Wall clock time and date at job start Tue Mar 31 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.52999 * 109.47260 * 120.00249 * 2 1 3 5 5 S 1.81403 * 109.47153 * 184.99885 * 4 2 1 6 6 C 1.81394 * 101.92080 * 180.02562 * 5 4 2 7 7 O 1.42104 * 108.57764 * 65.51356 * 5 4 2 8 8 O 1.42100 * 108.57849 * 294.48887 * 5 4 2 9 9 N 1.46506 * 109.47219 * 240.00277 * 2 1 3 10 10 C 1.34777 * 119.99524 * 84.99898 * 9 2 1 11 11 O 1.21279 * 120.00481 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99695 * 180.02562 * 10 9 2 13 13 C 1.53000 * 109.47384 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47193 * 305.00113 * 13 12 10 15 15 C 1.50696 * 109.46729 * 65.00141 * 13 12 10 16 16 H 1.08008 * 119.99972 * 234.67740 * 15 13 12 17 17 C 1.37879 * 120.00554 * 54.68040 * 15 13 12 18 18 N 1.31516 * 119.99332 * 4.87037 * 17 15 13 19 19 Si 1.86795 * 120.00253 * 184.87159 * 17 15 13 20 20 H 1.48501 * 109.47527 * 89.99818 * 19 17 15 21 21 H 1.48499 * 109.46973 * 209.99971 * 19 17 15 22 22 H 1.48499 * 109.47184 * 329.99543 * 19 17 15 23 23 C 1.50694 * 109.47236 * 184.99849 * 13 12 10 24 24 C 1.38233 * 119.99938 * 151.48303 * 23 13 12 25 25 C 1.38244 * 120.00023 * 179.78722 * 24 23 13 26 26 C 1.38231 * 119.99542 * 0.44814 * 25 24 23 27 27 C 1.38230 * 120.00534 * 359.80460 * 26 25 24 28 28 C 1.38234 * 119.99784 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47134 * 59.99880 * 1 2 3 30 30 H 1.08998 * 109.46606 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46666 * 299.99492 * 1 2 3 32 32 H 1.08998 * 109.46861 * 64.99980 * 4 2 1 33 33 H 1.09000 * 109.47283 * 304.99785 * 4 2 1 34 34 H 1.09000 * 109.47546 * 299.99741 * 6 5 4 35 35 H 1.09000 * 109.47292 * 60.00151 * 6 5 4 36 36 H 1.09006 * 109.47155 * 180.02562 * 6 5 4 37 37 H 0.96992 * 119.99989 * 264.99812 * 9 2 1 38 38 H 1.09008 * 109.47021 * 300.00237 * 12 10 9 39 39 H 1.09003 * 109.46861 * 59.99653 * 12 10 9 40 40 H 0.97001 * 119.99369 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.00222 * 0.02562 * 24 23 13 42 42 H 1.08001 * 119.99862 * 180.28076 * 25 24 23 43 43 H 1.08004 * 119.99489 * 179.83783 * 26 25 24 44 44 H 1.07997 * 120.00339 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99787 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8479 -0.5933 1.3256 6 6 4.2236 -1.4993 2.8515 7 8 4.1978 0.7715 1.5109 8 8 4.3992 -1.3079 0.2280 9 7 2.0184 -0.6906 -1.1962 10 6 2.1471 -0.0181 -2.3571 11 8 1.8582 1.1585 -2.4117 12 6 2.6489 -0.7285 -3.5878 13 6 2.6999 0.2545 -4.7591 14 1 1.7200 0.7133 -4.8913 15 6 3.7212 1.3248 -4.4724 16 1 3.4376 2.3663 -4.5118 17 6 5.0176 0.9748 -4.1598 18 7 5.3872 -0.2865 -4.2052 19 14 6.2489 2.2920 -3.6717 20 1 6.2095 2.4855 -2.1999 21 1 7.6131 1.8696 -4.0790 22 1 5.9031 3.5679 -4.3481 23 6 3.0835 -0.4819 -6.0166 24 6 2.6501 -0.0224 -7.2462 25 6 3.0058 -0.6954 -8.4002 26 6 3.7870 -1.8332 -8.3237 27 6 4.2160 -2.2958 -7.0938 28 6 3.8643 -1.6202 -5.9402 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1370 34 1 3.7249 -1.0174 3.6924 35 1 3.8711 -2.5267 2.7602 36 1 5.3007 -1.4979 3.0191 37 1 2.2491 -1.6317 -1.1527 38 1 3.6481 -1.1211 -3.3987 39 1 1.9760 -1.5504 -3.8326 40 1 6.2992 -0.5328 -3.9849 41 1 2.0369 0.8647 -7.3057 42 1 2.6709 -0.3338 -9.3612 43 1 4.0626 -2.3605 -9.2251 44 1 4.8261 -3.1849 -7.0340 45 1 4.1991 -1.9818 -4.9792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356117161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:36 Heat of formation + Delta-G solvation = -76.967380 kcal Electronic energy + Delta-G solvation = -28403.711739 eV Core-core repulsion = 24513.924517 eV Total energy + Delta-G solvation = -3889.787222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.17387 -38.05921 -36.92813 -36.01929 -35.69664 -34.02854 -31.38473 -30.86333 -29.84734 -29.71710 -28.22138 -27.76494 -25.71219 -22.81089 -21.65434 -21.13750 -20.02733 -19.21710 -18.83477 -16.88676 -16.64069 -16.42049 -16.05167 -15.80727 -15.36470 -15.26300 -14.85758 -14.14844 -13.81688 -13.66024 -13.54857 -13.43200 -13.37115 -13.09042 -12.89699 -12.74088 -12.43597 -12.15798 -12.09523 -11.97282 -11.90221 -11.54212 -11.40945 -11.30839 -11.18435 -11.02701 -10.76493 -10.67529 -10.51482 -10.29973 -10.07674 -9.84419 -9.19510 -9.08749 -8.72705 -8.57928 -8.27789 -7.72837 -7.35346 -5.84879 -3.94291 -0.12002 2.57281 2.65921 2.67574 3.44112 3.50690 3.54608 3.59454 3.62872 3.75236 3.96520 4.36256 4.52335 4.56781 4.57998 4.89313 5.05418 5.11586 5.34976 5.37909 5.38918 5.39218 5.65895 5.85973 5.87630 5.97879 6.07598 6.17920 6.22216 6.45594 6.54005 6.67938 6.80319 6.85901 6.98289 7.21718 7.25499 7.34978 7.57805 7.64021 7.78349 8.05947 8.15462 8.26295 8.26955 8.46296 9.01722 9.22772 9.69140 11.09674 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.004038 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.575487 B = 6932.076684 C = 7592.551565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.100 0.900 4 C -0.624 4.624 5 S 2.415 3.585 6 C -0.665 4.665 7 O -0.932 6.932 8 O -0.912 6.912 9 N -0.752 5.752 10 C 0.529 3.471 11 O -0.524 6.524 12 C -0.140 4.140 13 C 0.089 3.911 14 H 0.037 0.963 15 C -0.475 4.475 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.886 3.114 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.400 0.600 38 H 0.137 0.863 39 H 0.053 0.947 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -8.365 12.470 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.118 0.882 4 C -0.753 4.753 5 S 2.594 3.406 6 C -0.813 4.813 7 O -0.929 6.929 8 O -0.909 6.909 9 N -0.409 5.409 10 C 0.319 3.681 11 O -0.397 6.397 12 C -0.180 4.180 13 C 0.070 3.930 14 H 0.055 0.945 15 C -0.512 4.512 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.026 4.026 24 C -0.151 4.151 25 C -0.161 4.161 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.234 0.766 38 H 0.155 0.845 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.380 -7.158 11.879 15.266 hybrid contribution 0.567 -0.210 1.036 1.200 sum -5.813 -7.368 12.915 15.965 Atomic orbital electron populations 1.22109 0.94151 1.02106 1.02789 1.20372 0.95662 0.97337 0.81753 0.88156 1.30709 1.26813 1.10550 1.07214 1.08234 0.78392 0.76572 0.77364 1.30394 1.12370 1.15387 1.23119 1.93624 1.81222 1.31862 1.86211 1.93670 1.75035 1.74329 1.47850 1.46470 1.70446 1.14325 1.09698 1.21199 0.75240 0.87472 0.84230 1.90613 1.48263 1.15982 1.84873 1.21974 1.04239 0.98680 0.93106 1.17626 0.96191 0.92278 0.86950 0.94513 1.20939 0.93462 0.92578 1.44233 0.92319 1.24871 0.98097 0.95450 0.95418 1.69638 1.18318 1.15460 1.48902 0.86661 0.80422 0.82285 0.79215 1.20457 1.21399 1.20035 1.20352 0.94242 0.92509 0.95533 1.20893 1.01936 0.99625 0.92606 1.20787 1.00958 0.97029 0.97279 1.20751 1.01613 0.98131 0.96844 1.21042 1.01475 1.00271 0.93353 1.21393 0.94477 0.94207 0.98603 0.91120 0.92403 0.92008 0.84626 0.84116 0.85725 0.85485 0.85377 0.76553 0.84528 0.92888 0.92826 0.87712 0.88177 0.88385 0.88125 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.16 2.12 2.57 -67.93 -0.17 1.95 16 3 H 0.10 1.66 7.58 -51.93 -0.39 1.27 16 4 C -0.62 -5.30 5.33 37.16 0.20 -5.10 16 5 S 2.41 28.27 5.28 -107.50 -0.57 27.70 16 6 C -0.66 -4.22 10.62 101.05 1.07 -3.15 16 7 O -0.93 -15.50 18.10 -57.83 -1.05 -16.54 16 8 O -0.91 -14.69 16.90 -57.83 -0.98 -15.67 16 9 N -0.75 -12.39 4.16 -53.80 -0.22 -12.62 16 10 C 0.53 11.44 7.54 -10.98 -0.08 11.35 16 11 O -0.52 -13.05 14.65 5.56 0.08 -12.97 16 12 C -0.14 -3.11 4.07 -27.88 -0.11 -3.22 16 13 C 0.09 2.20 1.97 -92.93 -0.18 2.01 16 14 H 0.04 0.92 7.91 -51.93 -0.41 0.50 16 15 C -0.47 -13.24 7.27 -34.44 -0.25 -13.49 16 16 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 17 C 0.06 1.72 5.12 -17.82 -0.09 1.63 16 18 N -0.88 -23.81 7.99 55.43 0.44 -23.37 16 19 Si 0.89 22.85 29.54 -169.99 -5.02 17.83 16 20 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.03 -0.60 4.69 -104.63 -0.49 -1.09 16 24 C -0.13 -2.90 9.71 -39.58 -0.38 -3.29 16 25 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.16 -3.00 10.05 -39.59 -0.40 -3.40 16 27 C -0.14 -2.92 10.05 -39.59 -0.40 -3.32 16 28 C -0.07 -1.55 7.45 -39.58 -0.30 -1.84 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.14 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.12 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.13 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.40 5.58 8.20 -40.82 -0.33 5.24 16 38 H 0.14 3.29 4.71 -51.92 -0.24 3.04 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.14 3.27 5.18 -52.48 -0.27 3.00 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -36.96 379.12 -9.93 -46.89 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.70 Total: 8.59 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -1.63 Total: -25.55 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.22 Total: -35.98 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.94 Total: -45.18 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 16 Polarization: 28.27 SS G_CDS: -0.57 Total: 27.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.96 -9.93 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.075 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds