Wall clock time and date at job start Tue Mar 31 2020 23:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00218 * 2 1 4 4 C 1.38731 * 120.05723 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.94938 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.05347 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94335 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47038 * 89.99913 * 7 6 5 9 9 N 1.46504 * 109.46930 * 179.97438 * 8 7 6 10 10 S 1.65595 * 119.99572 * 165.00138 * 9 8 7 11 11 O 1.42107 * 104.27541 * 181.07345 * 10 9 8 12 12 O 1.42100 * 104.27863 * 308.92712 * 10 9 8 13 13 C 1.81396 * 104.45072 * 65.00219 * 10 9 8 14 14 C 1.53006 * 109.47182 * 173.81140 * 13 10 9 15 15 C 1.50700 * 115.54799 * 65.19214 * 14 13 10 16 16 H 1.07998 * 120.00035 * 264.78236 * 15 14 13 17 17 C 1.37878 * 120.00021 * 84.78620 * 15 14 13 18 18 N 1.31517 * 119.99637 * 352.22903 * 17 15 14 19 19 Si 1.86799 * 120.00342 * 172.22168 * 17 15 14 20 20 H 1.48502 * 109.46637 * 60.00239 * 19 17 15 21 21 H 1.48494 * 109.47404 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47108 * 300.00389 * 19 17 15 23 23 C 1.53000 * 117.50020 * 279.52659 * 14 13 10 24 24 C 1.52999 * 117.49882 * 210.86629 * 14 13 10 25 25 C 1.38265 * 120.10905 * 0.24744 * 6 5 4 26 26 C 1.38144 * 120.05675 * 359.45970 * 25 6 5 27 27 H 1.09003 * 109.47602 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47034 * 300.00397 * 1 2 3 29 29 H 1.09006 * 109.46896 * 59.99675 * 1 2 3 30 30 H 1.08010 * 120.02777 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97896 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46694 * 209.99773 * 7 6 5 33 33 H 1.08996 * 109.47208 * 329.99781 * 7 6 5 34 34 H 1.08998 * 109.47005 * 300.00207 * 8 7 6 35 35 H 1.09005 * 109.46714 * 59.99656 * 8 7 6 36 36 H 0.96999 * 119.99929 * 344.99894 * 9 8 7 37 37 H 1.09001 * 109.47131 * 293.80571 * 13 10 9 38 38 H 1.09000 * 109.47574 * 53.81111 * 13 10 9 39 39 H 0.97008 * 119.99577 * 185.02574 * 18 17 15 40 40 H 1.09010 * 117.49546 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.50129 * 145.01810 * 23 14 13 42 42 H 1.09003 * 117.49580 * 214.97789 * 24 14 13 43 43 H 1.09004 * 117.49961 * 359.97034 * 24 14 13 44 44 H 1.07999 * 119.97417 * 179.70226 * 25 6 5 45 45 H 1.07997 * 120.02886 * 180.24831 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 6 4.2184 5.4738 -1.4394 9 7 4.8831 6.7793 -1.4382 10 16 5.5901 7.3496 -2.8228 11 8 6.1439 8.6021 -2.4433 12 8 6.4218 6.2823 -3.2568 13 6 4.2073 7.5872 -3.9725 14 6 4.7151 8.2614 -5.2487 15 6 5.6816 7.4497 -6.0721 16 1 6.7455 7.5873 -5.9473 17 6 5.2077 6.5314 -6.9849 18 7 3.9232 6.2525 -7.0306 19 14 6.3898 5.6836 -8.1567 20 1 7.4009 4.9253 -7.3770 21 1 5.6359 4.7487 -9.0300 22 1 7.0725 6.7024 -8.9941 23 6 4.9161 9.7777 -5.2146 24 6 3.7453 9.1779 -5.9973 25 6 1.9212 3.6047 0.0068 26 6 1.2916 2.3751 0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3798 0.0014 31 1 5.1346 2.5749 0.0019 32 1 3.3581 5.7458 0.5169 33 1 4.9440 4.9377 0.5169 34 1 4.8465 4.7463 -1.9535 35 1 3.2606 5.5544 -1.9535 36 1 4.9089 7.3097 -0.6265 37 1 3.7715 6.6196 -4.2216 38 1 3.4503 8.2172 -3.5053 39 1 3.5992 5.5546 -7.6214 40 1 4.6862 10.2951 -4.2831 41 1 5.7472 10.1883 -5.7881 42 1 3.8067 9.1941 -7.0855 43 1 2.7454 9.3002 -5.5810 44 1 1.3343 4.5113 0.0120 45 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346447128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:14 Heat of formation + Delta-G solvation = -68.558652 kcal Electronic energy + Delta-G solvation = -27000.601469 eV Core-core repulsion = 23111.178877 eV Total energy + Delta-G solvation = -3889.422592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33057 -38.09093 -36.74215 -36.24843 -35.55621 -35.00783 -32.02964 -31.87725 -31.21418 -28.34403 -28.14259 -26.88187 -25.43638 -23.29759 -22.78210 -21.20604 -21.08735 -19.68510 -18.64475 -18.34338 -16.92850 -16.53720 -16.44610 -16.00832 -15.88450 -15.33180 -15.14238 -14.72546 -14.61317 -14.41445 -14.22330 -13.83288 -13.73430 -13.44248 -13.12258 -12.98577 -12.30873 -12.22149 -11.94328 -11.85365 -11.83230 -11.56593 -11.25083 -11.24927 -11.10818 -11.01614 -10.93144 -10.89157 -10.87214 -10.58157 -10.44597 -10.10363 -9.71097 -9.21665 -9.12447 -8.95123 -8.54815 -8.25646 -8.07389 -6.12624 -4.23138 1.07567 1.19068 1.26831 3.04607 3.33978 3.35896 3.42663 3.46335 3.60629 4.38860 4.54779 4.57698 4.67873 4.75706 4.80890 4.86219 4.98184 5.04270 5.09701 5.16211 5.16917 5.21648 5.23415 5.34757 5.47555 5.58108 5.59255 5.80184 5.88082 5.95392 5.99950 6.10954 6.16002 6.22844 6.29655 6.38473 6.50747 6.59442 6.62375 6.72935 6.99273 7.17904 7.23806 7.31426 7.39880 7.81756 8.21777 8.82060 9.48005 10.94992 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003013 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.546326 B = 9289.812337 C =10400.497860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.149 4.149 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.081 4.081 8 C 0.120 3.880 9 N -1.135 6.135 10 S 2.608 3.392 11 O -0.975 6.975 12 O -0.950 6.950 13 C -0.554 4.554 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.208 4.208 24 C -0.142 4.142 25 C -0.074 4.074 26 C -0.207 4.207 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -7.650 16.223 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.006 4.006 9 N -0.891 5.891 10 S 2.705 3.295 11 O -0.966 6.966 12 O -0.939 6.939 13 C -0.687 4.687 14 C 0.042 3.958 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.092 4.092 26 C -0.225 4.225 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.597 -7.914 15.815 19.247 hybrid contribution -0.676 -0.276 -0.473 0.870 sum -8.272 -8.190 15.342 19.259 Atomic orbital electron populations 1.23048 0.78457 1.03857 1.01403 1.86061 1.21349 1.27093 1.88811 1.19058 0.92432 0.84113 0.96802 1.20432 0.91337 0.98740 1.06262 1.20950 1.00161 0.90932 0.97044 1.19686 0.93531 0.94947 1.03623 1.20712 1.01069 0.93474 0.96736 1.21255 0.97640 0.84495 0.97259 1.55993 1.75963 1.28278 1.28901 1.05111 0.76879 0.73847 0.73699 1.93503 1.76762 1.44537 1.81785 1.93535 1.63826 1.55471 1.81118 1.29977 1.16224 1.10581 1.11944 1.18265 0.98932 0.86953 0.91662 1.20493 0.92071 1.22106 1.20753 0.91387 1.24945 0.95066 0.95843 0.96381 1.69970 1.13025 1.29968 1.38050 0.86657 0.81327 0.79487 0.80817 1.19425 1.21130 1.19898 1.23199 1.01567 0.98206 1.01582 1.22552 0.92242 1.04706 0.98600 1.20867 0.93942 0.97136 0.97258 1.21210 0.99975 0.92355 1.08985 0.88333 0.92732 0.92524 0.85177 0.84968 0.90426 0.90141 0.89937 0.91752 0.75921 0.84891 0.88299 0.92693 0.90687 0.89537 0.89610 0.91566 0.85583 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.37 10.50 -19.42 -0.20 -3.58 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.64 9.99 -39.44 -0.39 -2.03 16 5 C -0.07 -0.78 9.69 -39.61 -0.38 -1.17 16 6 C -0.12 -1.25 5.14 -104.60 -0.54 -1.78 16 7 C -0.08 -0.82 5.48 -27.88 -0.15 -0.97 16 8 C 0.12 1.57 6.11 -4.04 -0.02 1.55 16 9 N -1.13 -16.35 5.89 -10.61 -0.06 -16.41 16 10 S 2.61 52.20 5.19 -107.50 -0.56 51.64 16 11 O -0.98 -21.26 18.08 -57.54 -1.04 -22.31 16 12 O -0.95 -22.61 17.17 -57.54 -0.99 -23.60 16 13 C -0.55 -11.55 5.93 37.16 0.22 -11.33 16 14 C 0.04 1.08 1.32 -155.66 -0.21 0.87 16 15 C -0.52 -14.19 8.18 -34.44 -0.28 -14.47 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 17 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 18 N -0.87 -24.07 12.98 55.43 0.72 -23.35 16 19 Si 0.89 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.21 -4.58 9.96 -26.69 -0.27 -4.85 16 24 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 25 C -0.07 -0.75 9.69 -39.61 -0.38 -1.13 16 26 C -0.21 -2.08 9.04 -39.43 -0.36 -2.43 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.08 1.21 7.70 -51.93 -0.40 0.81 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.41 4.78 8.62 -34.47 -0.30 4.49 16 37 H 0.13 2.88 8.14 -51.92 -0.42 2.46 16 38 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 39 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 40 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.09 392.08 -10.49 -44.58 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.86 Total: 7.49 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -2.39 Total: -36.81 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.66 Total: -39.76 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.23 Total: -49.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.56 Total: 51.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.09 -10.49 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346447128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.979 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds