Wall clock time and date at job start Tue Mar 31 2020 23:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 116.99975 * 2 1 4 4 C 1.38563 * 120.07005 * 359.97438 * 3 2 1 5 5 C 1.38248 * 119.99685 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.14529 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.14935 * 0.04197 * 6 5 4 8 8 C 1.50699 * 119.99857 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47158 * 5.40272 * 8 7 6 10 10 C 1.46506 * 119.99590 * 266.58350 * 9 8 7 11 11 C 1.34776 * 120.00396 * 86.58796 * 9 8 7 12 12 O 1.21275 * 119.99672 * 359.97438 * 11 9 8 13 13 C 1.50696 * 119.99987 * 180.02562 * 11 9 8 14 14 S 1.81397 * 109.47038 * 179.97438 * 13 11 9 15 15 C 1.81401 * 103.00309 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47637 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99342 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00125 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00100 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46918 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47176 * 119.99727 * 20 18 16 23 23 H 1.48494 * 109.46851 * 239.99815 * 20 18 16 24 24 C 1.38564 * 119.99750 * 359.95703 * 7 6 5 25 25 O 1.35998 * 120.07226 * 180.29807 * 24 7 6 26 26 C 1.42899 * 116.99899 * 265.12150 * 25 24 7 27 27 H 1.09000 * 109.46723 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47102 * 299.99385 * 1 2 3 29 29 H 1.08996 * 109.47612 * 59.99923 * 1 2 3 30 30 H 1.07996 * 120.00381 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.92430 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.92514 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.46952 * 125.39751 * 8 7 6 34 34 H 1.09002 * 109.47358 * 245.39755 * 8 7 6 35 35 H 1.09001 * 109.47366 * 95.39605 * 10 9 8 36 36 H 1.09007 * 109.47062 * 215.39133 * 10 9 8 37 37 H 1.09002 * 109.47379 * 335.39387 * 10 9 8 38 38 H 1.09008 * 109.47159 * 299.99450 * 13 11 9 39 39 H 1.08997 * 109.47532 * 59.99330 * 13 11 9 40 40 H 1.09009 * 109.46944 * 300.00229 * 15 14 13 41 41 H 1.08995 * 109.46984 * 59.99676 * 15 14 13 42 42 H 0.96996 * 119.99862 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46850 * 303.84189 * 26 25 24 44 44 H 1.09001 * 109.47713 * 63.84566 * 26 25 24 45 45 H 1.09001 * 109.47377 * 183.84772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6799 -0.0005 7 6 4.0602 2.5234 -0.0003 8 6 5.5648 2.6081 -0.0003 9 7 5.9751 4.0084 0.1295 10 6 6.2461 4.8064 -1.0690 11 6 6.1033 4.5627 1.3513 12 8 5.8786 3.9022 2.3433 13 6 6.5247 6.0033 1.4847 14 16 6.6048 6.4497 3.2411 15 6 7.1203 8.1884 3.1973 16 6 7.2348 8.7142 4.6049 17 1 7.0187 8.0671 5.4422 18 6 7.6145 10.0214 4.8238 19 7 7.8772 10.8094 3.8042 20 14 7.7558 10.6732 6.5687 21 1 7.4085 9.5953 7.5294 22 1 9.1476 11.1279 6.8161 23 1 6.8229 11.8146 6.7477 24 6 3.4359 1.2864 0.0002 25 8 4.1795 0.1477 0.0065 26 6 4.4491 -0.4580 -1.2593 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2146 2.3196 -0.0005 31 1 1.3341 4.5115 -0.0019 32 1 3.7907 4.6434 -0.0005 33 1 5.9610 2.0343 0.8375 34 1 5.9517 2.2012 -0.9347 35 1 5.3535 5.3706 -1.3394 36 1 7.0653 5.4969 -0.8681 37 1 6.5211 4.1455 -1.8910 38 1 7.5062 6.1384 1.0301 39 1 5.7998 6.6422 0.9805 40 1 8.0872 8.2683 2.7001 41 1 6.3809 8.7728 2.6497 42 1 8.1447 11.7289 3.9582 43 1 3.5091 -0.6627 -1.7717 44 1 5.0531 0.2180 -1.8645 45 1 4.9908 -1.3917 -1.1074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:50 Heat of formation + Delta-G solvation = -72.475889 kcal Electronic energy + Delta-G solvation = -26714.417799 eV Core-core repulsion = 22824.825343 eV Total energy + Delta-G solvation = -3889.592456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92123 -39.71368 -38.38286 -37.18675 -35.51817 -33.12154 -31.98925 -30.31186 -29.54447 -28.46876 -27.80517 -27.54187 -26.81102 -25.43808 -23.06289 -22.51236 -21.70518 -19.42147 -18.36603 -17.43546 -17.12441 -16.92940 -16.51819 -16.27057 -15.97901 -15.80408 -15.40253 -15.02783 -14.94469 -14.72124 -14.29219 -14.19902 -13.61462 -13.55045 -13.33770 -13.06686 -12.62373 -12.61524 -12.49441 -12.39420 -12.28147 -12.19308 -12.08162 -11.89633 -11.82842 -11.29421 -11.19987 -10.87756 -10.67077 -10.23473 -10.00661 -9.71624 -9.51282 -8.89299 -8.81100 -8.72885 -8.59942 -8.35404 -6.61686 -6.18032 -4.21267 0.93237 1.16206 2.32659 2.73405 2.89698 3.12956 3.25738 3.27322 3.34449 3.42099 3.67967 3.86154 4.38100 4.47336 4.59477 4.65599 4.79373 4.81941 4.91496 4.94617 4.99676 5.03441 5.09991 5.14191 5.18873 5.19570 5.21580 5.23423 5.32111 5.45924 5.48603 5.50412 5.63002 5.67105 5.97068 6.05060 6.24570 6.40289 6.48577 6.86199 7.09880 7.10751 7.25448 7.40570 7.78043 8.03691 8.27062 8.81385 9.41784 10.93582 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002213 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.434958 B =12647.795714 C =13190.575960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.109 3.891 4 C -0.202 4.202 5 C -0.080 4.080 6 C -0.128 4.128 7 C -0.072 4.072 8 C 0.165 3.835 9 N -0.622 5.622 10 C 0.077 3.923 11 C 0.532 3.468 12 O -0.502 6.502 13 C -0.128 4.128 14 S -0.236 6.236 15 C 0.074 3.926 16 C -0.508 4.508 17 H 0.068 0.932 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.066 3.934 25 O -0.322 6.322 26 C 0.035 3.965 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 -19.368 -18.090 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.063 3.937 4 C -0.221 4.221 5 C -0.098 4.098 6 C -0.147 4.147 7 C -0.074 4.074 8 C 0.042 3.958 9 N -0.358 5.358 10 C -0.067 4.067 11 C 0.319 3.681 12 O -0.375 6.375 13 C -0.279 4.279 14 S -0.010 6.010 15 C -0.073 4.073 16 C -0.547 4.547 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.021 3.979 25 O -0.238 6.238 26 C -0.059 4.059 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.716 -20.483 -16.570 28.834 hybrid contribution -0.078 1.592 -0.670 1.729 sum -11.793 -18.891 -17.240 28.164 Atomic orbital electron populations 1.23078 0.78546 1.03944 1.01379 1.86141 1.21149 1.26268 1.88655 1.19355 0.91513 0.84878 0.97974 1.21144 1.00012 0.91942 1.08978 1.20996 0.94561 0.97133 0.97098 1.20871 0.93399 0.98089 1.02315 1.20379 0.96951 0.91660 0.98415 1.20152 0.89432 0.82618 1.03603 1.47783 1.69703 1.11894 1.06438 1.21883 1.01554 0.96195 0.87021 1.20053 0.76913 0.88615 0.82508 1.90751 1.47626 1.62838 1.36275 1.23401 1.05070 0.95852 1.03551 1.87296 1.91248 1.20059 1.02402 1.21165 0.98751 0.85785 1.01602 1.20693 1.46994 0.96341 0.90709 0.91347 1.24959 0.94793 0.96273 0.97886 1.69962 1.46018 1.06971 1.30325 0.86294 0.77770 0.78897 0.83722 1.19339 1.20746 1.20759 1.17613 0.86216 0.86029 1.08015 1.86122 1.70555 1.37734 1.29398 1.22967 1.00202 0.97781 0.84962 0.88207 0.92498 0.92754 0.85117 0.85315 0.85349 0.87847 0.89197 0.92397 0.90609 0.90828 0.88085 0.88213 0.94669 0.94680 0.92621 0.93573 0.93895 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.39 10.28 -34.24 -0.35 -3.74 16 3 C 0.11 1.30 6.70 -39.12 -0.26 1.03 16 4 C -0.20 -2.09 9.04 -39.46 -0.36 -2.45 16 5 C -0.08 -0.86 10.04 -39.57 -0.40 -1.26 16 6 C -0.13 -1.56 9.14 -39.58 -0.36 -1.92 16 7 C -0.07 -0.90 5.87 -104.50 -0.61 -1.52 16 8 C 0.16 1.92 5.27 -5.20 -0.03 1.89 16 9 N -0.62 -7.50 1.72 -182.95 -0.31 -7.82 16 10 C 0.08 0.62 9.88 59.85 0.59 1.21 16 11 C 0.53 8.76 7.05 -10.99 -0.08 8.69 16 12 O -0.50 -10.46 15.50 5.56 0.09 -10.37 16 13 C -0.13 -2.15 5.05 36.00 0.18 -1.97 16 14 S -0.24 -5.43 20.79 -107.50 -2.24 -7.66 16 15 C 0.07 1.93 5.70 36.01 0.21 2.13 16 16 C -0.51 -14.53 9.13 -34.44 -0.31 -14.84 16 17 H 0.07 1.98 7.71 -52.49 -0.40 1.58 16 18 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 20 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.07 0.84 5.71 -39.12 -0.22 0.62 16 25 O -0.32 -4.00 9.63 -34.23 -0.33 -4.33 16 26 C 0.04 0.29 11.13 101.05 1.12 1.42 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.55 5.79 -52.48 -0.30 1.24 16 33 H 0.10 1.44 7.53 -51.93 -0.39 1.05 16 34 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 35 H 0.06 0.42 7.54 -51.93 -0.39 0.03 16 36 H 0.08 0.59 6.67 -51.93 -0.35 0.25 16 37 H 0.07 0.43 7.80 -51.93 -0.41 0.02 16 38 H 0.10 1.51 7.41 -51.92 -0.38 1.13 16 39 H 0.10 1.49 8.11 -51.93 -0.42 1.07 16 40 H 0.04 0.94 8.14 -51.92 -0.42 0.51 16 41 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.29 8.02 -51.93 -0.42 -0.13 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -35.46 390.01 -7.85 -43.31 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.66 Total: -2.56 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 0.36 Total: -4.08 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.42 Total: -33.04 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.60 Total: -18.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.24 Total: -7.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.46 -7.85 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.166 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds