Wall clock time and date at job start Tue Mar 31 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 116.99972 * 2 1 4 4 C 1.38561 * 120.07301 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99823 * 179.70490 * 4 3 2 6 6 C 1.38247 * 120.14278 * 0.55074 * 5 4 3 7 7 C 1.50706 * 119.92660 * 179.72385 * 6 5 4 8 8 N 1.46505 * 109.47014 * 269.72633 * 7 6 5 9 9 C 1.34770 * 119.99664 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00359 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99651 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47125 * 40.00062 * 11 9 8 13 13 C 1.53002 * 109.47281 * 279.99879 * 11 9 8 14 14 S 1.81400 * 109.47066 * 159.99943 * 11 9 8 15 15 C 1.81394 * 103.00060 * 184.99968 * 14 11 9 16 16 C 1.50703 * 109.47267 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99716 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99898 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47328 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47027 * 119.99899 * 20 18 16 23 23 H 1.48503 * 109.46764 * 239.99395 * 20 18 16 24 24 C 1.38243 * 120.14948 * 359.44602 * 6 5 4 25 25 C 1.38563 * 119.99972 * 0.28195 * 24 6 5 26 26 O 1.35987 * 120.07439 * 179.97438 * 25 24 6 27 27 C 1.42899 * 117.00379 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46923 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.46538 * 60.00087 * 1 2 3 30 30 H 1.08995 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00039 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.92862 * 180.29781 * 5 4 3 33 33 H 1.09000 * 109.46646 * 29.71959 * 7 6 5 34 34 H 1.09000 * 109.47248 * 149.72676 * 7 6 5 35 35 H 0.97000 * 120.00105 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.46640 * 60.00369 * 13 11 9 37 37 H 1.08999 * 109.46995 * 179.97438 * 13 11 9 38 38 H 1.08999 * 109.47191 * 300.00143 * 13 11 9 39 39 H 1.08997 * 109.47476 * 299.99822 * 15 14 11 40 40 H 1.08997 * 109.47399 * 60.00363 * 15 14 11 41 41 H 0.97001 * 119.99857 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.00101 * 180.24895 * 24 6 5 43 43 H 1.09004 * 109.46536 * 300.00191 * 27 26 25 44 44 H 1.09003 * 109.47004 * 59.99552 * 27 26 25 45 45 H 1.08995 * 109.47857 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6058 0.0067 6 6 3.3030 3.6798 0.0009 7 6 3.9838 5.0243 0.0013 8 7 4.2042 5.4605 -1.3798 9 6 4.8023 6.6430 -1.6256 10 8 5.1585 7.3457 -0.7035 11 6 5.0296 7.0914 -3.0463 12 1 4.1601 6.8354 -3.6516 13 6 6.2677 6.3914 -3.6102 14 16 5.2824 8.8874 -3.0803 15 6 5.3826 9.2518 -4.8545 16 6 5.5961 10.7305 -5.0523 17 1 5.6650 11.3854 -4.1963 18 6 5.7034 11.2472 -6.3261 19 7 5.6199 10.4496 -7.3684 20 14 5.9687 13.0800 -6.5713 21 1 6.0274 13.7529 -5.2488 22 1 7.2446 13.3026 -7.2975 23 1 4.8443 13.6413 -7.3624 24 6 4.0603 2.5233 0.0004 25 6 3.4360 1.2863 -0.0002 26 8 4.1796 0.1477 -0.0012 27 6 5.6003 0.3006 -0.0022 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2147 2.3196 0.0005 32 1 1.3344 4.5115 0.0120 33 1 3.3539 5.7503 0.5154 34 1 4.9420 4.9462 0.5150 35 1 3.9197 4.8983 -2.1173 36 1 6.1157 5.3122 -3.5898 37 1 6.4318 6.7154 -4.6379 38 1 7.1372 6.6474 -3.0049 39 1 6.2167 8.7031 -5.2916 40 1 4.4547 8.9502 -5.3404 41 1 5.6958 10.8131 -8.2645 42 1 5.1386 2.5839 -0.0001 43 1 5.9058 0.8507 -0.8923 44 1 5.9073 0.8501 0.8877 45 1 6.0716 -0.6822 -0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:58 Heat of formation + Delta-G solvation = -91.115507 kcal Electronic energy + Delta-G solvation = -25906.504847 eV Core-core repulsion = 22016.104117 eV Total energy + Delta-G solvation = -3890.400731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01013 -39.56138 -38.82467 -37.60523 -34.60034 -33.20666 -32.90322 -30.93026 -30.74430 -28.50186 -28.11373 -27.62862 -25.94417 -23.96498 -23.08883 -22.59660 -21.70863 -20.40060 -18.88555 -17.68465 -17.18631 -16.95573 -16.61652 -16.43240 -16.12050 -15.62178 -15.20125 -15.15166 -15.07440 -14.87029 -14.46137 -14.32169 -13.94458 -13.58578 -13.30996 -13.01240 -12.92581 -12.51625 -12.41147 -12.36240 -12.31437 -12.00030 -11.68168 -11.59229 -11.57324 -11.51800 -11.46324 -11.35245 -10.88015 -10.65609 -9.88676 -9.69523 -9.52696 -9.14984 -9.09070 -8.71557 -8.60758 -8.19304 -6.63605 -6.18810 -4.22136 0.80864 0.97492 2.33692 2.84282 2.85362 2.88828 3.12240 3.26318 3.33526 3.40733 3.55865 3.88409 4.26483 4.36087 4.37174 4.55174 4.66734 4.75679 4.76799 4.82398 4.89004 4.92205 4.96400 5.09345 5.15657 5.16215 5.18675 5.21738 5.34740 5.37703 5.55473 5.69631 5.73921 5.83801 6.00058 6.17858 6.23337 6.33086 6.37229 6.63722 7.09928 7.12190 7.16637 7.47290 7.76915 8.03024 8.32140 8.80312 9.40831 10.92681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.001878 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.605360 B =14905.632192 C =15133.526157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.105 3.895 4 C -0.174 4.174 5 C -0.094 4.094 6 C -0.103 4.103 7 C 0.166 3.834 8 N -0.730 5.730 9 C 0.538 3.462 10 O -0.515 6.515 11 C -0.097 4.097 12 H 0.097 0.903 13 C -0.137 4.137 14 S -0.236 6.236 15 C 0.076 3.924 16 C -0.509 4.509 17 H 0.068 0.932 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.153 4.153 25 C 0.097 3.903 26 O -0.307 6.307 27 C 0.025 3.975 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.401 0.599 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.138 0.862 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -24.365 14.302 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.059 3.941 4 C -0.193 4.193 5 C -0.113 4.113 6 C -0.103 4.103 7 C 0.043 3.957 8 N -0.384 5.384 9 C 0.323 3.677 10 O -0.389 6.389 11 C -0.229 4.229 12 H 0.116 0.884 13 C -0.196 4.196 14 S -0.009 6.009 15 C -0.071 4.071 16 C -0.548 4.548 17 H 0.086 0.914 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.172 4.172 25 C 0.052 3.948 26 O -0.221 6.221 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.156 0.844 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.373 -23.541 15.671 29.226 hybrid contribution -0.238 0.001 -1.752 1.768 sum -7.611 -23.540 13.919 28.387 Atomic orbital electron populations 1.23094 0.78398 1.04102 1.01368 1.86179 1.21153 1.25883 1.88839 1.18318 0.89174 0.85315 1.01312 1.21082 1.00134 0.91322 1.06737 1.20852 0.93708 0.97399 0.99374 1.19586 0.93517 0.94172 1.03063 1.20097 1.00206 0.91420 0.83973 1.46021 1.62918 1.21309 1.08130 1.20021 0.76740 0.80401 0.90572 1.90720 1.49153 1.53388 1.45687 1.23171 1.02601 1.01152 0.95961 0.88444 1.21954 0.96134 0.98847 1.02683 1.87181 1.95978 0.99670 1.18082 1.21180 1.00012 1.00770 0.85129 1.20698 1.50654 0.90779 0.92699 0.91379 1.24960 0.94789 0.98749 0.95412 1.69959 1.49660 1.35184 0.98388 0.86296 0.77820 0.84102 0.78466 1.19362 1.20748 1.20774 1.21018 1.00545 0.90424 1.05227 1.18207 0.88265 0.86117 1.02249 1.86170 1.18812 1.28089 1.89009 1.23104 0.78414 1.04021 1.01479 0.92617 0.92539 0.88136 0.84491 0.85051 0.90384 0.90708 0.76506 0.92629 0.90581 0.91143 0.94425 0.94786 0.92611 0.84420 0.92491 0.92575 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.99 10.28 -34.24 -0.35 -3.34 16 3 C 0.10 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.17 -1.40 9.04 -39.46 -0.36 -1.76 16 5 C -0.09 -0.78 9.69 -39.57 -0.38 -1.17 16 6 C -0.10 -0.91 5.25 -104.61 -0.55 -1.46 16 7 C 0.17 1.71 5.80 -5.19 -0.03 1.68 16 8 N -0.73 -8.47 5.55 -61.47 -0.34 -8.81 16 9 C 0.54 8.65 7.00 -10.99 -0.08 8.57 16 10 O -0.52 -10.29 16.05 5.56 0.09 -10.20 16 11 C -0.10 -1.65 3.18 -27.88 -0.09 -1.74 16 12 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 13 C -0.14 -2.06 9.08 37.16 0.34 -1.72 16 14 S -0.24 -5.36 20.32 -107.50 -2.18 -7.55 16 15 C 0.08 1.97 5.39 36.01 0.19 2.16 16 16 C -0.51 -14.45 9.13 -34.44 -0.31 -14.76 16 17 H 0.07 1.96 7.71 -52.48 -0.40 1.55 16 18 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 20 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.15 -1.35 8.69 -39.46 -0.34 -1.69 16 25 C 0.10 0.98 6.70 -39.12 -0.26 0.72 16 26 O -0.31 -3.11 10.28 -34.20 -0.35 -3.46 16 27 C 0.02 0.16 9.81 101.05 0.99 1.15 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.40 3.82 8.46 -40.82 -0.35 3.47 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.24 6.92 -51.93 -0.36 0.88 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.99 7.14 -51.93 -0.37 0.62 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.14 1.02 6.30 -52.49 -0.33 0.69 16 43 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 44 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -34.61 392.22 -8.43 -43.04 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.67 Total: -0.55 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.25 Total: -6.42 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.40 Total: -33.91 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.61 Total: -17.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.18 Total: -7.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.61 -8.43 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.074 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds