Wall clock time and date at job start Tue Mar 31 2020 22:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47033 * 2 1 4 4 C 1.53006 * 109.46594 * 240.00212 * 2 1 3 5 5 S 1.81403 * 109.46794 * 180.02562 * 4 2 1 6 6 C 1.81400 * 101.91965 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.57722 * 294.49066 * 5 4 2 8 8 O 1.42101 * 108.57744 * 65.51248 * 5 4 2 9 9 N 1.46494 * 109.47168 * 120.00688 * 2 1 3 10 10 C 1.34780 * 119.99915 * 275.00015 * 9 2 1 11 11 O 1.21284 * 119.99631 * 359.97438 * 10 9 2 12 12 C 1.50698 * 120.00342 * 180.02562 * 10 9 2 13 13 C 1.52994 * 109.47404 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46845 * 55.00037 * 13 12 10 15 15 C 1.50695 * 109.47338 * 294.99823 * 13 12 10 16 16 H 1.07999 * 119.99680 * 325.84831 * 15 13 12 17 17 C 1.37878 * 120.00406 * 145.84711 * 15 13 12 18 18 N 1.31516 * 119.99645 * 6.11520 * 17 15 13 19 19 Si 1.86797 * 120.00147 * 186.12000 * 17 15 13 20 20 H 1.48501 * 109.47353 * 59.99867 * 19 17 15 21 21 H 1.48501 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47429 * 299.99678 * 19 17 15 23 23 C 1.50702 * 109.47283 * 174.99520 * 13 12 10 24 24 C 1.38238 * 119.99617 * 63.46695 * 23 13 12 25 25 C 1.38235 * 119.99648 * 179.79206 * 24 23 13 26 26 C 1.38238 * 120.00395 * 0.43394 * 25 24 23 27 27 C 1.38241 * 119.99323 * 359.81511 * 26 25 24 28 28 C 1.38230 * 120.00330 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47805 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46862 * 300.00072 * 1 2 3 31 31 H 1.09004 * 109.46883 * 59.99360 * 1 2 3 32 32 H 1.09002 * 109.47050 * 299.99747 * 4 2 1 33 33 H 1.09000 * 109.47180 * 60.00073 * 4 2 1 34 34 H 1.08997 * 109.47408 * 60.00111 * 6 5 4 35 35 H 1.08998 * 109.46994 * 180.02562 * 6 5 4 36 36 H 1.09007 * 109.46879 * 300.00109 * 6 5 4 37 37 H 0.97000 * 120.00321 * 94.98854 * 9 2 1 38 38 H 1.09009 * 109.46625 * 299.99658 * 12 10 9 39 39 H 1.08998 * 109.47404 * 59.99218 * 12 10 9 40 40 H 0.97003 * 119.99566 * 179.97438 * 18 17 15 41 41 H 1.07996 * 119.99976 * 359.97438 * 24 23 13 42 42 H 1.07996 * 119.99870 * 180.27722 * 25 24 23 43 43 H 1.07989 * 120.00367 * 179.84164 * 26 25 24 44 44 H 1.08006 * 119.99590 * 179.97438 * 27 26 25 45 45 H 1.08003 * 119.99990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 16 3.8539 -0.7220 -1.2490 6 6 4.2285 -1.6086 -2.7866 7 8 4.3072 0.6186 -1.3780 8 8 4.3062 -1.5048 -0.1527 9 7 2.0183 -0.6907 1.1960 10 6 2.1471 -0.0185 2.3571 11 8 1.8590 1.1584 2.4115 12 6 2.6499 -0.7288 3.5874 13 6 2.7019 0.2543 4.7585 14 1 1.7221 0.7130 4.8915 15 6 3.7229 1.3247 4.4710 16 1 4.6174 1.0827 3.9163 17 6 3.5151 2.6131 4.9159 18 7 2.4885 2.8830 5.6924 19 14 4.6916 3.9751 4.4158 20 1 4.7001 4.1035 2.9364 21 1 4.2503 5.2574 5.0210 22 1 6.0594 3.6474 4.8920 23 6 3.0865 -0.4820 6.0159 24 6 4.3259 -1.0869 6.1109 25 6 4.6804 -1.7586 7.2658 26 6 3.7921 -1.8333 8.3224 27 6 2.5507 -1.2328 8.2253 28 6 2.1979 -0.5574 7.0721 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.8012 -1.0680 -3.6311 35 1 5.3091 -1.6809 -2.9103 36 1 3.8004 -2.6100 -2.7421 37 1 2.2489 -1.6319 1.1525 38 1 1.9776 -1.5511 3.8324 39 1 3.6492 -1.1207 3.3978 40 1 2.3426 3.7893 6.0058 41 1 5.0183 -1.0320 5.2839 42 1 5.6504 -2.2273 7.3418 43 1 4.0681 -2.3603 9.2237 44 1 1.8565 -1.2915 9.0506 45 1 1.2279 -0.0886 6.9961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356117187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:43 Heat of formation + Delta-G solvation = -84.060608 kcal Electronic energy + Delta-G solvation = -27944.439303 eV Core-core repulsion = 24054.344496 eV Total energy + Delta-G solvation = -3890.094807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.26079 -38.19104 -37.05812 -36.14415 -35.77377 -33.81647 -31.64881 -31.07872 -29.93477 -29.90806 -28.54381 -27.82460 -25.45523 -22.93906 -21.69309 -21.38645 -20.10348 -19.25924 -18.95444 -16.93825 -16.69467 -16.51190 -16.30011 -16.00601 -15.55798 -15.46761 -14.47620 -14.27918 -14.06219 -13.78646 -13.64221 -13.55379 -13.47509 -13.17890 -12.88013 -12.84975 -12.46197 -12.25680 -12.13184 -12.09990 -12.03975 -11.80677 -11.65396 -11.50902 -11.26268 -11.11904 -10.74135 -10.61722 -10.56524 -10.48798 -10.16961 -9.96493 -9.35288 -8.98857 -8.80765 -8.66220 -8.23036 -7.96068 -7.51839 -5.83775 -3.82454 -0.23104 2.37403 2.42959 2.56510 3.48048 3.48939 3.50275 3.51493 3.58685 3.60360 3.85594 4.28618 4.43476 4.48728 4.62585 4.79163 4.83946 5.07142 5.28622 5.32470 5.34116 5.49111 5.62558 5.73568 5.78427 5.81533 5.92156 6.06253 6.20678 6.21212 6.34520 6.39152 6.49815 6.64043 6.86427 6.92090 6.99876 7.13366 7.39180 7.53919 7.61517 7.96633 8.04225 8.08709 8.16093 8.49358 9.11721 9.17838 9.79456 11.26324 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003836 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.547671 B = 7296.846102 C = 8081.473819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.103 0.897 4 C -0.623 4.623 5 S 2.419 3.581 6 C -0.664 4.664 7 O -0.930 6.930 8 O -0.923 6.923 9 N -0.757 5.757 10 C 0.518 3.482 11 O -0.491 6.491 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.492 4.492 16 H 0.051 0.949 17 C 0.079 3.921 18 N -0.883 5.883 19 Si 0.883 3.117 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.157 4.157 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -13.445 -14.807 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.121 0.879 4 C -0.752 4.752 5 S 2.599 3.401 6 C -0.812 4.812 7 O -0.927 6.927 8 O -0.920 6.920 9 N -0.416 5.416 10 C 0.305 3.695 11 O -0.362 6.362 12 C -0.164 4.164 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.529 4.529 16 H 0.069 0.931 17 C -0.124 4.124 18 N -0.520 5.520 19 Si 0.712 3.288 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.020 4.020 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.175 4.175 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.203 -12.023 -14.040 18.615 hybrid contribution 0.287 0.003 -0.990 1.030 sum -1.916 -12.020 -15.029 19.340 Atomic orbital electron populations 1.22116 0.94012 1.02126 1.03010 1.20393 0.95844 0.97419 0.81441 0.87899 1.30694 1.26646 1.10536 1.07332 1.08072 0.78334 0.76404 0.77307 1.30381 1.12413 1.15170 1.23241 1.93635 1.78533 1.34111 1.86426 1.93610 1.78502 1.71645 1.48229 1.46556 1.70760 1.14387 1.09856 1.20958 0.76957 0.87710 0.83894 1.90762 1.46124 1.15178 1.84106 1.21819 1.01049 0.99196 0.94314 1.17841 1.00589 0.90567 0.84929 0.91004 1.20687 1.05030 0.92680 1.34518 0.93058 1.24788 0.94973 0.98376 0.94238 1.69909 1.28776 1.20067 1.33269 0.86797 0.81201 0.81590 0.79256 1.20042 1.21498 1.20506 1.20736 0.92486 0.90841 0.97963 1.20978 0.96874 0.97964 0.97449 1.20972 0.98633 1.00948 0.94425 1.20782 0.95100 1.03125 0.98466 1.20969 0.96549 0.99484 0.97710 1.21073 0.99970 0.99047 0.93636 0.92420 0.90932 0.91938 0.84630 0.83965 0.85592 0.85329 0.85481 0.76522 0.91585 0.89940 0.93194 0.86790 0.87703 0.87884 0.87727 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.16 2.00 2.63 -67.93 -0.18 1.82 16 3 H 0.10 1.62 7.58 -51.93 -0.39 1.23 16 4 C -0.62 -4.59 5.37 37.16 0.20 -4.39 16 5 S 2.42 24.05 5.24 -107.50 -0.56 23.48 16 6 C -0.66 -3.28 10.62 101.05 1.07 -2.21 16 7 O -0.93 -14.07 18.10 -57.83 -1.05 -15.11 16 8 O -0.92 -12.41 16.46 -57.83 -0.95 -13.36 16 9 N -0.76 -11.49 4.07 -53.81 -0.22 -11.71 16 10 C 0.52 10.65 7.54 -10.99 -0.08 10.57 16 11 O -0.49 -12.41 14.65 5.55 0.08 -12.33 16 12 C -0.12 -2.52 4.95 -27.89 -0.14 -2.65 16 13 C 0.08 1.97 1.67 -92.93 -0.16 1.82 16 14 H 0.07 2.00 6.98 -51.93 -0.36 1.64 16 15 C -0.49 -13.77 6.37 -34.44 -0.22 -13.99 16 16 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 17 C 0.08 2.32 5.45 -17.82 -0.10 2.22 16 18 N -0.88 -26.57 12.87 55.43 0.71 -25.85 16 19 Si 0.88 23.21 29.54 -169.99 -5.02 18.19 16 20 H -0.27 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.11 -2.42 8.86 -39.58 -0.35 -2.77 16 25 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.16 -2.82 10.05 -39.58 -0.40 -3.22 16 27 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 28 C -0.12 -2.58 9.67 -39.59 -0.38 -2.97 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.14 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.14 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.40 4.93 7.77 -40.82 -0.32 4.62 16 38 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 39 H 0.08 1.62 7.77 -51.93 -0.40 1.21 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.11 2.36 7.76 -52.49 -0.41 1.95 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.11 2.46 7.95 -52.48 -0.42 2.04 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -39.19 389.16 -9.73 -48.92 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.92 Total: 5.72 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -1.67 Total: -23.81 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.49 Total: -37.57 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.92 Total: -40.80 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 16 Polarization: 24.05 SS G_CDS: -0.56 Total: 23.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.19 -9.73 -48.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.141 kcal (2) G-P(sol) polarization free energy of solvation -39.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds