Wall clock time and date at job start Tue Mar 31 2020 23:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00218 * 2 1 4 4 C 1.38731 * 120.05723 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.94938 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.05347 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94335 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47038 * 89.99913 * 7 6 5 9 9 N 1.46504 * 109.46930 * 179.97438 * 8 7 6 10 10 S 1.65595 * 119.99572 * 165.00138 * 9 8 7 11 11 O 1.42107 * 104.27541 * 181.07345 * 10 9 8 12 12 O 1.42100 * 104.27863 * 308.92712 * 10 9 8 13 13 C 1.81396 * 104.45072 * 65.00219 * 10 9 8 14 14 C 1.53006 * 109.47182 * 173.81140 * 13 10 9 15 15 C 1.50700 * 115.54799 * 65.19214 * 14 13 10 16 16 H 1.07998 * 120.00035 * 264.78236 * 15 14 13 17 17 C 1.37878 * 120.00021 * 84.78620 * 15 14 13 18 18 N 1.31517 * 119.99637 * 352.22903 * 17 15 14 19 19 Si 1.86799 * 120.00342 * 172.22168 * 17 15 14 20 20 H 1.48502 * 109.46637 * 60.00239 * 19 17 15 21 21 H 1.48494 * 109.47404 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47108 * 300.00389 * 19 17 15 23 23 C 1.53000 * 117.50020 * 279.52659 * 14 13 10 24 24 C 1.52999 * 117.49882 * 210.86629 * 14 13 10 25 25 C 1.38265 * 120.10905 * 0.24744 * 6 5 4 26 26 C 1.38144 * 120.05675 * 359.45970 * 25 6 5 27 27 H 1.09003 * 109.47602 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47034 * 300.00397 * 1 2 3 29 29 H 1.09006 * 109.46896 * 59.99675 * 1 2 3 30 30 H 1.08010 * 120.02777 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97896 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46694 * 209.99773 * 7 6 5 33 33 H 1.08996 * 109.47208 * 329.99781 * 7 6 5 34 34 H 1.08998 * 109.47005 * 300.00207 * 8 7 6 35 35 H 1.09005 * 109.46714 * 59.99656 * 8 7 6 36 36 H 0.96999 * 119.99929 * 344.99894 * 9 8 7 37 37 H 1.09001 * 109.47131 * 293.80571 * 13 10 9 38 38 H 1.09000 * 109.47574 * 53.81111 * 13 10 9 39 39 H 0.97008 * 119.99577 * 185.02574 * 18 17 15 40 40 H 1.09010 * 117.49546 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.50129 * 145.01810 * 23 14 13 42 42 H 1.09003 * 117.49580 * 214.97789 * 24 14 13 43 43 H 1.09004 * 117.49961 * 359.97034 * 24 14 13 44 44 H 1.07999 * 119.97417 * 179.70226 * 25 6 5 45 45 H 1.07997 * 120.02886 * 180.24831 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 6 4.2184 5.4738 -1.4394 9 7 4.8831 6.7793 -1.4382 10 16 5.5901 7.3496 -2.8228 11 8 6.1439 8.6021 -2.4433 12 8 6.4218 6.2823 -3.2568 13 6 4.2073 7.5872 -3.9725 14 6 4.7151 8.2614 -5.2487 15 6 5.6816 7.4497 -6.0721 16 1 6.7455 7.5873 -5.9473 17 6 5.2077 6.5314 -6.9849 18 7 3.9232 6.2525 -7.0306 19 14 6.3898 5.6836 -8.1567 20 1 7.4009 4.9253 -7.3770 21 1 5.6359 4.7487 -9.0300 22 1 7.0725 6.7024 -8.9941 23 6 4.9161 9.7777 -5.2146 24 6 3.7453 9.1779 -5.9973 25 6 1.9212 3.6047 0.0068 26 6 1.2916 2.3751 0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3798 0.0014 31 1 5.1346 2.5749 0.0019 32 1 3.3581 5.7458 0.5169 33 1 4.9440 4.9377 0.5169 34 1 4.8465 4.7463 -1.9535 35 1 3.2606 5.5544 -1.9535 36 1 4.9089 7.3097 -0.6265 37 1 3.7715 6.6196 -4.2216 38 1 3.4503 8.2172 -3.5053 39 1 3.5992 5.5546 -7.6214 40 1 4.6862 10.2951 -4.2831 41 1 5.7472 10.1883 -5.7881 42 1 3.8067 9.1941 -7.0855 43 1 2.7454 9.3002 -5.5810 44 1 1.3343 4.5113 0.0120 45 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346447128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:13 Heat of formation + Delta-G solvation = -91.194564 kcal Electronic energy + Delta-G solvation = -27001.583036 eV Core-core repulsion = 23111.178877 eV Total energy + Delta-G solvation = -3890.404159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06692 -38.86153 -38.54848 -37.91627 -36.82160 -36.53422 -34.07671 -32.78570 -31.97202 -29.82877 -29.07068 -27.64921 -27.45927 -24.22872 -23.54499 -22.97797 -21.93391 -21.44556 -20.20277 -19.07785 -18.41811 -18.31443 -17.32663 -17.20009 -16.76585 -16.67509 -16.61324 -16.22896 -15.86615 -15.56809 -15.41729 -15.14286 -14.88547 -14.54360 -14.24642 -13.82106 -13.73854 -13.63555 -13.37815 -13.12563 -12.88774 -12.88295 -12.86130 -12.83439 -12.74690 -12.43933 -12.39165 -12.21773 -12.13309 -11.89324 -11.76120 -11.66017 -11.52193 -10.86897 -10.54287 -10.45597 -9.92936 -9.84560 -9.03334 -8.18906 -6.33182 -0.47925 0.41581 0.45140 1.39240 1.41244 1.48196 2.07759 2.40156 2.40710 2.79179 2.97423 3.08756 3.40018 3.49692 3.86406 3.86995 3.99051 4.05998 4.12345 4.17821 4.33062 4.35478 4.39744 4.47608 4.52491 4.55551 4.60827 4.63879 4.71058 4.72934 4.80648 4.87079 4.97135 4.99323 5.16184 5.22782 5.24376 5.34272 5.42189 5.49098 5.60248 5.72251 5.72408 5.85742 6.23266 6.25291 6.46968 6.72633 7.38964 8.87774 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003013 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.546326 B = 9289.812337 C =10400.497860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.107 3.893 4 C -0.168 4.168 5 C -0.084 4.084 6 C -0.128 4.128 7 C -0.072 4.072 8 C 0.113 3.887 9 N -1.113 6.113 10 S 2.624 3.376 11 O -0.995 6.995 12 O -0.995 6.995 13 C -0.552 4.552 14 C 0.011 3.989 15 C -0.537 4.537 16 H 0.048 0.952 17 C 0.044 3.956 18 N -0.891 5.891 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.196 4.196 24 C -0.139 4.139 25 C -0.077 4.077 26 C -0.212 4.212 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.425 0.575 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.148 0.852 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 -7.195 17.542 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.186 4.186 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.110 4.110 8 C -0.014 4.014 9 N -0.875 5.875 10 S 2.722 3.278 11 O -0.985 6.985 12 O -0.985 6.985 13 C -0.685 4.685 14 C 0.009 3.991 15 C -0.574 4.574 16 H 0.066 0.934 17 C -0.159 4.159 18 N -0.527 5.527 19 Si 0.758 3.242 20 H -0.203 1.203 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.233 4.233 24 C -0.178 4.178 25 C -0.095 4.095 26 C -0.230 4.230 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.261 0.739 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.166 0.834 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.187 -7.440 17.135 20.818 hybrid contribution -0.225 -0.452 -0.836 0.977 sum -9.412 -7.892 16.299 20.409 Atomic orbital electron populations 1.23320 0.76584 1.05449 1.02199 1.86034 1.23396 1.27089 1.88788 1.19285 0.92713 0.84823 0.96964 1.20625 0.91881 0.99151 1.06970 1.21145 1.00752 0.91154 0.97121 1.19809 0.94007 0.94969 1.04087 1.20663 1.02036 0.93704 0.94630 1.21445 0.97317 0.83058 0.99532 1.55404 1.75514 1.28840 1.27714 1.04287 0.76536 0.72834 0.74192 1.93465 1.77485 1.45378 1.82195 1.93482 1.65643 1.56911 1.82447 1.29868 1.17268 1.10398 1.10975 1.18397 0.99585 0.87960 0.93170 1.20693 0.91933 1.22951 1.21818 0.93364 1.25497 0.96391 0.96526 0.97507 1.70013 1.13718 1.30388 1.38575 0.85995 0.79820 0.78906 0.79462 1.20281 1.19879 1.19277 1.23250 1.00958 0.96811 1.02329 1.22512 0.93465 1.04287 0.97552 1.21177 0.93919 0.98009 0.96439 1.21487 1.01091 0.92006 1.08419 0.86500 0.91465 0.92098 0.84860 0.84313 0.87874 0.89478 0.92132 0.90729 0.73880 0.86009 0.84644 0.92572 0.88149 0.90037 0.91670 0.89296 0.83429 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.93 10.50 -92.40 -0.97 -7.90 16 3 C 0.11 2.32 6.69 22.51 0.15 2.47 16 4 C -0.17 -3.69 9.99 22.36 0.22 -3.47 16 5 C -0.08 -1.76 9.69 22.25 0.22 -1.54 16 6 C -0.13 -2.51 5.14 -19.85 -0.10 -2.61 16 7 C -0.07 -1.26 5.48 29.85 0.16 -1.10 16 8 C 0.11 2.76 6.11 86.38 0.53 3.29 16 9 N -1.11 -29.83 5.89 -187.47 -1.10 -30.94 16 10 S 2.62 102.88 5.19 -56.49 -0.29 102.59 16 11 O -0.99 -42.11 18.08 -127.65 -2.31 -44.42 16 12 O -1.00 -48.05 17.17 -127.65 -2.19 -50.24 16 13 C -0.55 -22.26 5.93 71.98 0.43 -21.83 16 14 C 0.01 0.53 1.32 -52.93 -0.07 0.46 16 15 C -0.54 -29.82 8.18 25.60 0.21 -29.61 16 16 H 0.05 2.79 7.83 -2.91 -0.02 2.76 16 17 C 0.04 2.41 5.38 84.65 0.46 2.87 16 18 N -0.89 -49.05 12.98 21.45 0.28 -48.77 16 19 Si 0.93 44.24 29.55 68.60 2.03 46.26 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C -0.20 -8.36 9.96 30.62 0.30 -8.05 16 24 C -0.14 -6.18 9.49 30.62 0.29 -5.89 16 25 C -0.08 -1.39 9.69 22.25 0.22 -1.17 16 26 C -0.21 -3.89 9.04 22.37 0.20 -3.69 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 29 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 30 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.10 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.06 1.77 7.70 -2.39 -0.02 1.75 16 35 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.42 8.72 8.62 -96.75 -0.83 7.89 16 37 H 0.12 5.20 8.14 -2.39 -0.02 5.18 16 38 H 0.14 4.32 8.09 -2.39 -0.02 4.30 16 39 H 0.27 13.93 8.32 -92.70 -0.77 13.16 16 40 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 41 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.15 1.97 6.30 -2.91 -0.02 1.95 16 Total: -1.00 -73.54 392.08 -0.08 -73.62 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.16 Total: 28.35 kcal Atomic # 6 Polarization: -72.88 SS G_CDS: 4.33 Total: -68.55 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -0.82 Total: -79.71 kcal Atomic # 8 Polarization: -97.09 SS G_CDS: -5.47 Total: -102.56 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 102.88 SS G_CDS: -0.29 Total: 102.59 kcal Total: -73.54 -0.08 -73.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346447128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds