Wall clock time and date at job start Tue Mar 31 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35903 * 117.00163 * 2 1 4 4 C 1.38754 * 120.05198 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94072 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.05325 * 359.71868 * 5 4 3 7 7 C 1.38240 * 120.11341 * 0.55921 * 6 5 4 8 8 C 1.38175 * 120.05270 * 359.44218 * 7 6 5 9 9 C 1.50697 * 120.02472 * 180.29935 * 8 7 6 10 10 N 1.46501 * 109.47351 * 259.99969 * 9 8 7 11 11 C 1.46498 * 119.99941 * 275.00450 * 10 9 8 12 12 S 1.65597 * 119.99872 * 94.99977 * 10 9 8 13 13 O 1.42102 * 104.27974 * 206.07271 * 12 10 9 14 14 O 1.42100 * 104.27715 * 333.93218 * 12 10 9 15 15 C 1.81404 * 104.44763 * 90.00305 * 12 10 9 16 16 C 1.52998 * 109.47213 * 174.01076 * 15 12 10 17 17 C 1.50701 * 115.54820 * 65.27441 * 16 15 12 18 18 H 1.08000 * 120.00264 * 268.54324 * 17 16 15 19 19 C 1.37880 * 119.99922 * 88.54958 * 17 16 15 20 20 N 1.31519 * 120.00196 * 174.69783 * 19 17 16 21 21 Si 1.86801 * 119.99885 * 354.69604 * 19 17 16 22 22 H 1.48504 * 109.46724 * 92.55401 * 21 19 17 23 23 H 1.48496 * 109.47049 * 212.55399 * 21 19 17 24 24 H 1.48495 * 109.46914 * 332.55606 * 21 19 17 25 25 C 1.53000 * 117.49885 * 279.60832 * 16 15 12 26 26 C 1.52998 * 117.50406 * 210.94539 * 16 15 12 27 27 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 300.00136 * 1 2 3 29 29 H 1.08993 * 109.47125 * 59.99802 * 1 2 3 30 30 H 1.07999 * 120.03115 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97058 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.94122 * 180.29754 * 6 5 4 33 33 H 1.07999 * 119.97769 * 179.72409 * 7 6 5 34 34 H 1.09003 * 109.47252 * 20.00094 * 9 8 7 35 35 H 1.09002 * 109.46790 * 140.00093 * 9 8 7 36 36 H 1.09001 * 109.47378 * 89.99584 * 11 10 9 37 37 H 1.09001 * 109.47143 * 209.99543 * 11 10 9 38 38 H 1.09000 * 109.47175 * 329.99513 * 11 10 9 39 39 H 1.08999 * 109.47011 * 294.00725 * 15 12 10 40 40 H 1.09000 * 109.46924 * 54.01228 * 15 12 10 41 41 H 0.96994 * 120.00035 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.49950 * 359.97438 * 25 16 15 43 43 H 1.09010 * 117.49927 * 145.02206 * 25 16 15 44 44 H 1.08995 * 117.50323 * 214.98305 * 26 16 15 45 45 H 1.09002 * 117.49368 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6048 -0.0011 6 6 3.3021 3.6757 0.0048 7 6 4.0561 2.5171 -0.0004 8 6 3.4312 1.2847 0.0001 9 6 4.2538 0.0221 0.0012 10 7 4.3199 -0.5189 -1.3587 11 6 3.2477 -1.3847 -1.8555 12 16 5.6067 -0.1515 -2.3342 13 8 5.0927 -0.2741 -3.6533 14 8 6.0735 1.0975 -1.8430 15 6 6.8172 -1.4602 -1.9986 16 6 8.0024 -1.3162 -2.9554 17 6 8.8272 -0.0666 -2.7850 18 1 8.5886 0.8198 -3.3540 19 6 9.8867 -0.0549 -1.9028 20 7 10.6701 0.9991 -1.8297 21 14 10.2095 -1.5360 -0.8112 22 1 11.1716 -2.4459 -1.4833 23 1 10.7788 -1.0822 0.4831 24 1 8.9349 -2.2571 -0.5658 25 6 7.8357 -1.8647 -4.3740 26 6 8.7337 -2.5940 -3.3716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2129 2.3204 -0.0014 31 1 1.3341 4.5114 -0.0019 32 1 3.7924 4.6380 0.0092 33 1 5.1346 2.5751 -0.0003 34 1 5.2611 0.2450 0.3529 35 1 3.7922 -0.7116 0.6620 36 1 2.4794 -0.7752 -2.3311 37 1 3.6555 -2.0874 -2.5823 38 1 2.8106 -1.9359 -1.0230 39 1 7.1683 -1.3753 -0.9702 40 1 6.3493 -2.4338 -2.1437 41 1 11.4152 1.0074 -1.2088 42 1 6.8818 -2.3284 -4.6255 43 1 8.3230 -1.3218 -5.1840 44 1 9.8113 -2.5308 -3.5225 45 1 8.3707 -3.5373 -2.9634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346441988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:01 Heat of formation + Delta-G solvation = -45.317639 kcal Electronic energy + Delta-G solvation = -28684.049843 eV Core-core repulsion = 24795.635057 eV Total energy + Delta-G solvation = -3888.414786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27089 -37.49126 -37.11093 -36.31920 -36.00154 -35.03611 -32.15175 -31.58237 -30.05102 -28.47613 -27.76318 -26.87229 -25.54572 -24.51320 -22.07389 -21.70643 -21.42348 -19.40014 -18.37778 -17.97478 -17.03487 -16.66299 -16.15580 -16.06008 -15.86163 -15.51910 -15.18104 -14.88672 -14.39856 -14.14045 -13.91200 -13.81047 -13.71645 -12.98007 -12.81466 -12.69542 -12.60468 -12.50666 -12.30932 -12.16529 -11.82025 -11.41675 -11.35629 -11.21088 -11.16803 -11.07302 -10.96418 -10.90123 -10.83886 -10.63808 -10.35745 -10.06973 -9.71985 -9.14565 -8.93100 -8.80605 -8.65022 -8.39703 -8.13691 -6.15925 -4.23068 0.92000 1.38757 1.50549 3.19160 3.22960 3.31473 3.32926 3.36325 3.87020 4.35976 4.54505 4.71157 4.76478 4.80619 4.86679 4.93454 4.95156 4.97997 5.08985 5.16638 5.24155 5.36978 5.38718 5.48319 5.58303 5.62425 5.69827 5.76078 5.92750 5.94076 6.01523 6.03874 6.06122 6.19078 6.22818 6.35155 6.43838 6.51257 6.66222 6.68157 6.82356 6.88522 6.91752 7.07324 7.35003 7.60957 8.38253 8.89610 9.45447 10.95523 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.004041 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.617652 B = 6927.082107 C = 7621.116759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.139 3.861 4 C -0.219 4.219 5 C -0.081 4.081 6 C -0.160 4.160 7 C -0.052 4.052 8 C -0.138 4.138 9 C 0.174 3.826 10 N -1.007 6.007 11 C 0.105 3.895 12 S 2.612 3.388 13 O -0.966 6.966 14 O -0.934 6.934 15 C -0.578 4.578 16 C 0.002 3.998 17 C -0.508 4.508 18 H 0.087 0.913 19 C 0.090 3.910 20 N -0.883 5.883 21 Si 0.872 3.128 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.257 1.257 25 C -0.177 4.177 26 C -0.186 4.186 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.267 0.733 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.694 -3.281 6.540 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.094 3.906 4 C -0.238 4.238 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.070 4.070 8 C -0.141 4.141 9 C 0.049 3.951 10 N -0.843 5.843 11 C -0.040 4.040 12 S 2.708 3.292 13 O -0.956 6.956 14 O -0.924 6.924 15 C -0.710 4.710 16 C -0.001 4.001 17 C -0.544 4.544 18 H 0.105 0.895 19 C -0.115 4.115 20 N -0.518 5.518 21 Si 0.700 3.300 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.181 1.181 25 C -0.215 4.215 26 C -0.224 4.224 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.437 -2.666 6.063 20.534 hybrid contribution 0.112 -1.190 0.989 1.551 sum -19.325 -3.856 7.052 20.929 Atomic orbital electron populations 1.23013 0.78966 1.03653 1.01146 1.86091 1.20794 1.26928 1.88653 1.18814 0.91652 0.84063 0.96112 1.21131 0.99609 0.92493 1.10567 1.20935 0.94777 0.96773 0.97488 1.21126 0.93749 0.98767 1.04199 1.21310 1.01441 0.90671 0.93621 1.19652 0.90703 0.96640 1.07068 1.19952 0.99892 0.91937 0.83328 1.57930 1.36932 1.63258 1.26182 1.21308 0.90378 0.93270 0.99092 1.05165 0.73629 0.76777 0.73628 1.93498 1.78067 1.87557 1.36478 1.93551 1.80613 1.38163 1.80099 1.30364 1.13944 1.16490 1.10159 1.18866 0.94238 0.95549 0.91452 1.20333 1.12794 0.95592 1.25719 0.89533 1.24932 0.94941 0.95720 0.95922 1.69896 1.16337 1.29295 1.36283 0.86949 0.79435 0.83478 0.80173 1.20143 1.21676 1.18086 1.23021 1.00123 1.04325 0.93994 1.22987 0.98700 0.95355 1.05402 0.88437 0.92939 0.92814 0.85836 0.86119 0.85742 0.83607 0.89077 0.89657 0.93140 0.91849 0.91208 0.85644 0.87771 0.92314 0.90074 0.88645 0.88925 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.52 8.08 -19.43 -0.16 -3.67 16 3 C 0.14 1.83 6.66 -39.22 -0.26 1.57 16 4 C -0.22 -2.54 9.04 -39.43 -0.36 -2.90 16 5 C -0.08 -0.95 10.04 -39.60 -0.40 -1.34 16 6 C -0.16 -2.12 10.04 -39.56 -0.40 -2.52 16 7 C -0.05 -0.79 9.12 -39.60 -0.36 -1.15 16 8 C -0.14 -2.04 5.47 -104.47 -0.57 -2.62 16 9 C 0.17 2.49 5.09 -5.19 -0.03 2.46 16 10 N -1.01 -15.84 3.10 -123.05 -0.38 -16.23 16 11 C 0.11 1.38 9.01 59.85 0.54 1.92 16 12 S 2.61 52.64 5.06 -107.50 -0.54 52.10 16 13 O -0.97 -21.34 17.09 -57.54 -0.98 -22.32 16 14 O -0.93 -21.59 15.45 -57.54 -0.89 -22.48 16 15 C -0.58 -11.47 5.65 37.16 0.21 -11.26 16 16 C 0.00 0.04 0.79 -155.66 -0.12 -0.08 16 17 C -0.51 -14.15 8.77 -34.44 -0.30 -14.46 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 20 N -0.88 -26.58 13.96 55.43 0.77 -25.81 16 21 Si 0.87 20.93 24.96 -169.99 -4.24 16.68 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -5.66 5.68 56.52 0.32 -5.34 16 25 C -0.18 -3.71 9.96 -26.69 -0.27 -3.98 16 26 C -0.19 -3.89 7.67 -26.69 -0.20 -4.09 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 2.38 7.40 -52.49 -0.39 1.99 16 34 H 0.09 1.29 7.47 -51.93 -0.39 0.90 16 35 H 0.09 1.01 7.68 -51.93 -0.40 0.61 16 36 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 37 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 38 H 0.07 0.74 7.63 -51.93 -0.40 0.34 16 39 H 0.13 2.44 6.53 -51.92 -0.34 2.10 16 40 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 44 H 0.09 2.01 7.34 -51.93 -0.38 1.63 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -34.72 374.87 -9.24 -43.96 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.84 Total: 6.94 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: -1.62 Total: -34.82 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.39 Total: -42.03 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.03 Total: -48.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.24 Total: 16.68 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.54 Total: 52.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.72 -9.24 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.360 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds