Wall clock time and date at job start Tue Mar 31 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47172 * 2 1 4 4 N 1.46501 * 109.46848 * 240.00220 * 2 1 3 5 5 S 1.65606 * 119.99645 * 95.00088 * 4 2 1 6 6 O 1.42098 * 106.40411 * 311.45596 * 5 4 2 7 7 O 1.42102 * 106.40001 * 178.54068 * 5 4 2 8 8 C 1.76196 * 107.21920 * 64.99874 * 5 4 2 9 9 C 1.38637 * 119.74843 * 89.99961 * 8 5 4 10 10 C 1.37624 * 120.24722 * 179.97438 * 9 8 5 11 11 C 1.40711 * 119.74269 * 359.97438 * 10 9 8 12 12 C 1.41398 * 120.24178 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99716 * 155.56930 * 12 11 10 14 14 C 1.39944 * 120.00134 * 335.30554 * 12 11 10 15 15 N 1.30821 * 119.99661 * 342.55151 * 14 12 11 16 16 Si 1.86796 * 119.99958 * 162.56169 * 14 12 11 17 17 H 1.48497 * 109.47620 * 59.99793 * 16 14 12 18 18 H 1.48504 * 109.47201 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46993 * 299.99311 * 16 14 12 20 20 C 1.40714 * 119.51475 * 0.27850 * 11 10 9 21 21 C 1.37612 * 119.74317 * 359.46176 * 20 11 10 22 22 C 1.52999 * 109.47346 * 120.00542 * 2 1 3 23 23 H 1.09001 * 109.52273 * 60.12069 * 22 2 1 24 24 C 1.53182 * 109.51994 * 299.99923 * 22 2 1 25 25 C 1.53182 * 109.03611 * 183.11548 * 24 22 2 26 26 C 1.53089 * 109.16125 * 56.97877 * 25 24 22 27 27 O 1.42906 * 109.41990 * 302.39043 * 26 25 24 28 28 C 1.42905 * 114.09198 * 61.15841 * 27 26 25 29 29 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46700 * 299.99363 * 1 2 3 31 31 H 1.08993 * 109.47403 * 59.99630 * 1 2 3 32 32 H 0.96999 * 120.00273 * 274.99804 * 4 2 1 33 33 H 1.07997 * 119.87513 * 0.02562 * 9 8 5 34 34 H 1.07993 * 120.12560 * 179.97438 * 10 9 8 35 35 H 0.97001 * 119.99746 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.13270 * 179.70378 * 20 11 10 37 37 H 1.08007 * 119.88031 * 180.23123 * 21 20 11 38 38 H 1.09006 * 109.54147 * 302.98129 * 24 22 2 39 39 H 1.08997 * 109.54381 * 63.24575 * 24 22 2 40 40 H 1.08995 * 109.52053 * 176.88561 * 25 24 22 41 41 H 1.08998 * 109.52049 * 297.00970 * 25 24 22 42 42 H 1.08997 * 109.48382 * 62.37738 * 26 25 24 43 43 H 1.09007 * 109.47903 * 182.40955 * 26 25 24 44 44 H 1.09009 * 109.47726 * 178.86127 * 28 27 26 45 45 H 1.08994 * 109.47949 * 58.83213 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 1.3246 1.0595 -2.7922 7 8 2.8775 -0.7632 -3.5086 8 6 3.7927 1.1911 -2.1372 9 6 5.0795 0.7092 -2.3208 10 6 6.1652 1.4924 -2.0019 11 6 5.9652 2.7871 -1.4882 12 6 7.0731 3.6006 -1.1565 13 1 6.9697 4.6756 -1.1458 14 6 8.3022 3.0127 -0.8366 15 7 8.3565 1.7471 -0.5100 16 14 9.8650 4.0352 -0.8759 17 1 9.7446 5.1605 0.0855 18 1 11.0226 3.1846 -0.4992 19 1 10.0702 4.5732 -2.2447 20 6 4.6546 3.2637 -1.3010 21 6 3.5839 2.4651 -1.6318 22 6 2.0401 -0.7214 1.2491 23 1 1.6790 -1.7498 1.2488 24 6 1.5301 -0.0002 2.5007 25 6 2.1101 -0.6842 3.7426 26 6 3.6383 -0.6794 3.6513 27 8 4.0446 -1.3381 2.4500 28 6 3.5709 -0.7151 1.2543 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.1109 -1.6561 -1.1950 33 1 5.2305 -0.2843 -2.7164 34 1 7.1668 1.1149 -2.1454 35 1 9.2083 1.3397 -0.2879 36 1 4.4896 4.2540 -0.9028 37 1 2.5770 2.8302 -1.4925 38 1 1.8485 1.0420 2.4762 39 1 0.4417 -0.0497 2.5320 40 1 1.7968 -0.1437 4.6358 41 1 1.7505 -1.7119 3.7938 42 1 3.9987 0.3492 3.6416 43 1 4.0554 -1.2028 4.5117 44 1 3.9396 -1.2642 0.3878 45 1 3.9305 0.3130 1.2132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389101185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:22 Heat of formation + Delta-G solvation = -147.255775 kcal Electronic energy + Delta-G solvation = -28624.692580 eV Core-core repulsion = 24731.857425 eV Total energy + Delta-G solvation = -3892.835155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59622 -39.38091 -38.20184 -37.51745 -36.76362 -35.80284 -34.20334 -32.06559 -31.86943 -31.29741 -30.05340 -27.61918 -26.02667 -24.74598 -23.28516 -23.02599 -22.41923 -21.22358 -20.25561 -19.42129 -18.65559 -18.14556 -17.49700 -17.15803 -17.03439 -16.78481 -16.03943 -15.82108 -15.78344 -15.17617 -15.12767 -14.97525 -14.38435 -14.24980 -14.15220 -14.04576 -13.94056 -13.61180 -13.38176 -13.16921 -13.11320 -13.00394 -12.90633 -12.88660 -12.61324 -12.57484 -12.35067 -12.03312 -12.01781 -11.84939 -11.60715 -11.47702 -11.31158 -11.22322 -11.20813 -10.54579 -10.20132 -9.78075 -9.54373 -8.86853 -6.64970 -0.28798 0.48940 1.06047 1.34690 1.43270 1.48681 2.10327 2.24879 2.52763 2.91189 2.98088 3.53075 3.61096 3.67477 3.83458 3.85325 4.04863 4.15333 4.29137 4.31642 4.35955 4.40310 4.48966 4.56003 4.60759 4.75461 4.86834 4.87682 4.93520 4.95421 4.99447 5.01370 5.09861 5.12292 5.18458 5.23905 5.32528 5.46089 5.47937 5.52389 5.59583 5.76816 5.93044 6.15617 6.19913 6.27997 6.49402 6.68521 6.81242 8.07445 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.004584 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.607331 B = 6106.892134 C = 7897.572394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.155 3.845 3 H 0.074 0.926 4 N -1.108 6.108 5 S 2.722 3.278 6 O -0.995 6.995 7 O -1.008 7.008 8 C -0.794 4.794 9 C -0.019 4.019 10 C -0.205 4.205 11 C 0.113 3.887 12 C -0.467 4.467 13 H 0.091 0.909 14 C 0.036 3.964 15 N -0.795 5.795 16 Si 0.988 3.012 17 H -0.254 1.254 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.254 4.254 21 C 0.000 4.000 22 C -0.112 4.112 23 H 0.098 0.902 24 C -0.120 4.120 25 C -0.145 4.145 26 C 0.046 3.954 27 O -0.404 6.404 28 C 0.066 3.934 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.423 0.577 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.297 0.703 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -4.213 9.309 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 H 0.093 0.907 4 N -0.868 5.868 5 S 2.817 3.183 6 O -0.985 6.985 7 O -0.999 6.999 8 C -0.887 4.887 9 C -0.039 4.039 10 C -0.226 4.226 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.109 0.891 14 C -0.184 4.184 15 N -0.418 5.418 16 Si 0.808 3.192 17 H -0.178 1.178 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.274 4.274 21 C -0.020 4.020 22 C -0.133 4.133 23 H 0.117 0.883 24 C -0.158 4.158 25 C -0.183 4.183 26 C -0.031 4.031 27 O -0.323 6.323 28 C -0.011 4.011 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.259 0.741 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.833 -4.452 8.581 13.789 hybrid contribution 1.585 0.492 0.204 1.673 sum -8.248 -3.960 8.785 12.684 Atomic orbital electron populations 1.22350 0.93241 1.03709 1.03387 1.20827 0.95492 0.95563 0.83276 0.90740 1.55475 1.82163 1.19479 1.29664 1.00413 0.73061 0.72437 0.72376 1.93464 1.53445 1.67123 1.84513 1.93462 1.82954 1.63500 1.59954 1.29616 1.13915 1.11780 1.33354 1.20406 0.91810 0.97736 0.93983 1.21321 0.97721 0.97010 1.06527 1.18171 0.93046 0.92199 0.85624 1.20198 0.94675 0.95676 1.38853 0.89079 1.26968 1.04183 0.96305 0.90926 1.69848 1.30199 1.13970 1.27770 0.85141 0.75057 0.78761 0.80279 1.17760 1.18908 1.18298 1.21259 0.92599 1.01388 1.12180 1.20435 0.98234 0.91696 0.91658 1.21989 0.94891 1.01726 0.94663 0.88328 1.21763 1.02308 0.99120 0.92636 1.22132 0.94712 1.02448 0.98992 1.22823 0.95842 0.97210 0.87179 1.87898 1.75380 1.54286 1.14733 1.22564 0.94154 0.97222 0.87173 0.90603 0.89220 0.92636 0.74087 0.87129 0.87432 0.89146 0.87114 0.85595 0.92037 0.88351 0.88779 0.90368 0.94199 0.87739 0.89750 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.17 71.98 0.66 -2.66 16 2 C 0.16 3.77 2.36 44.99 0.11 3.88 16 3 H 0.07 2.04 7.22 -2.39 -0.02 2.02 16 4 N -1.11 -30.36 4.77 -169.39 -0.81 -31.17 16 5 S 2.72 100.00 5.64 -56.49 -0.32 99.68 16 6 O -1.00 -39.34 16.52 -128.00 -2.11 -41.46 16 7 O -1.01 -42.10 17.26 -128.00 -2.21 -44.31 16 8 C -0.79 -34.01 5.84 22.46 0.13 -33.88 16 9 C -0.02 -0.91 9.49 22.22 0.21 -0.69 16 10 C -0.21 -10.57 8.70 22.73 0.20 -10.37 16 11 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 12 C -0.47 -23.28 9.05 23.46 0.21 -23.07 16 13 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 14 C 0.04 1.66 5.15 85.26 0.44 2.10 16 15 N -0.80 -38.60 10.95 21.83 0.24 -38.36 16 16 Si 0.99 34.78 29.59 68.60 2.03 36.81 16 17 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 18 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 20 C -0.25 -11.88 9.80 22.73 0.22 -11.66 16 21 C 0.00 -0.02 8.86 22.22 0.20 0.18 16 22 C -0.11 -2.47 2.08 -10.70 -0.02 -2.49 16 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 24 C -0.12 -2.14 4.86 30.72 0.15 -1.99 16 25 C -0.15 -2.41 6.14 30.68 0.19 -2.22 16 26 C 0.05 1.04 6.84 72.01 0.49 1.53 16 27 O -0.40 -12.21 10.77 -148.98 -1.60 -13.82 16 28 C 0.07 1.96 5.93 72.01 0.43 2.39 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.09 1.35 6.51 -2.38 -0.02 1.33 16 31 H 0.05 1.31 7.64 -2.39 -0.02 1.30 16 32 H 0.42 9.61 8.84 -96.74 -0.85 8.75 16 33 H 0.11 4.86 7.60 -2.91 -0.02 4.84 16 34 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 35 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 36 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.13 4.73 7.60 -2.91 -0.02 4.71 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.10 1.27 6.62 -2.39 -0.02 1.26 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.08 2.66 7.70 -2.38 -0.02 2.64 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.67 371.93 -1.15 -65.81 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.15 Total: 40.07 kcal Atomic # 6 Polarization: -76.75 SS G_CDS: 3.49 Total: -73.25 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -0.57 Total: -69.54 kcal Atomic # 8 Polarization: -93.65 SS G_CDS: -5.93 Total: -99.58 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Atomic # 16 Polarization: 100.00 SS G_CDS: -0.32 Total: 99.68 kcal Total: -64.67 -1.15 -65.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389101185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.444 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds