Wall clock time and date at job start Tue Mar 31 2020 23:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 S 1.76207 * 119.94051 * 180.28012 * 6 5 4 8 8 O 1.42098 * 106.39988 * 23.86663 * 7 6 5 9 9 O 1.42093 * 106.39815 * 156.78545 * 7 6 5 10 10 N 1.65597 * 107.21701 * 270.32779 * 7 6 5 11 11 C 1.46932 * 120.62937 * 269.71656 * 10 7 6 12 12 C 1.52752 * 109.00907 * 233.58901 * 11 10 7 13 13 C 1.53039 * 109.38428 * 305.58846 * 12 11 10 14 14 C 1.53004 * 109.46050 * 181.26179 * 13 12 11 15 15 C 1.50700 * 109.47235 * 64.93444 * 14 13 12 16 16 H 1.07998 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99935 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46933 * 89.99617 * 19 17 15 21 21 H 1.48494 * 109.47012 * 210.00132 * 19 17 15 22 22 H 1.48504 * 109.46916 * 330.00288 * 19 17 15 23 23 C 1.53040 * 109.54052 * 61.24219 * 13 12 11 24 24 C 1.46925 * 120.63468 * 90.00317 * 10 7 6 25 25 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 26 26 C 1.38146 * 120.05909 * 359.67357 * 25 6 5 27 27 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 28 28 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 29 29 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 32 32 H 1.08997 * 109.58577 * 353.42445 * 11 10 7 33 33 H 1.09005 * 109.58245 * 113.84715 * 11 10 7 34 34 H 1.09002 * 109.56492 * 185.55632 * 12 11 10 35 35 H 1.08999 * 109.36603 * 65.49936 * 12 11 10 36 36 H 1.08998 * 109.46152 * 301.22104 * 13 12 11 37 37 H 1.09008 * 109.47047 * 184.92961 * 14 13 12 38 38 H 1.08999 * 109.47511 * 304.93111 * 14 13 12 39 39 H 0.96996 * 119.99817 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.50071 * 178.68719 * 23 13 12 41 41 H 1.08997 * 109.52575 * 58.59793 * 23 13 12 42 42 H 1.08994 * 109.58871 * 246.15670 * 24 10 7 43 43 H 1.09008 * 109.58506 * 6.43461 * 24 10 7 44 44 H 1.08006 * 119.97147 * 179.69567 * 25 6 5 45 45 H 1.07993 * 120.03340 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 16 4.1020 5.2457 -0.0019 8 8 5.3973 5.0357 -0.5472 9 8 3.1704 6.1705 -0.5457 10 7 4.3257 5.6823 1.5797 11 6 3.3030 6.4591 2.2937 12 6 3.9535 7.7030 2.8960 13 6 5.1440 7.2849 3.7620 14 6 5.7777 8.5272 4.3914 15 6 4.7968 9.1653 5.3409 16 1 3.8190 8.7287 5.4811 17 6 5.1476 10.3064 6.0306 18 7 6.3385 10.8378 5.8603 19 14 3.9313 11.0978 7.2071 20 1 4.1090 10.5217 8.5642 21 1 4.1710 12.5624 7.2556 22 1 2.5470 10.8380 6.7366 23 6 6.1810 6.5675 2.8947 24 6 5.5532 5.3058 2.2940 25 6 1.9212 3.6047 -0.0004 26 6 1.2916 2.3751 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0209 0.3797 -0.0005 31 1 5.1346 2.5748 0.0090 32 1 2.5197 6.7588 1.5975 33 1 2.8737 5.8522 3.0909 34 1 3.2261 8.2345 3.5097 35 1 4.2986 8.3550 2.0935 36 1 4.8022 6.6133 4.5495 37 1 6.6768 8.2398 4.9368 38 1 6.0398 9.2381 3.6078 39 1 6.5851 11.6408 6.3453 40 1 7.0389 6.2906 3.5074 41 1 6.5055 7.2298 2.0921 42 1 5.3112 4.6030 3.0911 43 1 6.2531 4.8425 1.5985 44 1 1.3343 4.5114 -0.0003 45 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399366823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:57 Heat of formation + Delta-G solvation = -96.781816 kcal Electronic energy + Delta-G solvation = -27450.941841 eV Core-core repulsion = 23560.295400 eV Total energy + Delta-G solvation = -3890.646440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59082 -38.29841 -37.88298 -37.26713 -35.80468 -33.92496 -31.92939 -31.62775 -30.78412 -30.72055 -27.89279 -27.64398 -24.21942 -23.38581 -22.92339 -22.79352 -21.37677 -19.62079 -19.07197 -18.60441 -17.59400 -17.27311 -16.80576 -16.28970 -16.24507 -15.65890 -15.16349 -14.54109 -14.46491 -14.17994 -14.13182 -13.86156 -13.67320 -13.49030 -13.41363 -13.26535 -13.10352 -12.51909 -12.40657 -12.04794 -11.97493 -11.79007 -11.74691 -11.69219 -11.39967 -11.17974 -11.03244 -10.87139 -10.70191 -10.67095 -10.35803 -10.08259 -9.60189 -9.50169 -9.33302 -9.01765 -8.95376 -8.62928 -8.32666 -5.97513 -3.99198 0.31859 0.63011 0.89482 2.67603 2.87796 3.25025 3.32405 3.39261 3.41506 3.78958 4.14498 4.30865 4.43826 4.47151 4.60864 4.63347 4.84768 4.87965 4.94557 5.00489 5.12722 5.35352 5.37778 5.46041 5.49528 5.55255 5.56625 5.72809 5.76015 5.78366 5.82964 5.88231 6.03167 6.16895 6.21530 6.45225 6.46645 6.71245 6.72801 6.79872 7.03926 7.07076 7.16758 7.70097 7.85698 8.02853 8.45249 9.07412 9.64367 11.13769 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002608 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.861053 B =10735.230430 C =11368.013704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.313 6.313 3 C 0.177 3.823 4 C -0.173 4.173 5 C 0.019 3.981 6 C -0.712 4.712 7 S 2.693 3.307 8 O -0.959 6.959 9 O -0.958 6.958 10 N -0.991 5.991 11 C 0.116 3.884 12 C -0.117 4.117 13 C -0.079 4.079 14 C 0.026 3.974 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.127 4.127 24 C 0.119 3.881 25 C 0.022 3.978 26 C -0.230 4.230 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.143 0.857 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -21.723 -12.167 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.130 3.870 4 C -0.192 4.192 5 C -0.001 4.001 6 C -0.798 4.798 7 S 2.784 3.216 8 O -0.949 6.949 9 O -0.949 6.949 10 N -0.831 5.831 11 C -0.009 4.009 12 C -0.155 4.155 13 C -0.098 4.098 14 C -0.011 4.011 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.166 4.166 24 C -0.006 4.006 25 C 0.002 3.998 26 C -0.250 4.250 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.161 0.839 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.708 -21.326 -12.848 26.723 hybrid contribution -1.259 -0.038 1.066 1.650 sum -10.967 -21.364 -11.782 26.749 Atomic orbital electron populations 1.23175 0.77669 1.04458 1.01887 1.86106 1.22079 1.26831 1.87509 1.19331 0.92605 0.84248 0.90791 1.20557 0.91430 0.98993 1.08251 1.20761 1.00143 0.90207 0.88956 1.31104 1.05120 1.22152 1.21460 1.01911 0.73524 0.73510 0.72700 1.93556 1.38516 1.86507 1.76343 1.93559 1.64692 1.60232 1.76372 1.57602 1.27263 1.67115 1.31127 1.21571 0.89410 0.93480 0.96397 1.21782 0.99110 0.95250 0.99406 1.21157 0.94073 0.98929 0.95603 1.19143 0.95740 0.90974 0.95241 1.21243 1.00354 1.09730 1.24008 0.92599 1.25026 0.95183 0.97246 0.97078 1.69963 1.19540 1.21515 1.42468 0.86647 0.81648 0.78553 0.81437 1.20822 1.21348 1.19910 1.21981 0.98927 0.95856 0.99835 1.21553 0.84406 0.98135 0.96490 1.20735 0.92397 0.98218 0.88418 1.21359 1.00532 0.92261 1.10834 0.92105 0.92190 0.87794 0.84205 0.83511 0.89689 0.91713 0.89678 0.92108 0.92351 0.96601 0.96542 0.93082 0.91059 0.91807 0.91623 0.89651 0.83899 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.66 10.50 -19.40 -0.20 -2.86 16 3 C 0.18 1.69 6.69 -39.21 -0.26 1.43 16 4 C -0.17 -1.66 9.99 -39.43 -0.39 -2.05 16 5 C 0.02 0.19 9.52 -39.60 -0.38 -0.18 16 6 C -0.71 -8.19 5.97 -39.56 -0.24 -8.42 16 7 S 2.69 37.01 5.73 -107.50 -0.62 36.39 16 8 O -0.96 -15.04 15.87 -57.17 -0.91 -15.94 16 9 O -0.96 -15.29 15.86 -57.17 -0.91 -16.20 16 10 N -0.99 -13.57 3.30 -113.77 -0.37 -13.95 16 11 C 0.12 1.63 6.45 -3.93 -0.03 1.61 16 12 C -0.12 -2.06 5.17 -26.84 -0.14 -2.20 16 13 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 14 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 15 C -0.52 -13.96 8.39 -34.44 -0.29 -14.25 16 16 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 24 C 0.12 1.58 6.48 -3.71 -0.02 1.56 16 25 C 0.02 0.22 9.51 -39.61 -0.38 -0.15 16 26 C -0.23 -2.08 9.04 -39.43 -0.36 -2.44 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.30 7.62 -52.49 -0.40 0.90 16 32 H 0.08 1.10 6.91 -51.93 -0.36 0.75 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.02 6.92 -51.92 -0.36 0.66 16 44 H 0.14 1.31 7.61 -52.48 -0.40 0.91 16 45 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -34.12 374.07 -10.43 -44.55 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.74 Total: -2.09 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.04 Total: -25.93 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.36 Total: -39.86 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -2.02 Total: -35.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.62 Total: 36.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.12 -10.43 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399366823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.230 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds