Wall clock time and date at job start Tue Mar 31 2020 23:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 S 1.76207 * 119.94051 * 180.28012 * 6 5 4 8 8 O 1.42098 * 106.39988 * 23.86663 * 7 6 5 9 9 O 1.42093 * 106.39815 * 156.78545 * 7 6 5 10 10 N 1.65597 * 107.21701 * 270.32779 * 7 6 5 11 11 C 1.46932 * 120.62937 * 269.71656 * 10 7 6 12 12 C 1.52752 * 109.00907 * 233.58901 * 11 10 7 13 13 C 1.53039 * 109.38428 * 305.58846 * 12 11 10 14 14 C 1.53004 * 109.46050 * 181.26179 * 13 12 11 15 15 C 1.50700 * 109.47235 * 64.93444 * 14 13 12 16 16 H 1.07998 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99935 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46933 * 89.99617 * 19 17 15 21 21 H 1.48494 * 109.47012 * 210.00132 * 19 17 15 22 22 H 1.48504 * 109.46916 * 330.00288 * 19 17 15 23 23 C 1.53040 * 109.54052 * 61.24219 * 13 12 11 24 24 C 1.46925 * 120.63468 * 90.00317 * 10 7 6 25 25 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 26 26 C 1.38146 * 120.05909 * 359.67357 * 25 6 5 27 27 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 28 28 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 29 29 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 32 32 H 1.08997 * 109.58577 * 353.42445 * 11 10 7 33 33 H 1.09005 * 109.58245 * 113.84715 * 11 10 7 34 34 H 1.09002 * 109.56492 * 185.55632 * 12 11 10 35 35 H 1.08999 * 109.36603 * 65.49936 * 12 11 10 36 36 H 1.08998 * 109.46152 * 301.22104 * 13 12 11 37 37 H 1.09008 * 109.47047 * 184.92961 * 14 13 12 38 38 H 1.08999 * 109.47511 * 304.93111 * 14 13 12 39 39 H 0.96996 * 119.99817 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.50071 * 178.68719 * 23 13 12 41 41 H 1.08997 * 109.52575 * 58.59793 * 23 13 12 42 42 H 1.08994 * 109.58871 * 246.15670 * 24 10 7 43 43 H 1.09008 * 109.58506 * 6.43461 * 24 10 7 44 44 H 1.08006 * 119.97147 * 179.69567 * 25 6 5 45 45 H 1.07993 * 120.03340 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 16 4.1020 5.2457 -0.0019 8 8 5.3973 5.0357 -0.5472 9 8 3.1704 6.1705 -0.5457 10 7 4.3257 5.6823 1.5797 11 6 3.3030 6.4591 2.2937 12 6 3.9535 7.7030 2.8960 13 6 5.1440 7.2849 3.7620 14 6 5.7777 8.5272 4.3914 15 6 4.7968 9.1653 5.3409 16 1 3.8190 8.7287 5.4811 17 6 5.1476 10.3064 6.0306 18 7 6.3385 10.8378 5.8603 19 14 3.9313 11.0978 7.2071 20 1 4.1090 10.5217 8.5642 21 1 4.1710 12.5624 7.2556 22 1 2.5470 10.8380 6.7366 23 6 6.1810 6.5675 2.8947 24 6 5.5532 5.3058 2.2940 25 6 1.9212 3.6047 -0.0004 26 6 1.2916 2.3751 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0209 0.3797 -0.0005 31 1 5.1346 2.5748 0.0090 32 1 2.5197 6.7588 1.5975 33 1 2.8737 5.8522 3.0909 34 1 3.2261 8.2345 3.5097 35 1 4.2986 8.3550 2.0935 36 1 4.8022 6.6133 4.5495 37 1 6.6768 8.2398 4.9368 38 1 6.0398 9.2381 3.6078 39 1 6.5851 11.6408 6.3453 40 1 7.0389 6.2906 3.5074 41 1 6.5055 7.2298 2.0921 42 1 5.3112 4.6030 3.0911 43 1 6.2531 4.8425 1.5985 44 1 1.3343 4.5114 -0.0003 45 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399366823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:56 Heat of formation + Delta-G solvation = -119.062758 kcal Electronic energy + Delta-G solvation = -27451.908015 eV Core-core repulsion = 23560.295400 eV Total energy + Delta-G solvation = -3891.612614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22351 -39.61871 -38.53684 -38.41492 -36.95880 -35.67039 -33.75921 -32.31783 -31.96397 -31.48512 -29.46479 -28.31984 -25.95695 -24.25988 -23.99941 -23.56760 -22.95396 -21.01938 -20.03591 -19.36802 -18.74291 -18.34556 -18.25449 -17.53190 -16.79394 -16.68605 -16.51637 -15.83210 -15.50264 -15.32454 -15.13124 -14.86073 -14.78689 -14.68207 -14.60601 -14.29122 -13.97861 -13.89768 -13.55705 -13.30428 -13.23461 -13.08998 -12.92513 -12.82749 -12.57025 -12.50121 -12.31163 -12.15218 -12.03885 -11.99216 -11.91351 -11.70216 -11.27030 -10.98089 -10.78793 -10.48956 -10.20741 -9.92776 -9.66175 -8.13693 -6.22808 -0.68588 -0.18344 0.19384 1.42485 1.43526 1.54093 1.90628 2.16460 2.44474 2.45105 2.77699 3.19669 3.20572 3.63093 3.75916 3.77022 4.08472 4.10236 4.13355 4.22999 4.32270 4.35665 4.38981 4.46019 4.49178 4.56635 4.64889 4.69770 4.80930 4.85618 4.89541 4.91985 5.01380 5.02114 5.09194 5.14016 5.33118 5.39369 5.41841 5.46416 5.52915 5.61889 5.70415 5.87723 5.95028 6.20935 6.33243 6.94455 7.45610 8.98292 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002608 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.861053 B =10735.230430 C =11368.013704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.175 3.825 4 C -0.180 4.180 5 C 0.011 3.989 6 C -0.716 4.716 7 S 2.704 3.296 8 O -0.984 6.984 9 O -0.986 6.986 10 N -0.995 5.995 11 C 0.123 3.877 12 C -0.116 4.116 13 C -0.071 4.071 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.067 0.933 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.260 1.260 23 C -0.127 4.127 24 C 0.123 3.877 25 C 0.011 3.989 26 C -0.229 4.229 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.067 0.933 37 H -0.011 1.011 38 H -0.018 1.018 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.152 0.848 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -24.301 -11.924 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.127 3.873 4 C -0.199 4.199 5 C -0.009 4.009 6 C -0.806 4.806 7 S 2.799 3.201 8 O -0.975 6.975 9 O -0.977 6.977 10 N -0.834 5.834 11 C -0.002 4.002 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.785 3.215 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.184 1.184 23 C -0.166 4.166 24 C -0.002 4.002 25 C -0.009 4.009 26 C -0.248 4.248 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.141 0.859 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.007 0.993 38 H 0.000 1.000 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.169 0.831 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.189 -23.887 -12.609 29.634 hybrid contribution -0.514 0.668 0.950 1.269 sum -12.702 -23.220 -11.660 28.921 Atomic orbital electron populations 1.23500 0.75706 1.06194 1.02845 1.86105 1.24142 1.26314 1.87078 1.19525 0.92858 0.84888 0.89980 1.20798 0.91971 0.99281 1.07848 1.20944 1.00767 0.90186 0.88960 1.30606 1.05617 1.20517 1.23887 1.01234 0.72789 0.73890 0.72197 1.93516 1.40011 1.87068 1.76863 1.93516 1.65173 1.62007 1.76971 1.57540 1.27402 1.67523 1.30924 1.21509 0.89269 0.92070 0.97331 1.21708 0.98371 0.96936 0.98486 1.21004 0.95076 0.96566 0.96340 1.19060 0.94888 0.92827 0.93981 1.21691 1.01009 1.09782 1.23805 0.91480 1.25983 0.97034 0.98120 0.99129 1.70117 1.21739 1.22140 1.43910 0.85516 0.79637 0.77169 0.79138 1.19952 1.21468 1.18392 1.21934 0.98615 0.96998 0.99033 1.21592 0.84435 0.96643 0.97520 1.20949 0.92063 0.99305 0.88552 1.21627 1.01953 0.91439 1.09789 0.91134 0.91175 0.85857 0.82545 0.82539 0.88546 0.89079 0.90849 0.94158 0.91414 0.99305 0.99973 0.93127 0.90502 0.93593 0.88884 0.88163 0.83065 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.57 10.50 -92.33 -0.97 -5.54 16 3 C 0.17 2.86 6.69 22.51 0.15 3.01 16 4 C -0.18 -3.01 9.99 22.37 0.22 -2.79 16 5 C 0.01 0.20 9.52 22.26 0.21 0.41 16 6 C -0.72 -15.20 5.97 22.28 0.13 -15.07 16 7 S 2.70 72.01 5.73 -56.49 -0.32 71.69 16 8 O -0.98 -30.43 15.87 -128.00 -2.03 -32.46 16 9 O -0.99 -31.08 15.86 -128.00 -2.03 -33.11 16 10 N -0.99 -25.89 3.30 -513.84 -1.69 -27.58 16 11 C 0.12 3.26 6.45 86.21 0.56 3.82 16 12 C -0.12 -4.13 5.17 30.52 0.16 -3.97 16 13 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 14 C 0.03 1.53 4.45 29.85 0.13 1.66 16 15 C -0.52 -28.93 8.39 25.60 0.21 -28.72 16 16 H 0.07 3.47 7.05 -2.91 -0.02 3.45 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 19 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.13 -4.15 5.36 30.67 0.16 -3.99 16 24 C 0.12 3.05 6.48 86.36 0.56 3.61 16 25 C 0.01 0.20 9.51 22.25 0.21 0.41 16 26 C -0.23 -3.46 9.04 22.37 0.20 -3.26 16 27 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 28 H 0.07 0.30 7.66 -2.39 -0.02 0.29 16 29 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.16 2.50 7.62 -2.91 -0.02 2.48 16 32 H 0.10 2.36 6.91 -2.39 -0.02 2.35 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.07 2.75 6.91 -2.39 -0.02 2.73 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 38 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 2.24 6.92 -2.38 -0.02 2.22 16 44 H 0.15 2.46 7.61 -2.91 -0.02 2.44 16 45 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 Total: -1.00 -75.42 374.07 0.72 -74.70 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.98 Total: 9.91 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 4.47 Total: -46.32 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.41 Total: -84.90 kcal Atomic # 8 Polarization: -66.08 SS G_CDS: -5.03 Total: -71.11 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 72.01 SS G_CDS: -0.32 Total: 71.69 kcal Total: -75.42 0.72 -74.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399366823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.361 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds