Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99729 * 2 1 4 4 C 1.38559 * 120.07403 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99727 * 179.70807 * 4 3 2 6 6 C 1.38250 * 120.14490 * 0.54353 * 5 4 3 7 7 C 1.50704 * 119.92403 * 179.72701 * 6 5 4 8 8 N 1.46500 * 109.47163 * 269.73043 * 7 6 5 9 9 C 1.34775 * 120.00463 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00345 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.46924 * 324.99449 * 11 9 8 13 13 C 1.52997 * 109.47078 * 85.00196 * 11 9 8 14 14 S 1.81399 * 109.47054 * 205.00158 * 11 9 8 15 15 C 1.81394 * 103.00187 * 174.99971 * 14 11 9 16 16 C 1.50704 * 109.47240 * 179.97438 * 15 14 11 17 17 H 1.07990 * 120.00226 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99794 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00220 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99865 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47270 * 59.99868 * 20 18 16 22 22 H 1.48499 * 109.47286 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47279 * 300.00048 * 20 18 16 24 24 C 1.38241 * 120.14821 * 359.46083 * 6 5 4 25 25 C 1.38558 * 119.99670 * 0.26268 * 24 6 5 26 26 O 1.36002 * 120.07243 * 179.97438 * 25 24 6 27 27 C 1.42896 * 116.99855 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47437 * 299.99863 * 1 2 3 30 30 H 1.09007 * 109.47009 * 60.00236 * 1 2 3 31 31 H 1.08004 * 120.00035 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92658 * 180.29712 * 5 4 3 33 33 H 1.08994 * 109.46971 * 149.73360 * 7 6 5 34 34 H 1.08993 * 109.47431 * 29.73108 * 7 6 5 35 35 H 0.97002 * 120.00030 * 0.02562 * 8 7 6 36 36 H 1.09002 * 109.47153 * 299.99793 * 13 11 9 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 38 38 H 1.09004 * 109.47261 * 59.99965 * 13 11 9 39 39 H 1.09007 * 109.47204 * 300.00198 * 15 14 11 40 40 H 1.09004 * 109.47390 * 59.99926 * 15 14 11 41 41 H 0.96995 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00041 * 180.24688 * 24 6 5 43 43 H 1.09004 * 109.46979 * 59.99973 * 27 26 25 44 44 H 1.08995 * 109.46897 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.47391 * 300.00518 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0066 6 6 3.3029 3.6798 0.0009 7 6 3.9836 5.0244 0.0013 8 7 4.2040 5.4606 -1.3797 9 6 4.8029 6.6427 -1.6257 10 8 5.1599 7.3450 -0.7036 11 6 5.0291 7.0916 -3.0463 12 1 5.2505 6.2257 -3.6701 13 6 3.7703 7.7876 -3.5678 14 16 6.4257 8.2481 -3.0999 15 6 6.6377 8.5500 -4.8759 16 6 7.7803 9.5091 -5.0896 17 1 8.3247 9.8978 -4.2418 18 6 8.1312 9.8895 -6.3676 19 7 7.4686 9.4158 -7.4000 20 14 9.5480 11.0778 -6.6324 21 1 10.7949 10.4931 -6.0770 22 1 9.7215 11.3250 -8.0864 23 1 9.2535 12.3605 -5.9445 24 6 4.0603 2.5233 0.0002 25 6 3.4359 1.2864 -0.0001 26 8 4.1795 0.1477 -0.0013 27 6 5.6003 0.3007 -0.0027 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2146 2.3196 0.0014 32 1 1.3342 4.5114 0.0119 33 1 4.9417 4.9463 0.5150 34 1 3.3538 5.7503 0.5155 35 1 3.9189 4.8987 -2.1172 36 1 2.9312 7.0927 -3.5356 37 1 3.9342 8.1128 -4.5952 38 1 3.5491 8.6537 -2.9439 39 1 6.8537 7.6086 -5.3813 40 1 5.7224 8.9794 -5.2833 41 1 7.7152 9.6836 -8.2990 42 1 5.1386 2.5840 -0.0003 43 1 5.9074 0.8502 0.8873 44 1 6.0715 -0.6821 -0.0030 45 1 5.9056 0.8508 -0.8926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = -91.241899 kcal Electronic energy + Delta-G solvation = -25910.055742 eV Core-core repulsion = 22019.649530 eV Total energy + Delta-G solvation = -3890.406211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00219 -39.55878 -38.81211 -37.59993 -34.59682 -33.20315 -32.88818 -30.93461 -30.73944 -28.50428 -28.11356 -27.60809 -25.95224 -23.94698 -23.08856 -22.58461 -21.70039 -20.40450 -18.87667 -17.66631 -17.21159 -16.93970 -16.61797 -16.42338 -16.11637 -15.60597 -15.14993 -15.14447 -15.07741 -14.86673 -14.47525 -14.39454 -13.82869 -13.62779 -13.31732 -13.00449 -12.93361 -12.51785 -12.39076 -12.33940 -12.31356 -11.98795 -11.68218 -11.57670 -11.55212 -11.53802 -11.45226 -11.34402 -10.83304 -10.70204 -9.88676 -9.71448 -9.55008 -9.14471 -9.08994 -8.72928 -8.59704 -8.18685 -6.64405 -6.18602 -4.22227 0.81438 0.97747 2.30958 2.85181 2.86917 2.91107 3.12937 3.29874 3.32463 3.37464 3.56027 3.87664 4.27494 4.35762 4.37062 4.55087 4.68086 4.75122 4.78232 4.86613 4.89622 4.92458 4.96767 5.08869 5.15994 5.18597 5.20523 5.22063 5.35827 5.37896 5.55141 5.70533 5.75648 5.83097 6.01042 6.17840 6.23880 6.33971 6.37932 6.64805 7.09415 7.11966 7.17651 7.47432 7.76421 8.02784 8.32118 8.79530 9.40583 10.92761 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.001922 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.768546 B =14566.437763 C =14882.250428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.104 3.896 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.102 4.102 7 C 0.166 3.834 8 N -0.729 5.729 9 C 0.538 3.462 10 O -0.516 6.516 11 C -0.096 4.096 12 H 0.096 0.904 13 C -0.137 4.137 14 S -0.238 6.238 15 C 0.078 3.922 16 C -0.511 4.511 17 H 0.067 0.933 18 C 0.065 3.935 19 N -0.894 5.894 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.153 4.153 25 C 0.098 3.902 26 O -0.307 6.307 27 C 0.024 3.976 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.139 0.861 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 -20.278 14.371 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.059 3.941 4 C -0.193 4.193 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.043 3.957 8 N -0.384 5.384 9 C 0.323 3.677 10 O -0.390 6.390 11 C -0.228 4.228 12 H 0.114 0.886 13 C -0.196 4.196 14 S -0.011 6.011 15 C -0.069 4.069 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.172 4.172 25 C 0.052 3.948 26 O -0.221 6.221 27 C -0.071 4.071 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.168 -19.734 15.722 28.937 hybrid contribution -0.187 -0.013 -1.723 1.734 sum -14.355 -19.747 13.998 28.142 Atomic orbital electron populations 1.23092 0.78434 1.04097 1.01325 1.86183 1.21122 1.25886 1.88841 1.18315 0.89177 0.85309 1.01340 1.21068 1.00085 0.91334 1.06840 1.20825 0.93668 0.97332 0.99606 1.19585 0.93497 0.94188 1.03048 1.20094 1.00263 0.91371 0.83975 1.46032 1.62924 1.21267 1.08141 1.20020 0.76612 0.80496 0.90563 1.90719 1.49030 1.53600 1.45695 1.23154 1.01123 1.02512 0.95982 0.88591 1.21948 0.94198 1.00543 1.02907 1.87157 1.37873 1.57810 1.18303 1.21167 1.00727 1.00071 0.84938 1.20613 1.15010 1.26631 0.92752 0.91494 1.24955 0.97035 0.96429 0.95430 1.69938 1.40555 1.43998 0.98692 0.86404 0.82058 0.81152 0.77001 1.19909 1.21101 1.19873 1.21043 1.00649 0.90427 1.05059 1.18218 0.88274 0.86147 1.02115 1.86172 1.18877 1.28060 1.88971 1.23114 0.78316 1.04067 1.01567 0.88142 0.92639 0.92567 0.84530 0.85142 0.90624 0.90469 0.76499 0.92583 0.90590 0.91086 0.94796 0.94399 0.92489 0.84337 0.92548 0.88058 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.00 10.28 -34.24 -0.35 -3.35 16 3 C 0.10 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.17 -1.38 9.04 -39.46 -0.36 -1.74 16 5 C -0.10 -0.77 9.69 -39.58 -0.38 -1.15 16 6 C -0.10 -0.92 5.25 -104.61 -0.55 -1.47 16 7 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 8 N -0.73 -8.52 5.55 -61.47 -0.34 -8.86 16 9 C 0.54 8.67 6.95 -10.99 -0.08 8.59 16 10 O -0.52 -10.30 16.14 5.55 0.09 -10.21 16 11 C -0.10 -1.63 3.18 -27.88 -0.09 -1.72 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 C -0.14 -2.08 9.08 37.16 0.34 -1.74 16 14 S -0.24 -5.41 20.38 -107.50 -2.19 -7.60 16 15 C 0.08 2.01 5.39 36.01 0.19 2.21 16 16 C -0.51 -14.48 9.13 -34.44 -0.31 -14.80 16 17 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 20 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.15 -1.40 8.69 -39.46 -0.34 -1.74 16 25 C 0.10 1.01 6.70 -39.12 -0.26 0.75 16 26 O -0.31 -3.22 10.28 -34.25 -0.35 -3.57 16 27 C 0.02 0.17 9.81 101.05 0.99 1.16 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.24 7.67 -51.92 -0.40 -0.16 16 31 H 0.14 0.75 6.30 -52.48 -0.33 0.42 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.40 3.85 8.46 -40.82 -0.35 3.50 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.25 6.92 -51.93 -0.36 0.89 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.04 1.00 7.14 -51.92 -0.37 0.63 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 43 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -34.49 392.31 -8.43 -42.92 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.67 Total: -0.30 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.25 Total: -6.33 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.40 Total: -33.94 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.61 Total: -17.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -2.19 Total: -7.60 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.49 -8.43 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.321 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds