Wall clock time and date at job start Tue Mar 31 2020 23:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35903 * 117.00163 * 2 1 4 4 C 1.38754 * 120.05198 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94072 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.05325 * 359.71868 * 5 4 3 7 7 C 1.38240 * 120.11341 * 0.55921 * 6 5 4 8 8 C 1.38175 * 120.05270 * 359.44218 * 7 6 5 9 9 C 1.50697 * 120.02472 * 180.29935 * 8 7 6 10 10 N 1.46501 * 109.47351 * 259.99969 * 9 8 7 11 11 C 1.46498 * 119.99941 * 275.00450 * 10 9 8 12 12 S 1.65597 * 119.99872 * 94.99977 * 10 9 8 13 13 O 1.42102 * 104.27974 * 206.07271 * 12 10 9 14 14 O 1.42100 * 104.27715 * 333.93218 * 12 10 9 15 15 C 1.81404 * 104.44763 * 90.00305 * 12 10 9 16 16 C 1.52998 * 109.47213 * 174.01076 * 15 12 10 17 17 C 1.50701 * 115.54820 * 65.27441 * 16 15 12 18 18 H 1.08000 * 120.00264 * 268.54324 * 17 16 15 19 19 C 1.37880 * 119.99922 * 88.54958 * 17 16 15 20 20 N 1.31519 * 120.00196 * 174.69783 * 19 17 16 21 21 Si 1.86801 * 119.99885 * 354.69604 * 19 17 16 22 22 H 1.48504 * 109.46724 * 92.55401 * 21 19 17 23 23 H 1.48496 * 109.47049 * 212.55399 * 21 19 17 24 24 H 1.48495 * 109.46914 * 332.55606 * 21 19 17 25 25 C 1.53000 * 117.49885 * 279.60832 * 16 15 12 26 26 C 1.52998 * 117.50406 * 210.94539 * 16 15 12 27 27 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 300.00136 * 1 2 3 29 29 H 1.08993 * 109.47125 * 59.99802 * 1 2 3 30 30 H 1.07999 * 120.03115 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97058 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.94122 * 180.29754 * 6 5 4 33 33 H 1.07999 * 119.97769 * 179.72409 * 7 6 5 34 34 H 1.09003 * 109.47252 * 20.00094 * 9 8 7 35 35 H 1.09002 * 109.46790 * 140.00093 * 9 8 7 36 36 H 1.09001 * 109.47378 * 89.99584 * 11 10 9 37 37 H 1.09001 * 109.47143 * 209.99543 * 11 10 9 38 38 H 1.09000 * 109.47175 * 329.99513 * 11 10 9 39 39 H 1.08999 * 109.47011 * 294.00725 * 15 12 10 40 40 H 1.09000 * 109.46924 * 54.01228 * 15 12 10 41 41 H 0.96994 * 120.00035 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.49950 * 359.97438 * 25 16 15 43 43 H 1.09010 * 117.49927 * 145.02206 * 25 16 15 44 44 H 1.08995 * 117.50323 * 214.98305 * 26 16 15 45 45 H 1.09002 * 117.49368 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6048 -0.0011 6 6 3.3021 3.6757 0.0048 7 6 4.0561 2.5171 -0.0004 8 6 3.4312 1.2847 0.0001 9 6 4.2538 0.0221 0.0012 10 7 4.3199 -0.5189 -1.3587 11 6 3.2477 -1.3847 -1.8555 12 16 5.6067 -0.1515 -2.3342 13 8 5.0927 -0.2741 -3.6533 14 8 6.0735 1.0975 -1.8430 15 6 6.8172 -1.4602 -1.9986 16 6 8.0024 -1.3162 -2.9554 17 6 8.8272 -0.0666 -2.7850 18 1 8.5886 0.8198 -3.3540 19 6 9.8867 -0.0549 -1.9028 20 7 10.6701 0.9991 -1.8297 21 14 10.2095 -1.5360 -0.8112 22 1 11.1716 -2.4459 -1.4833 23 1 10.7788 -1.0822 0.4831 24 1 8.9349 -2.2571 -0.5658 25 6 7.8357 -1.8647 -4.3740 26 6 8.7337 -2.5940 -3.3716 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2129 2.3204 -0.0014 31 1 1.3341 4.5114 -0.0019 32 1 3.7924 4.6380 0.0092 33 1 5.1346 2.5751 -0.0003 34 1 5.2611 0.2450 0.3529 35 1 3.7922 -0.7116 0.6620 36 1 2.4794 -0.7752 -2.3311 37 1 3.6555 -2.0874 -2.5823 38 1 2.8106 -1.9359 -1.0230 39 1 7.1683 -1.3753 -0.9702 40 1 6.3493 -2.4338 -2.1437 41 1 11.4152 1.0074 -1.2088 42 1 6.8818 -2.3284 -4.6255 43 1 8.3230 -1.3218 -5.1840 44 1 9.8113 -2.5308 -3.5225 45 1 8.3707 -3.5373 -2.9634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346441988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:00 Heat of formation + Delta-G solvation = -69.816020 kcal Electronic energy + Delta-G solvation = -28685.112172 eV Core-core repulsion = 24795.635057 eV Total energy + Delta-G solvation = -3889.477116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17374 -38.85909 -38.39147 -37.95604 -37.15969 -36.67015 -34.29023 -32.59706 -30.98586 -30.08590 -28.55329 -27.75269 -27.61502 -25.65589 -23.35992 -23.00503 -22.45707 -21.22323 -19.80884 -19.00996 -18.54549 -18.33397 -17.34445 -17.19198 -16.96081 -16.83399 -16.56680 -16.35365 -15.56490 -15.46174 -15.36628 -14.90594 -14.81227 -14.63320 -14.52112 -13.96190 -13.81701 -13.78217 -13.47544 -13.20959 -13.12294 -12.91838 -12.78509 -12.68048 -12.66389 -12.38818 -12.34509 -12.14847 -12.05770 -11.92625 -11.81041 -11.73068 -11.67934 -10.97192 -10.72879 -10.36459 -9.95130 -9.77864 -9.08809 -8.31729 -6.44719 -0.59692 0.36220 0.51554 1.35589 1.37156 1.50504 1.96990 2.35930 2.42665 2.83750 2.94756 3.01697 3.17465 3.36395 3.70613 3.81811 3.85744 4.02614 4.13362 4.17953 4.31832 4.33126 4.36625 4.43964 4.47771 4.51358 4.59230 4.60665 4.63097 4.74386 4.81306 4.84001 4.90994 4.98837 5.02176 5.06727 5.15767 5.20440 5.37474 5.43480 5.52010 5.61640 5.65897 5.69909 5.89524 6.20120 6.49965 6.66165 7.27750 8.84606 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.004041 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.617652 B = 6927.082107 C = 7621.116759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.138 3.862 4 C -0.218 4.218 5 C -0.078 4.078 6 C -0.177 4.177 7 C -0.081 4.081 8 C -0.162 4.162 9 C 0.170 3.830 10 N -0.997 5.997 11 C 0.097 3.903 12 S 2.612 3.388 13 O -0.993 6.993 14 O -0.981 6.981 15 C -0.572 4.572 16 C -0.033 4.033 17 C -0.511 4.511 18 H 0.027 0.973 19 C 0.028 3.972 20 N -0.941 5.941 21 Si 0.932 3.068 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.216 1.216 25 C -0.175 4.175 26 C -0.168 4.168 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.268 0.732 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.909 -6.924 7.864 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.092 3.908 4 C -0.237 4.237 5 C -0.096 4.096 6 C -0.195 4.195 7 C -0.100 4.100 8 C -0.164 4.164 9 C 0.045 3.955 10 N -0.835 5.835 11 C -0.047 4.047 12 S 2.709 3.291 13 O -0.984 6.984 14 O -0.971 6.971 15 C -0.704 4.704 16 C -0.035 4.035 17 C -0.549 4.549 18 H 0.045 0.955 19 C -0.171 4.171 20 N -0.579 5.579 21 Si 0.754 3.246 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.138 1.138 25 C -0.212 4.212 26 C -0.206 4.206 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.134 0.866 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.691 -6.315 7.358 24.675 hybrid contribution 0.979 0.039 0.497 1.099 sum -21.711 -6.276 7.855 23.926 Atomic orbital electron populations 1.23343 0.76733 1.05613 1.02014 1.86062 1.23011 1.25897 1.88269 1.18861 0.91166 0.85368 0.95402 1.21534 1.01209 0.91833 1.09094 1.21307 0.94058 0.98342 0.95916 1.21327 0.94945 0.98473 1.04750 1.21256 1.00465 0.92352 0.95886 1.19728 0.91984 0.96294 1.08414 1.20140 0.99798 0.92757 0.82785 1.57536 1.36110 1.63693 1.26181 1.21582 0.89424 0.93080 1.00617 1.04829 0.74324 0.76509 0.73399 1.93448 1.78673 1.87887 1.38342 1.93504 1.81793 1.41103 1.80679 1.30211 1.12375 1.18557 1.09293 1.18793 0.95821 0.94822 0.94077 1.20418 1.13675 0.96054 1.24719 0.95472 1.25920 0.94490 0.99162 0.97532 1.70067 1.17581 1.32370 1.37902 0.85991 0.81247 0.79747 0.77594 1.18742 1.22049 1.13818 1.23097 1.01602 1.03905 0.92616 1.23094 0.98073 0.95570 1.03891 0.86078 0.91628 0.92299 0.82672 0.82988 0.85000 0.86446 0.90143 0.86600 0.93844 0.90786 0.87969 0.85076 0.82895 0.92263 0.87066 0.90254 0.90170 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -6.19 8.08 -92.46 -0.75 -6.94 16 3 C 0.14 3.38 6.66 22.50 0.15 3.53 16 4 C -0.22 -4.52 9.04 22.37 0.20 -4.32 16 5 C -0.08 -1.69 10.04 22.26 0.22 -1.47 16 6 C -0.18 -4.81 10.04 22.28 0.22 -4.59 16 7 C -0.08 -2.63 9.12 22.26 0.20 -2.42 16 8 C -0.16 -4.79 5.47 -19.77 -0.11 -4.90 16 9 C 0.17 4.73 5.09 85.63 0.44 5.17 16 10 N -1.00 -29.95 3.10 -543.22 -1.68 -31.64 16 11 C 0.10 2.26 9.01 127.77 1.15 3.41 16 12 S 2.61 105.73 5.06 -56.49 -0.29 105.44 16 13 O -0.99 -44.02 17.09 -127.65 -2.18 -46.20 16 14 O -0.98 -48.31 15.45 -127.65 -1.97 -50.28 16 15 C -0.57 -21.27 5.65 71.98 0.41 -20.86 16 16 C -0.03 -1.48 0.79 -52.93 -0.04 -1.52 16 17 C -0.51 -29.77 8.77 25.60 0.22 -29.55 16 18 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 19 C 0.03 1.64 5.47 84.65 0.46 2.10 16 20 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 21 Si 0.93 42.42 24.96 68.60 1.71 44.13 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.22 -8.36 5.68 99.48 0.57 -7.79 16 25 C -0.17 -7.03 9.96 30.62 0.30 -6.73 16 26 C -0.17 -6.44 7.67 30.62 0.23 -6.21 16 27 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.06 0.58 7.66 -2.39 -0.02 0.57 16 30 H 0.16 2.14 6.30 -2.91 -0.02 2.12 16 31 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.12 4.35 7.40 -2.91 -0.02 4.33 16 34 H 0.08 2.36 7.47 -2.39 -0.02 2.34 16 35 H 0.12 2.45 7.68 -2.39 -0.02 2.43 16 36 H 0.04 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.07 1.56 7.79 -2.39 -0.02 1.54 16 38 H 0.10 1.71 7.63 -2.39 -0.02 1.69 16 39 H 0.13 4.73 6.53 -2.39 -0.02 4.71 16 40 H 0.15 4.13 8.09 -2.39 -0.02 4.11 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 44 H 0.08 3.28 7.34 -2.39 -0.02 3.27 16 45 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -82.15 374.87 1.17 -80.98 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.84 Total: 31.18 kcal Atomic # 6 Polarization: -72.25 SS G_CDS: 5.19 Total: -67.06 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -1.38 Total: -91.25 kcal Atomic # 8 Polarization: -98.52 SS G_CDS: -4.90 Total: -103.42 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.71 Total: 44.13 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -0.29 Total: 105.44 kcal Total: -82.15 1.17 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.165 kcal (2) G-P(sol) polarization free energy of solvation -82.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds