Wall clock time and date at job start Tue Mar 31 2020 23:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99782 * 2 1 4 4 O 1.20826 * 120.00565 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00082 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47591 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00135 * 270.00443 * 6 5 3 8 8 H 1.08002 * 119.99947 * 202.99172 * 7 6 5 9 9 C 1.38950 * 120.00193 * 22.99158 * 7 6 5 10 10 N 1.31411 * 119.99857 * 351.26122 * 9 7 6 11 11 Si 1.86798 * 120.00165 * 171.26295 * 9 7 6 12 12 H 1.48503 * 109.47320 * 59.99592 * 11 9 7 13 13 H 1.48505 * 109.47332 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47059 * 299.99567 * 11 9 7 15 15 C 1.34782 * 119.99848 * 89.99381 * 6 5 3 16 16 O 1.21290 * 120.00305 * 5.02799 * 15 6 5 17 17 C 1.50702 * 119.99876 * 185.01509 * 15 6 5 18 18 C 1.53001 * 109.47217 * 174.80315 * 17 15 6 19 19 C 1.50699 * 109.47158 * 180.02562 * 18 17 15 20 20 C 1.38295 * 119.98281 * 264.99545 * 19 18 17 21 21 C 1.38215 * 120.12189 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.09968 * 0.02562 * 21 20 19 23 23 C 1.38623 * 119.96779 * 0.02562 * 22 21 20 24 24 O 1.35951 * 120.06120 * 180.02562 * 23 22 21 25 25 C 1.42905 * 117.00588 * 359.97369 * 24 23 22 26 26 C 1.38294 * 119.98322 * 85.00479 * 19 18 17 27 27 F 1.35102 * 120.04978 * 0.26867 * 26 19 18 28 28 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47516 * 300.00473 * 1 2 3 30 30 H 1.09009 * 109.46645 * 60.00276 * 1 2 3 31 31 H 1.08994 * 109.46781 * 59.99427 * 5 3 2 32 32 H 1.09008 * 109.46915 * 300.00102 * 5 3 2 33 33 H 0.97005 * 120.00171 * 185.01424 * 10 9 7 34 34 H 1.09006 * 109.46870 * 54.80939 * 17 15 6 35 35 H 1.08998 * 109.47297 * 294.80856 * 17 15 6 36 36 H 1.08998 * 109.46708 * 60.00164 * 18 17 15 37 37 H 1.09007 * 109.46945 * 300.00783 * 18 17 15 38 38 H 1.08002 * 119.94054 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.95101 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.01882 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.46487 * 59.99986 * 25 24 23 42 42 H 1.08991 * 109.47412 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.46864 * 300.00664 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1765 3.3363 -1.1877 8 1 4.8149 4.2067 -1.2252 9 6 3.5527 2.8821 -2.3432 10 7 2.9176 1.7316 -2.3382 11 14 3.6168 3.9067 -3.9038 12 1 5.0316 4.0992 -4.3119 13 1 2.8807 3.2061 -4.9867 14 1 2.9895 5.2293 -3.6537 15 6 4.1722 3.3268 1.1668 16 8 4.0890 2.7232 2.2155 17 6 4.4889 4.8001 1.1684 18 6 4.5286 5.3116 2.6099 19 6 4.8447 6.7851 2.6115 20 6 6.1502 7.2117 2.7733 21 6 6.4434 8.5624 2.7747 22 6 5.4325 9.4914 2.6149 23 6 4.1223 9.0681 2.4535 24 8 3.1266 9.9802 2.2957 25 6 3.5018 11.3590 2.3067 26 6 3.8290 7.7100 2.4514 27 9 2.5528 7.2937 2.2990 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8909 33 1 2.5447 1.3799 -3.1617 34 1 3.7201 5.3376 0.6133 35 1 5.4584 4.9639 0.6979 36 1 5.2974 4.7741 3.1650 37 1 3.5591 5.1477 3.0804 38 1 6.9421 6.4881 2.8987 39 1 7.4639 8.8925 2.9016 40 1 5.6631 10.5465 2.6158 41 1 4.2054 11.5504 1.4965 42 1 2.6149 11.9780 2.1720 43 1 3.9715 11.6001 3.2604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353262608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:20 Heat of formation + Delta-G solvation = -185.779881 kcal Electronic energy + Delta-G solvation = -29854.672803 eV Core-core repulsion = 25393.953941 eV Total energy + Delta-G solvation = -4460.718862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.82919 -41.37496 -40.98614 -40.21849 -38.70980 -37.36559 -36.51786 -34.71073 -33.47648 -31.31429 -31.05958 -29.81848 -28.21491 -27.87930 -26.75980 -25.16009 -23.52399 -22.40788 -21.78967 -21.08153 -19.10043 -18.89203 -18.47911 -18.12428 -18.04686 -17.81385 -17.29300 -17.14102 -16.95821 -16.19238 -16.16994 -16.04149 -15.94315 -15.63125 -15.44927 -14.93664 -14.55221 -14.28872 -14.23745 -13.93065 -13.68559 -13.54508 -13.28205 -13.02649 -12.98343 -12.95855 -12.83395 -12.64734 -12.44893 -12.38281 -12.15530 -12.00656 -11.93203 -11.89777 -11.59517 -11.48576 -10.93914 -10.54530 -9.90131 -9.71885 -9.20430 -8.34495 -6.02610 0.11404 0.28199 1.38275 1.44574 1.53188 1.67540 1.82575 2.18623 2.20950 2.33690 2.57050 2.91840 3.12647 3.30365 3.66216 3.87314 4.07801 4.11300 4.19692 4.27797 4.28256 4.33653 4.37567 4.38768 4.39586 4.40503 4.56620 4.57432 4.69485 4.71582 4.76703 4.94089 4.98582 5.05068 5.10608 5.20269 5.34872 5.39970 5.48261 5.63243 5.71250 5.75041 6.31946 6.33430 7.04571 7.21424 7.44849 7.84447 8.66757 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.003309 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.940575 B = 8459.046196 C = 9068.771161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.552 6.552 5 C 0.151 3.849 6 N -0.445 5.445 7 C -0.342 4.342 8 H 0.116 0.884 9 C -0.001 4.001 10 N -0.905 5.905 11 Si 0.994 3.006 12 H -0.251 1.251 13 H -0.285 1.285 14 H -0.280 1.280 15 C 0.460 3.540 16 O -0.628 6.628 17 C -0.099 4.099 18 C -0.054 4.054 19 C -0.082 4.082 20 C -0.125 4.125 21 C -0.074 4.074 22 C -0.181 4.181 23 C 0.084 3.916 24 O -0.342 6.342 25 C 0.017 3.983 26 C 0.027 3.973 27 F -0.157 7.157 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.272 0.728 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 13.416 5.479 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.335 3.665 4 O -0.442 6.442 5 C 0.026 3.974 6 N -0.163 5.163 7 C -0.469 4.469 8 H 0.133 0.867 9 C -0.201 4.201 10 N -0.546 5.546 11 Si 0.818 3.182 12 H -0.175 1.175 13 H -0.210 1.210 14 H -0.206 1.206 15 C 0.251 3.749 16 O -0.516 6.516 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.083 4.083 20 C -0.143 4.143 21 C -0.091 4.091 22 C -0.199 4.199 23 C 0.038 3.962 24 O -0.256 6.256 25 C -0.077 4.077 26 C 0.007 3.993 27 F -0.135 7.135 28 H 0.153 0.847 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.175 0.825 39 H 0.192 0.808 40 H 0.188 0.812 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.587 13.276 5.799 15.914 hybrid contribution -1.207 0.154 -1.029 1.594 sum 5.379 13.430 4.769 15.233 Atomic orbital electron populations 1.23285 0.76418 1.04856 1.01021 1.86428 1.23893 1.33767 1.84961 1.24124 0.92737 0.80631 0.69006 1.90482 1.67590 1.37817 1.48273 1.20675 0.86773 0.85946 1.04010 1.43581 1.58055 1.08766 1.05946 1.20020 1.28264 1.13489 0.85100 0.86669 1.26127 0.93842 0.97101 1.03043 1.69690 1.36863 1.18912 1.29094 0.84965 0.79265 0.77618 0.76384 1.17542 1.21001 1.20594 1.20940 0.80828 0.90427 0.82736 1.90491 1.59121 1.69770 1.32241 1.21241 1.03722 0.91208 0.97680 1.20147 1.02672 0.90329 0.95983 1.19882 0.93668 0.94293 1.00479 1.21230 0.94136 0.97667 1.01271 1.21452 1.00774 0.91413 0.95505 1.21519 0.89605 1.02804 1.05998 1.19179 0.89806 0.87422 0.99836 1.86114 1.33629 1.18155 1.87738 1.23439 1.04157 0.77068 1.03025 1.17410 0.79383 0.90942 1.11555 1.91433 1.37319 1.90966 1.93830 0.84681 0.93252 0.93803 0.84623 0.89970 0.91750 0.91274 0.87523 0.88715 0.93267 0.82543 0.80827 0.81186 0.90941 0.86726 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.37 -16.83 10.57 -51.38 -0.54 -17.37 16 3 C 0.49 25.77 5.91 71.24 0.42 26.19 16 4 O -0.55 -32.60 15.94 21.96 0.35 -32.25 16 5 C 0.15 7.68 5.29 85.64 0.45 8.13 16 6 N -0.44 -23.21 2.11 -639.60 -1.35 -24.57 16 7 C -0.34 -17.39 9.00 84.04 0.76 -16.64 16 8 H 0.12 5.36 6.72 -2.91 -0.02 5.34 16 9 C 0.00 -0.04 5.41 84.93 0.46 0.42 16 10 N -0.91 -47.44 8.21 21.66 0.18 -47.26 16 11 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 12 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.46 23.14 7.62 87.66 0.67 23.81 16 16 O -0.63 -33.94 15.54 -3.06 -0.05 -33.99 16 17 C -0.10 -4.10 4.23 29.85 0.13 -3.97 16 18 C -0.05 -1.96 4.42 29.85 0.13 -1.83 16 19 C -0.08 -2.54 5.14 -19.84 -0.10 -2.64 16 20 C -0.13 -2.75 9.68 22.28 0.22 -2.53 16 21 C -0.07 -1.21 10.04 22.26 0.22 -0.99 16 22 C -0.18 -3.32 9.04 22.36 0.20 -3.12 16 23 C 0.08 2.29 6.69 22.53 0.15 2.44 16 24 O -0.34 -9.14 10.36 -92.99 -0.96 -10.10 16 25 C 0.02 0.23 9.81 113.37 1.11 1.35 16 26 C 0.03 0.91 7.25 22.45 0.16 1.07 16 27 F -0.16 -6.50 16.41 44.97 0.74 -5.76 16 28 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.14 6.87 6.28 -2.39 -0.02 6.85 16 32 H 0.08 3.98 7.36 -2.38 -0.02 3.96 16 33 H 0.27 13.75 8.32 -92.70 -0.77 12.97 16 34 H 0.07 3.13 8.03 -2.38 -0.02 3.11 16 35 H 0.11 3.82 7.74 -2.39 -0.02 3.80 16 36 H 0.09 3.21 7.95 -2.39 -0.02 3.19 16 37 H 0.05 2.07 7.78 -2.38 -0.02 2.05 16 38 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.17 1.80 6.30 -2.91 -0.02 1.78 16 41 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 0.73 7.66 -2.38 -0.02 0.72 16 Total: -1.00 -76.07 370.60 7.61 -68.46 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.04 Total: 25.90 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 6.18 Total: 34.24 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.17 Total: -71.83 kcal Atomic # 8 Polarization: -92.51 SS G_CDS: -1.20 Total: -93.72 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.74 Total: -5.76 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -76.07 7.61 -68.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353262608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.315 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds