 C -0.084 4.084 11 C -0.171 4.171 12 S 2.615 3.385 13 O -0.986 6.986 14 O -0.993 6.993 15 C -0.550 4.550 16 C 0.008 3.992 17 C -0.533 4.533 18 H 0.046 0.954 19 C 0.042 3.958 20 N -0.891 5.891 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.195 4.195 26 C -0.137 4.137 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 19.867 -9.152 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.841 5.841 3 C -0.005 4.005 4 C -0.042 4.042 5 O -0.233 6.233 6 C 0.061 3.939 7 C -0.246 4.246 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.102 4.102 11 C -0.190 4.190 12 S 2.713 3.287 13 O -0.976 6.976 14 O -0.984 6.984 15 C -0.683 4.683 16 C 0.005 3.995 17 C -0.570 4.570 18 H 0.064 0.936 19 C -0.161 4.161 20 N -0.528 5.528 21 Si 0.758 3.242 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.202 1.202 25 C -0.232 4.232 26 C -0.176 4.176 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.245 19.372 -9.666 21.685 hybrid contribution -0.244 -1.254 0.530 1.383 sum -1.489 18.118 -9.136 20.345 Atomic orbital electron populations 1.21684 0.77700 1.04082 1.02726 1.57412 1.15893 1.20702 1.90136 1.21666 0.98834 0.85361 0.94631 1.23534 0.83676 1.00948 0.96007 1.86037 1.32250 1.79329 1.25694 1.19417 0.95112 0.94837 0.84497 1.21541 0.97730 1.07867 0.97486 1.21303 0.99416 0.96088 0.93847 1.21429 0.92194 1.03296 1.01534 1.21330 0.99903 0.96326 0.92665 1.20734 0.95936 1.05338 0.96992 1.04717 0.73027 0.72461 0.78468 1.93447 1.45188 1.83642 1.75367 1.93465 1.65572 1.63626 1.75699 1.29908 1.09815 1.05934 1.22655 1.18419 0.87489 0.91417 1.02137 1.20736 1.27767 1.08400 1.00125 0.93590 1.25499 0.94724 1.00551 0.95345 1.70046 1.36224 1.36859 1.09634 0.85933 0.78382 0.81122 0.78755 1.19221 1.20018 1.20226 1.23261 0.96466 1.02105 1.01416 1.22507 1.04193 1.00658 0.90250 0.91199 0.88476 0.92355 0.86219 0.86525 0.88229 0.93235 0.85057 0.83860 0.83506 0.82940 0.84685 0.86223 0.84608 0.92549 0.90027 0.87920 0.89198 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.46 127.77 1.34 3.62 16 2 N -1.00 -29.92 3.10 -539.14 -1.67 -31.60 16 3 C 0.12 2.62 5.69 86.38 0.49 3.11 16 4 C 0.04 0.81 5.08 71.98 0.37 1.17 16 5 O -0.32 -8.07 8.51 -92.46 -0.79 -8.86 16 6 C 0.11 2.62 6.69 22.50 0.15 2.77 16 7 C -0.23 -5.07 9.04 22.37 0.20 -4.87 16 8 C -0.09 -1.63 10.04 22.25 0.22 -1.40 16 9 C -0.17 -2.72 10.04 22.28 0.22 -2.49 16 10 C -0.08 -1.44 10.04 22.26 0.22 -1.22 16 11 C -0.17 -3.67 9.99 22.37 0.22 -3.44 16 12 S 2.62 105.64 5.13 -56.49 -0.29 105.35 16 13 O -0.99 -41.10 16.76 -127.65 -2.14 -43.24 16 14 O -0.99 -49.55 16.13 -127.65 -2.06 -51.61 16 15 C -0.55 -22.43 6.03 71.99 0.43 -22.00 16 16 C 0.01 0.36 1.33 -52.93 -0.07 0.29 16 17 C -0.53 -29.84 8.10 25.60 0.21 -29.63 16 18 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 19 C 0.04 2.30 5.39 84.65 0.46 2.76 16 20 N -0.89 -49.31 12.93 21.45 0.28 -49.04 16 21 Si 0.93 44.47 29.55 68.60 2.03 46.50 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 25 C -0.20 -8.22 9.96 30.62 0.30 -7.91 16 26 C -0.14 -6.04 9.44 30.62 0.29 -5.75 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.10 2.28 6.67 -2.39 -0.02 2.26 16 29 H 0.06 1.89 6.91 -2.39 -0.02 1.87 16 30 H 0.12 1.87 8.11 -2.39 -0.02 1.85 16 31 H 0.12 2.20 7.61 -2.39 -0.02 2.18 16 32 H 0.10 1.67 7.65 -2.39 -0.02 1.65 16 33 H 0.05 1.38 7.44 -2.39 -0.02 1.36 16 34 H 0.13 2.70 6.30 -2.91 -0.02 2.68 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.12 5.22 8.14 -2.39 -0.02 5.20 16 40 H 0.14 4.32 8.09 -2.39 -0.02 4.30 16 41 H 0.27 13.93 8.32 -92.72 -0.77 13.16 16 42 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 44 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 45 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -72.88 386.75 1.39 -71.49 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.97 Total: 26.00 kcal Atomic # 6 Polarization: -70.06 SS G_CDS: 5.06 Total: -65.00 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.40 Total: -80.63 kcal Atomic # 8 Polarization: -98.72 SS G_CDS: -4.99 Total: -103.70 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 105.64 SS G_CDS: -0.29 Total: 105.35 kcal Total: -72.88 1.39 -71.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds