Wall clock time and date at job start Tue Mar 31 2020 23:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99782 * 2 1 4 4 O 1.20826 * 120.00565 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00082 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47591 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00135 * 270.00443 * 6 5 3 8 8 H 1.08002 * 119.99947 * 202.99172 * 7 6 5 9 9 C 1.38950 * 120.00193 * 22.99158 * 7 6 5 10 10 N 1.31411 * 119.99857 * 351.26122 * 9 7 6 11 11 Si 1.86798 * 120.00165 * 171.26295 * 9 7 6 12 12 H 1.48503 * 109.47320 * 59.99592 * 11 9 7 13 13 H 1.48505 * 109.47332 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47059 * 299.99567 * 11 9 7 15 15 C 1.34782 * 119.99848 * 89.99381 * 6 5 3 16 16 O 1.21290 * 120.00305 * 5.02799 * 15 6 5 17 17 C 1.50702 * 119.99876 * 185.01509 * 15 6 5 18 18 C 1.53001 * 109.47217 * 174.80315 * 17 15 6 19 19 C 1.50699 * 109.47158 * 180.02562 * 18 17 15 20 20 C 1.38295 * 119.98281 * 264.99545 * 19 18 17 21 21 C 1.38215 * 120.12189 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.09968 * 0.02562 * 21 20 19 23 23 C 1.38623 * 119.96779 * 0.02562 * 22 21 20 24 24 O 1.35951 * 120.06120 * 180.02562 * 23 22 21 25 25 C 1.42905 * 117.00588 * 359.97369 * 24 23 22 26 26 C 1.38294 * 119.98322 * 85.00479 * 19 18 17 27 27 F 1.35102 * 120.04978 * 0.26867 * 26 19 18 28 28 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47516 * 300.00473 * 1 2 3 30 30 H 1.09009 * 109.46645 * 60.00276 * 1 2 3 31 31 H 1.08994 * 109.46781 * 59.99427 * 5 3 2 32 32 H 1.09008 * 109.46915 * 300.00102 * 5 3 2 33 33 H 0.97005 * 120.00171 * 185.01424 * 10 9 7 34 34 H 1.09006 * 109.46870 * 54.80939 * 17 15 6 35 35 H 1.08998 * 109.47297 * 294.80856 * 17 15 6 36 36 H 1.08998 * 109.46708 * 60.00164 * 18 17 15 37 37 H 1.09007 * 109.46945 * 300.00783 * 18 17 15 38 38 H 1.08002 * 119.94054 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.95101 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.01882 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.46487 * 59.99986 * 25 24 23 42 42 H 1.08991 * 109.47412 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.46864 * 300.00664 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1765 3.3363 -1.1877 8 1 4.8149 4.2067 -1.2252 9 6 3.5527 2.8821 -2.3432 10 7 2.9176 1.7316 -2.3382 11 14 3.6168 3.9067 -3.9038 12 1 5.0316 4.0992 -4.3119 13 1 2.8807 3.2061 -4.9867 14 1 2.9895 5.2293 -3.6537 15 6 4.1722 3.3268 1.1668 16 8 4.0890 2.7232 2.2155 17 6 4.4889 4.8001 1.1684 18 6 4.5286 5.3116 2.6099 19 6 4.8447 6.7851 2.6115 20 6 6.1502 7.2117 2.7733 21 6 6.4434 8.5624 2.7747 22 6 5.4325 9.4914 2.6149 23 6 4.1223 9.0681 2.4535 24 8 3.1266 9.9802 2.2957 25 6 3.5018 11.3590 2.3067 26 6 3.8290 7.7100 2.4514 27 9 2.5528 7.2937 2.2990 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8909 33 1 2.5447 1.3799 -3.1617 34 1 3.7201 5.3376 0.6133 35 1 5.4584 4.9639 0.6979 36 1 5.2974 4.7741 3.1650 37 1 3.5591 5.1477 3.0804 38 1 6.9421 6.4881 2.8987 39 1 7.4639 8.8925 2.9016 40 1 5.6631 10.5465 2.6158 41 1 4.2054 11.5504 1.4965 42 1 2.6149 11.9780 2.1720 43 1 3.9715 11.6001 3.2604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353262608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:21 Heat of formation + Delta-G solvation = -166.467166 kcal Electronic energy + Delta-G solvation = -29853.835340 eV Core-core repulsion = 25393.953941 eV Total energy + Delta-G solvation = -4459.881400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.54097 -40.05720 -39.41060 -38.40276 -37.64341 -35.46955 -34.53903 -33.36569 -31.52735 -30.31413 -29.64960 -28.22814 -27.43359 -26.26406 -24.96650 -23.65277 -22.55076 -21.10850 -20.06838 -19.17336 -18.06195 -17.07838 -16.98222 -16.88818 -16.51215 -16.15488 -16.10518 -15.42171 -15.15946 -14.95788 -14.83258 -14.59524 -14.39181 -14.23139 -14.14161 -13.61569 -13.03719 -12.71682 -12.66487 -12.55120 -12.37241 -12.09474 -11.88913 -11.78012 -11.56036 -11.41317 -11.24322 -11.17248 -11.05848 -10.99488 -10.70205 -10.52309 -10.43943 -10.38122 -9.77375 -9.49382 -8.97278 -8.78087 -8.48326 -8.21971 -7.93024 -6.42953 -4.05700 1.12461 1.25228 3.02936 3.10489 3.19686 3.20542 3.51038 3.57074 3.77868 4.04124 4.12951 4.29820 4.58920 4.67906 4.86514 4.92370 4.93320 5.03929 5.15917 5.20049 5.25410 5.34933 5.69921 5.74414 5.76981 5.82111 5.94022 5.99323 6.02083 6.12121 6.21508 6.27479 6.34213 6.40271 6.57388 6.59948 6.71458 6.72818 6.94385 7.22176 7.32843 7.53192 7.67389 8.26425 8.99139 9.18306 9.37866 9.77687 10.58590 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.003309 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.940575 B = 8459.046196 C = 9068.771161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.490 3.510 4 O -0.514 6.514 5 C 0.154 3.846 6 N -0.434 5.434 7 C -0.325 4.325 8 H 0.102 0.898 9 C 0.043 3.957 10 N -0.885 5.885 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.473 3.527 16 O -0.604 6.604 17 C -0.111 4.111 18 C -0.065 4.065 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.091 4.091 22 C -0.193 4.193 23 C 0.093 3.907 24 O -0.311 6.311 25 C 0.028 3.972 26 C 0.074 3.926 27 F -0.126 7.126 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.273 0.727 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 11.347 5.826 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.332 3.668 4 O -0.400 6.400 5 C 0.028 3.972 6 N -0.152 5.152 7 C -0.452 4.452 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.525 5.525 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.263 3.737 16 O -0.490 6.490 17 C -0.151 4.151 18 C -0.103 4.103 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.109 4.109 22 C -0.212 4.212 23 C 0.047 3.953 24 O -0.224 6.224 25 C -0.067 4.067 26 C 0.054 3.946 27 F -0.104 7.104 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.282 11.222 6.143 13.491 hybrid contribution -0.457 0.784 -1.189 1.496 sum 3.824 12.007 4.954 13.540 Atomic orbital electron populations 1.22913 0.79005 1.01711 1.01482 1.86463 1.21395 1.35553 1.85657 1.23999 0.92392 0.80403 0.70021 1.90510 1.66721 1.36447 1.46290 1.20640 0.86884 0.85678 1.03955 1.43328 1.58090 1.08435 1.05382 1.19617 1.27631 1.12953 0.85031 0.88045 1.25284 0.94254 0.96280 1.00219 1.69595 1.36418 1.17834 1.28654 0.85924 0.78352 0.79894 0.80058 1.19836 1.20833 1.19707 1.20191 0.81388 0.88840 0.83303 1.90529 1.58085 1.68826 1.31546 1.21312 1.03386 0.94494 0.95876 1.20356 1.04048 0.87964 0.97923 1.20041 0.92267 0.96247 0.98247 1.20924 0.95333 0.95905 1.02189 1.20944 0.98898 0.92653 0.98405 1.21047 0.91176 1.00671 1.08301 1.19000 0.88355 0.88211 0.99778 1.86151 1.32568 1.15961 1.87729 1.23076 1.02660 0.79639 1.01332 1.16886 0.80216 0.89057 1.08483 1.91527 1.35258 1.90469 1.93192 0.89657 0.93238 0.92828 0.84460 0.90545 0.91543 0.89338 0.89947 0.89616 0.90081 0.84681 0.85233 0.84893 0.92522 0.88147 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.34 10.57 -39.25 -0.41 -8.76 16 3 C 0.49 12.50 5.91 36.01 0.21 12.72 16 4 O -0.51 -14.64 15.94 -18.75 -0.30 -14.94 16 5 C 0.15 3.79 5.29 -5.19 -0.03 3.76 16 6 N -0.43 -11.02 2.11 -116.10 -0.25 -11.26 16 7 C -0.33 -8.18 9.00 -14.94 -0.13 -8.31 16 8 H 0.10 2.37 6.72 -52.49 -0.35 2.02 16 9 C 0.04 1.07 5.41 -17.47 -0.09 0.98 16 10 N -0.88 -22.88 8.21 55.50 0.46 -22.42 16 11 Si 0.93 19.93 29.56 -169.99 -5.03 14.90 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 15 C 0.47 11.53 7.62 -10.98 -0.08 11.44 16 16 O -0.60 -15.74 15.54 5.55 0.09 -15.65 16 17 C -0.11 -2.23 4.23 -27.88 -0.12 -2.35 16 18 C -0.07 -1.15 4.42 -27.88 -0.12 -1.28 16 19 C -0.07 -1.03 5.14 -104.58 -0.54 -1.57 16 20 C -0.13 -1.54 9.68 -39.57 -0.38 -1.93 16 21 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 22 C -0.19 -2.13 9.04 -39.45 -0.36 -2.48 16 23 C 0.09 1.31 6.69 -39.18 -0.26 1.05 16 24 O -0.31 -4.23 10.36 -19.58 -0.20 -4.44 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C 0.07 1.22 7.25 -39.30 -0.28 0.93 16 27 F -0.13 -2.41 16.41 2.25 0.04 -2.37 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.14 3.38 6.28 -51.93 -0.33 3.05 16 32 H 0.08 1.79 7.36 -51.92 -0.38 1.41 16 33 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.09 1.90 8.03 -51.93 -0.42 1.48 16 35 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 36 H 0.09 1.43 7.95 -51.93 -0.41 1.01 16 37 H 0.08 1.58 7.78 -51.93 -0.40 1.17 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 41 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -33.07 370.60 -6.05 -39.12 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.49 Total: 5.54 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -0.53 Total: 14.69 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.21 Total: -33.68 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.83 Total: -43.78 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.07 -6.05 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353262608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.352 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds