Wall clock time and date at job start Tue Mar 31 2020 22:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 116.99972 * 2 1 4 4 C 1.38561 * 120.07301 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99823 * 179.70490 * 4 3 2 6 6 C 1.38247 * 120.14278 * 0.55074 * 5 4 3 7 7 C 1.50706 * 119.92660 * 179.72385 * 6 5 4 8 8 N 1.46505 * 109.47014 * 269.72633 * 7 6 5 9 9 C 1.34770 * 119.99664 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00359 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99651 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47125 * 40.00062 * 11 9 8 13 13 C 1.53002 * 109.47281 * 279.99879 * 11 9 8 14 14 S 1.81400 * 109.47066 * 159.99943 * 11 9 8 15 15 C 1.81394 * 103.00060 * 184.99968 * 14 11 9 16 16 C 1.50703 * 109.47267 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99716 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99898 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47328 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47027 * 119.99899 * 20 18 16 23 23 H 1.48503 * 109.46764 * 239.99395 * 20 18 16 24 24 C 1.38243 * 120.14948 * 359.44602 * 6 5 4 25 25 C 1.38563 * 119.99972 * 0.28195 * 24 6 5 26 26 O 1.35987 * 120.07439 * 179.97438 * 25 24 6 27 27 C 1.42899 * 117.00379 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46923 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.46538 * 60.00087 * 1 2 3 30 30 H 1.08995 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00039 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.92862 * 180.29781 * 5 4 3 33 33 H 1.09000 * 109.46646 * 29.71959 * 7 6 5 34 34 H 1.09000 * 109.47248 * 149.72676 * 7 6 5 35 35 H 0.97000 * 120.00105 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.46640 * 60.00369 * 13 11 9 37 37 H 1.08999 * 109.46995 * 179.97438 * 13 11 9 38 38 H 1.08999 * 109.47191 * 300.00143 * 13 11 9 39 39 H 1.08997 * 109.47476 * 299.99822 * 15 14 11 40 40 H 1.08997 * 109.47399 * 60.00363 * 15 14 11 41 41 H 0.97001 * 119.99857 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.00101 * 180.24895 * 24 6 5 43 43 H 1.09004 * 109.46536 * 300.00191 * 27 26 25 44 44 H 1.09003 * 109.47004 * 59.99552 * 27 26 25 45 45 H 1.08995 * 109.47857 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6058 0.0067 6 6 3.3030 3.6798 0.0009 7 6 3.9838 5.0243 0.0013 8 7 4.2042 5.4605 -1.3798 9 6 4.8023 6.6430 -1.6256 10 8 5.1585 7.3457 -0.7035 11 6 5.0296 7.0914 -3.0463 12 1 4.1601 6.8354 -3.6516 13 6 6.2677 6.3914 -3.6102 14 16 5.2824 8.8874 -3.0803 15 6 5.3826 9.2518 -4.8545 16 6 5.5961 10.7305 -5.0523 17 1 5.6650 11.3854 -4.1963 18 6 5.7034 11.2472 -6.3261 19 7 5.6199 10.4496 -7.3684 20 14 5.9687 13.0800 -6.5713 21 1 6.0274 13.7529 -5.2488 22 1 7.2446 13.3026 -7.2975 23 1 4.8443 13.6413 -7.3624 24 6 4.0603 2.5233 0.0004 25 6 3.4360 1.2863 -0.0002 26 8 4.1796 0.1477 -0.0012 27 6 5.6003 0.3006 -0.0022 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2147 2.3196 0.0005 32 1 1.3344 4.5115 0.0120 33 1 3.3539 5.7503 0.5154 34 1 4.9420 4.9462 0.5150 35 1 3.9197 4.8983 -2.1173 36 1 6.1157 5.3122 -3.5898 37 1 6.4318 6.7154 -4.6379 38 1 7.1372 6.6474 -3.0049 39 1 6.2167 8.7031 -5.2916 40 1 4.4547 8.9502 -5.3404 41 1 5.6958 10.8131 -8.2645 42 1 5.1386 2.5839 -0.0001 43 1 5.9058 0.8507 -0.8923 44 1 5.9073 0.8501 0.8877 45 1 6.0716 -0.6822 -0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:57 Heat of formation + Delta-G solvation = -113.502571 kcal Electronic energy + Delta-G solvation = -25907.475623 eV Core-core repulsion = 22016.104117 eV Total energy + Delta-G solvation = -3891.371507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66723 -40.77096 -39.43652 -38.34251 -35.66363 -35.28784 -34.24236 -31.72418 -31.36068 -30.60383 -28.74977 -28.08827 -26.80064 -25.22928 -25.09955 -23.20630 -22.41451 -21.62850 -19.54871 -18.89060 -18.31052 -17.91885 -17.82203 -17.59518 -17.04946 -16.74468 -16.35011 -16.15906 -16.11206 -15.73742 -15.42547 -15.32621 -14.96420 -14.80514 -14.53375 -14.42189 -14.25083 -13.83123 -13.56596 -13.38681 -13.23736 -13.01582 -12.94378 -12.88409 -12.70885 -12.54086 -12.17757 -12.08784 -12.08309 -11.96923 -11.80708 -11.55982 -10.98538 -10.73541 -10.54229 -10.19304 -9.77439 -8.86333 -8.48056 -8.32756 -6.44597 0.13077 0.31469 0.76783 1.40103 1.40769 1.53871 1.56650 1.99656 2.15754 2.32693 2.33313 2.37862 2.73178 3.01937 3.53936 3.72455 3.76566 3.88736 4.01207 4.04184 4.07908 4.29470 4.32255 4.39069 4.41492 4.41885 4.53646 4.60145 4.62852 4.71097 4.74216 4.76094 4.77353 4.96209 4.96773 5.03199 5.14678 5.21203 5.31077 5.50499 5.58670 5.62046 5.91597 6.07373 6.41336 6.57022 6.62223 7.12815 7.22848 8.79273 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.001878 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.605360 B =14905.632192 C =15133.526157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.095 4.095 6 C -0.106 4.106 7 C 0.170 3.830 8 N -0.706 5.706 9 C 0.542 3.458 10 O -0.559 6.559 11 C -0.085 4.085 12 H 0.118 0.882 13 C -0.132 4.132 14 S -0.275 6.275 15 C 0.089 3.911 16 C -0.536 4.536 17 H 0.057 0.943 18 C 0.017 3.983 19 N -0.922 5.922 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.150 4.150 25 C 0.078 3.922 26 O -0.330 6.330 27 C 0.018 3.982 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.023 0.977 40 H 0.017 0.983 41 H 0.270 0.730 42 H 0.149 0.851 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 -25.248 14.501 30.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.045 3.955 4 C -0.190 4.190 5 C -0.113 4.113 6 C -0.106 4.106 7 C 0.047 3.953 8 N -0.359 5.359 9 C 0.327 3.673 10 O -0.437 6.437 11 C -0.217 4.217 12 H 0.136 0.864 13 C -0.191 4.191 14 S -0.048 6.048 15 C -0.058 4.058 16 C -0.575 4.575 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.798 3.202 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.169 4.169 25 C 0.033 3.967 26 O -0.244 6.244 27 C -0.077 4.077 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.167 0.833 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.125 -24.472 15.858 30.272 hybrid contribution -0.078 0.080 -1.750 1.754 sum -8.203 -24.392 14.108 29.348 Atomic orbital electron populations 1.23367 0.76429 1.05550 1.02400 1.86146 1.23335 1.26204 1.88873 1.18630 0.89524 0.85940 1.01444 1.21311 1.01239 0.90586 1.05827 1.21049 0.93589 0.98051 0.98649 1.19436 0.93785 0.93259 1.04159 1.20128 1.00394 0.92059 0.82718 1.45835 1.60818 1.19706 1.09539 1.19770 0.76882 0.81270 0.89351 1.90712 1.51420 1.55009 1.46528 1.23244 1.04478 0.96385 0.97600 0.86443 1.21900 0.94715 1.01239 1.01206 1.87156 1.96190 1.06033 1.15393 1.20822 0.98348 0.99579 0.87100 1.20991 1.51549 0.92091 0.92889 0.92467 1.25847 0.94070 1.03529 0.94974 1.70042 1.49859 1.37209 0.98924 0.85260 0.78278 0.78304 0.78393 1.19320 1.19686 1.19670 1.21107 1.01160 0.89993 1.04658 1.18464 0.88753 0.86480 1.03040 1.86137 1.20501 1.28616 1.89189 1.23330 0.76829 1.05341 1.02157 0.91435 0.91543 0.86657 0.82278 0.83784 0.90647 0.90685 0.74868 0.88245 0.92128 0.92074 0.95826 0.96451 0.92056 0.83303 0.91840 0.91781 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.13 10.28 -79.68 -0.82 -6.95 16 3 C 0.09 1.67 6.70 22.57 0.15 1.82 16 4 C -0.17 -2.40 9.04 22.35 0.20 -2.20 16 5 C -0.09 -1.36 9.69 22.27 0.22 -1.14 16 6 C -0.11 -1.67 5.25 -19.86 -0.10 -1.77 16 7 C 0.17 3.17 5.80 85.63 0.50 3.67 16 8 N -0.71 -14.77 5.55 -466.77 -2.59 -17.36 16 9 C 0.54 16.70 7.00 87.66 0.61 17.31 16 10 O -0.56 -22.08 16.05 -3.03 -0.05 -22.13 16 11 C -0.09 -2.81 3.18 29.85 0.09 -2.71 16 12 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 13 C -0.13 -3.77 9.08 71.98 0.65 -3.12 16 14 S -0.27 -12.68 20.32 -56.49 -1.15 -13.83 16 15 C 0.09 4.72 5.39 71.24 0.38 5.10 16 16 C -0.54 -31.11 9.13 25.60 0.23 -30.88 16 17 H 0.06 3.37 7.71 -2.91 -0.02 3.35 16 18 C 0.02 0.95 5.46 84.66 0.46 1.41 16 19 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 20 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 C -0.15 -2.40 8.69 22.35 0.19 -2.21 16 25 C 0.08 1.49 6.70 22.57 0.15 1.64 16 26 O -0.33 -6.46 10.28 -79.54 -0.82 -7.28 16 27 C 0.02 0.20 9.81 113.37 1.11 1.31 16 28 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 32 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.41 6.61 8.46 -92.71 -0.78 5.82 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.94 6.92 -2.39 -0.02 1.93 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.02 1.29 7.14 -2.39 -0.02 1.27 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 43 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 44 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 45 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -76.14 392.22 3.08 -73.05 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.22 Total: 12.18 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.97 Total: -10.51 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -2.30 Total: -70.70 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.69 Total: -36.35 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -12.68 SS G_CDS: -1.15 Total: -13.83 kcal Total: -76.14 3.08 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.450 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds