Wall clock time and date at job start Tue Mar 31 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99729 * 2 1 4 4 C 1.38559 * 120.07403 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99727 * 179.70807 * 4 3 2 6 6 C 1.38250 * 120.14490 * 0.54353 * 5 4 3 7 7 C 1.50704 * 119.92403 * 179.72701 * 6 5 4 8 8 N 1.46500 * 109.47163 * 269.73043 * 7 6 5 9 9 C 1.34775 * 120.00463 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00345 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.46924 * 324.99449 * 11 9 8 13 13 C 1.52997 * 109.47078 * 85.00196 * 11 9 8 14 14 S 1.81399 * 109.47054 * 205.00158 * 11 9 8 15 15 C 1.81394 * 103.00187 * 174.99971 * 14 11 9 16 16 C 1.50704 * 109.47240 * 179.97438 * 15 14 11 17 17 H 1.07990 * 120.00226 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99794 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00220 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99865 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47270 * 59.99868 * 20 18 16 22 22 H 1.48499 * 109.47286 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47279 * 300.00048 * 20 18 16 24 24 C 1.38241 * 120.14821 * 359.46083 * 6 5 4 25 25 C 1.38558 * 119.99670 * 0.26268 * 24 6 5 26 26 O 1.36002 * 120.07243 * 179.97438 * 25 24 6 27 27 C 1.42896 * 116.99855 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47437 * 299.99863 * 1 2 3 30 30 H 1.09007 * 109.47009 * 60.00236 * 1 2 3 31 31 H 1.08004 * 120.00035 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92658 * 180.29712 * 5 4 3 33 33 H 1.08994 * 109.46971 * 149.73360 * 7 6 5 34 34 H 1.08993 * 109.47431 * 29.73108 * 7 6 5 35 35 H 0.97002 * 120.00030 * 0.02562 * 8 7 6 36 36 H 1.09002 * 109.47153 * 299.99793 * 13 11 9 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 38 38 H 1.09004 * 109.47261 * 59.99965 * 13 11 9 39 39 H 1.09007 * 109.47204 * 300.00198 * 15 14 11 40 40 H 1.09004 * 109.47390 * 59.99926 * 15 14 11 41 41 H 0.96995 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00041 * 180.24688 * 24 6 5 43 43 H 1.09004 * 109.46979 * 59.99973 * 27 26 25 44 44 H 1.08995 * 109.46897 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.47391 * 300.00518 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0066 6 6 3.3029 3.6798 0.0009 7 6 3.9836 5.0244 0.0013 8 7 4.2040 5.4606 -1.3797 9 6 4.8029 6.6427 -1.6257 10 8 5.1599 7.3450 -0.7036 11 6 5.0291 7.0916 -3.0463 12 1 5.2505 6.2257 -3.6701 13 6 3.7703 7.7876 -3.5678 14 16 6.4257 8.2481 -3.0999 15 6 6.6377 8.5500 -4.8759 16 6 7.7803 9.5091 -5.0896 17 1 8.3247 9.8978 -4.2418 18 6 8.1312 9.8895 -6.3676 19 7 7.4686 9.4158 -7.4000 20 14 9.5480 11.0778 -6.6324 21 1 10.7949 10.4931 -6.0770 22 1 9.7215 11.3250 -8.0864 23 1 9.2535 12.3605 -5.9445 24 6 4.0603 2.5233 0.0002 25 6 3.4359 1.2864 -0.0001 26 8 4.1795 0.1477 -0.0013 27 6 5.6003 0.3007 -0.0027 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2146 2.3196 0.0014 32 1 1.3342 4.5114 0.0119 33 1 4.9417 4.9463 0.5150 34 1 3.3538 5.7503 0.5155 35 1 3.9189 4.8987 -2.1172 36 1 2.9312 7.0927 -3.5356 37 1 3.9342 8.1128 -4.5952 38 1 3.5491 8.6537 -2.9439 39 1 6.8537 7.6086 -5.3813 40 1 5.7224 8.9794 -5.2833 41 1 7.7152 9.6836 -8.2990 42 1 5.1386 2.5840 -0.0003 43 1 5.9074 0.8502 0.8873 44 1 6.0715 -0.6821 -0.0030 45 1 5.9056 0.8508 -0.8926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:54 Heat of formation + Delta-G solvation = -113.532268 kcal Electronic energy + Delta-G solvation = -25911.022325 eV Core-core repulsion = 22019.649530 eV Total energy + Delta-G solvation = -3891.372794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66796 -40.77126 -39.43949 -38.34502 -35.65741 -35.28725 -34.23250 -31.73235 -31.36428 -30.60433 -28.76284 -28.09552 -26.80818 -25.22414 -25.08530 -23.20497 -22.41256 -21.63621 -19.54824 -18.89050 -18.30015 -17.96939 -17.80789 -17.58564 -17.05340 -16.74741 -16.30883 -16.16451 -16.12234 -15.73893 -15.47216 -15.34427 -14.95353 -14.68421 -14.63892 -14.40640 -14.24754 -13.83118 -13.57031 -13.38453 -13.23412 -13.00668 -12.96690 -12.87342 -12.68428 -12.54523 -12.18671 -12.09275 -12.07947 -11.96905 -11.82522 -11.58316 -10.98940 -10.72583 -10.55641 -10.19307 -9.77541 -8.86439 -8.48684 -8.32348 -6.44473 0.13036 0.31643 0.74455 1.40737 1.43590 1.51802 1.57462 1.99221 2.15435 2.32516 2.32975 2.37994 2.73221 3.02242 3.53856 3.71877 3.76625 3.88346 4.01438 4.04386 4.07888 4.28112 4.32440 4.36860 4.41901 4.42610 4.53561 4.60290 4.63512 4.71064 4.72638 4.76484 4.77265 4.96081 4.96604 5.03733 5.15064 5.21280 5.30937 5.50386 5.58245 5.62687 5.91435 6.06943 6.41064 6.56767 6.61759 7.12462 7.22779 8.79206 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.001922 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.768546 B =14566.437763 C =14882.250428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.091 3.909 4 C -0.170 4.170 5 C -0.091 4.091 6 C -0.106 4.106 7 C 0.170 3.830 8 N -0.706 5.706 9 C 0.543 3.457 10 O -0.559 6.559 11 C -0.084 4.084 12 H 0.116 0.884 13 C -0.131 4.131 14 S -0.276 6.276 15 C 0.090 3.910 16 C -0.538 4.538 17 H 0.057 0.943 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.268 1.268 24 C -0.153 4.153 25 C 0.076 3.924 26 O -0.330 6.330 27 C 0.018 3.982 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.024 0.976 41 H 0.271 0.729 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.255 -20.911 14.632 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.045 3.955 4 C -0.189 4.189 5 C -0.110 4.110 6 C -0.107 4.107 7 C 0.047 3.953 8 N -0.359 5.359 9 C 0.328 3.672 10 O -0.437 6.437 11 C -0.216 4.216 12 H 0.134 0.866 13 C -0.190 4.190 14 S -0.049 6.049 15 C -0.057 4.057 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.797 3.203 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.193 1.193 24 C -0.172 4.172 25 C 0.031 3.969 26 O -0.244 6.244 27 C -0.076 4.076 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.251 0.749 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.162 0.838 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.422 -20.411 15.973 30.159 hybrid contribution 0.064 0.022 -1.737 1.739 sum -15.357 -20.389 14.235 29.227 Atomic orbital electron populations 1.23375 0.76369 1.05552 1.02466 1.86149 1.23401 1.26227 1.88867 1.18630 0.89403 0.86049 1.01416 1.21332 1.01285 0.90512 1.05736 1.21056 0.93335 0.98157 0.98436 1.19441 0.93931 0.93120 1.04195 1.20127 1.00266 0.92200 0.82710 1.45852 1.60923 1.19589 1.09552 1.19769 0.76787 0.81338 0.89349 1.90711 1.51249 1.55216 1.46524 1.23231 0.99170 1.01606 0.97620 0.86554 1.21894 0.94610 1.01088 1.01448 1.87125 1.41886 1.60333 1.15591 1.20812 0.99359 0.98598 0.86926 1.20930 1.16081 1.27698 0.93007 0.92432 1.25845 0.99568 0.97950 0.95008 1.70028 1.41859 1.44927 0.99168 0.85372 0.78704 0.78821 0.77415 1.19299 1.19897 1.19339 1.21112 1.01062 0.90260 1.04811 1.18488 0.88872 0.86406 1.03150 1.86135 1.20399 1.28687 1.89219 1.23310 0.76935 1.05301 1.02047 0.86732 0.91351 0.91434 0.82042 0.83295 0.91256 0.90071 0.74883 0.88199 0.92121 0.92102 0.96458 0.95824 0.92042 0.83778 0.91834 0.86502 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.15 10.28 -79.67 -0.82 -6.97 16 3 C 0.09 1.68 6.70 22.57 0.15 1.83 16 4 C -0.17 -2.27 9.04 22.35 0.20 -2.07 16 5 C -0.09 -1.22 9.69 22.27 0.22 -1.00 16 6 C -0.11 -1.69 5.25 -19.86 -0.10 -1.79 16 7 C 0.17 3.19 5.80 85.63 0.50 3.68 16 8 N -0.71 -14.89 5.55 -466.80 -2.59 -17.48 16 9 C 0.54 16.74 6.95 87.66 0.61 17.35 16 10 O -0.56 -22.06 16.14 -3.05 -0.05 -22.11 16 11 C -0.08 -2.79 3.18 29.85 0.09 -2.69 16 12 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 13 C -0.13 -3.80 9.08 71.98 0.65 -3.14 16 14 S -0.28 -12.74 20.38 -56.49 -1.15 -13.89 16 15 C 0.09 4.80 5.39 71.24 0.38 5.18 16 16 C -0.54 -31.17 9.13 25.60 0.23 -30.94 16 17 H 0.06 3.37 7.71 -2.92 -0.02 3.34 16 18 C 0.02 0.98 5.46 84.66 0.46 1.44 16 19 N -0.92 -53.61 13.29 21.45 0.28 -53.32 16 20 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C -0.15 -2.63 8.69 22.35 0.19 -2.43 16 25 C 0.08 1.52 6.70 22.57 0.15 1.67 16 26 O -0.33 -6.85 10.28 -79.71 -0.82 -7.67 16 27 C 0.02 0.24 9.81 113.37 1.11 1.35 16 28 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 30 H 0.07 0.41 7.67 -2.38 -0.02 0.40 16 31 H 0.16 1.24 6.30 -2.91 -0.02 1.22 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.08 1.52 8.08 -2.39 -0.02 1.51 16 35 H 0.41 6.70 8.46 -92.71 -0.78 5.91 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.96 6.92 -2.39 -0.02 1.94 16 38 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.02 1.29 7.14 -2.39 -0.02 1.27 16 41 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.14 2.18 6.30 -2.91 -0.02 2.16 16 43 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 Total: -1.00 -76.01 392.31 3.07 -72.93 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.22 Total: 12.74 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.97 Total: -10.30 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -2.30 Total: -70.80 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.69 Total: -36.75 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -12.74 SS G_CDS: -1.15 Total: -13.89 kcal Total: -76.01 3.07 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.597 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds