Wall clock time and date at job start Tue Mar 31 2020 23:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46909 * 110.99954 * 2 1 4 4 C 1.50693 * 109.46798 * 66.04136 * 3 2 1 5 5 H 1.07993 * 120.00697 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99563 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00146 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00234 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.47041 * 90.00104 * 8 6 4 10 10 H 1.48496 * 109.47363 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.47087 * 330.00090 * 8 6 4 12 12 C 1.46901 * 111.00465 * 236.04705 * 2 1 3 13 13 C 1.52996 * 109.47087 * 199.85252 * 12 2 1 14 14 H 1.08998 * 109.47329 * 300.45890 * 13 12 2 15 15 O 1.42903 * 109.47313 * 60.45851 * 13 12 2 16 16 C 1.53003 * 109.47035 * 180.45968 * 13 12 2 17 17 S 1.81405 * 109.47197 * 180.02562 * 16 13 12 18 18 C 1.81404 * 102.99848 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.46882 * 179.97438 * 18 17 16 20 20 C 1.38251 * 119.93006 * 270.01832 * 19 18 17 21 21 C 1.38237 * 120.14462 * 179.74867 * 20 19 18 22 22 C 1.38542 * 120.03018 * 0.43181 * 21 20 19 23 23 C 1.39263 * 119.82349 * 359.57255 * 22 21 20 24 24 C 1.38242 * 119.92984 * 89.99609 * 19 18 17 25 25 O 1.36508 * 108.63925 * 180.25027 * 23 22 21 26 26 C 1.43984 * 105.48376 * 342.71560 * 25 23 22 27 27 O 1.36501 * 131.53218 * 179.87486 * 22 21 20 28 28 H 1.08999 * 109.47305 * 188.77526 * 1 2 3 29 29 H 1.09001 * 109.47656 * 308.78111 * 1 2 3 30 30 H 1.08999 * 109.47246 * 68.77911 * 1 2 3 31 31 H 1.08998 * 109.46686 * 186.04647 * 3 2 1 32 32 H 1.08995 * 109.46541 * 306.04273 * 3 2 1 33 33 H 0.97003 * 120.00472 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47143 * 79.84572 * 12 2 1 35 35 H 1.09002 * 109.46415 * 319.84834 * 12 2 1 36 36 H 0.96698 * 113.99903 * 60.00501 * 15 13 12 37 37 H 1.08997 * 109.47089 * 59.99655 * 16 13 12 38 38 H 1.08997 * 109.47266 * 299.99651 * 16 13 12 39 39 H 1.08995 * 109.47137 * 59.99582 * 18 17 16 40 40 H 1.08996 * 109.46927 * 299.99494 * 18 17 16 41 41 H 1.08002 * 119.92852 * 0.02562 * 20 19 18 42 42 H 1.08003 * 119.98644 * 180.32678 * 21 20 19 43 43 H 1.07995 * 119.98240 * 0.02894 * 24 19 18 44 44 H 1.09004 * 110.57190 * 268.55419 * 26 25 23 45 45 H 1.08996 * 110.57156 * 145.67847 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0471 1.2984 5 1 1.0744 1.5114 2.0487 6 6 2.0275 3.3492 1.5288 7 7 1.7150 3.9388 2.6621 8 14 3.0007 4.2758 0.2314 9 1 2.0641 4.9805 -0.6806 10 1 3.8878 5.2668 0.8918 11 1 3.8238 3.3170 -0.5487 12 6 1.9955 -0.7659 -1.1376 13 6 3.4449 -1.1666 -0.8555 14 1 4.0463 -0.2705 -0.7026 15 8 3.4945 -1.9796 0.3186 16 6 3.9969 -1.9545 -2.0452 17 16 5.7152 -2.4302 -1.7105 18 6 6.1865 -3.3381 -3.2086 19 6 7.6131 -3.8071 -3.0837 20 6 8.6455 -3.0008 -3.5256 21 6 9.9562 -3.4244 -3.4085 22 6 10.2376 -4.6632 -2.8556 23 6 9.1977 -5.4755 -2.4106 24 6 7.8868 -5.0426 -2.5272 25 8 9.7288 -6.6282 -1.9080 26 6 11.0725 -6.6883 -2.4219 27 8 11.4204 -5.3069 -2.6322 28 1 -0.3634 -1.0156 0.1568 29 1 -0.3634 0.6437 0.8011 30 1 -0.3634 0.3720 -0.9580 31 1 3.0796 1.3444 -0.1083 32 1 1.5610 1.9273 -0.8309 33 1 1.9895 4.8549 2.8241 34 1 1.9566 -0.1526 -2.0377 35 1 1.3923 -1.6623 -1.2823 36 1 2.9803 -2.7960 0.2537 37 1 3.9591 -1.3343 -2.9407 38 1 3.3955 -2.8506 -2.1981 39 1 6.0943 -2.6828 -4.0747 40 1 5.5301 -4.1993 -3.3331 41 1 8.4279 -2.0358 -3.9591 42 1 10.7610 -2.7902 -3.7497 43 1 7.0783 -5.6705 -2.1830 44 1 11.0983 -7.2373 -3.3632 45 1 11.7414 -7.1449 -1.6925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414125107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:12 Heat of formation + Delta-G solvation = -99.943365 kcal Electronic energy + Delta-G solvation = -25836.340527 eV Core-core repulsion = 21945.556992 eV Total energy + Delta-G solvation = -3890.783535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.16472 -39.39749 -39.21896 -37.32714 -37.09023 -34.58624 -33.19953 -32.28484 -31.46680 -30.06634 -28.43254 -27.91200 -26.43348 -25.33584 -24.02559 -23.40388 -22.78778 -21.64822 -19.08166 -18.96057 -18.68841 -18.38881 -17.72593 -17.16080 -17.07476 -16.63353 -16.36924 -16.11556 -15.79977 -15.63892 -15.50157 -15.11162 -14.91778 -14.88227 -14.64497 -14.38850 -14.18860 -14.03401 -13.90472 -13.53340 -13.30120 -13.21912 -12.99344 -12.92980 -12.64224 -12.51121 -12.31064 -12.12558 -11.82217 -11.79959 -11.65014 -11.48397 -10.85974 -10.80183 -10.76627 -9.88056 -9.06076 -8.94573 -8.58359 -8.27759 -6.30516 -0.19508 0.16807 0.87653 1.32167 1.36140 1.46193 1.67260 1.79031 2.34323 2.48295 2.59288 3.04329 3.15948 3.43266 3.60870 3.67208 3.76777 3.85323 3.90793 4.03887 4.05871 4.16258 4.26330 4.26402 4.35174 4.36233 4.51903 4.55633 4.58278 4.59408 4.68306 4.72843 4.93306 4.97106 4.99867 5.02910 5.10883 5.17147 5.22585 5.34136 5.43314 5.56552 5.99189 6.07150 6.39140 6.66513 6.75902 7.05246 7.32479 8.89112 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002021 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.113192 B =13854.417704 C =14583.328673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.544 5.544 3 C 0.173 3.827 4 C -0.515 4.515 5 H 0.036 0.964 6 C 0.003 3.997 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.250 1.250 12 C 0.030 3.970 13 C 0.133 3.867 14 H 0.069 0.931 15 O -0.556 6.556 16 C -0.106 4.106 17 S -0.279 6.279 18 C -0.037 4.037 19 C -0.066 4.066 20 C -0.089 4.089 21 C -0.104 4.104 22 C 0.017 3.983 23 C 0.011 3.989 24 C -0.090 4.090 25 O -0.327 6.327 26 C 0.204 3.796 27 O -0.325 6.325 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.024 0.976 32 H -0.013 1.013 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.381 0.619 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.107 0.893 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.786 -22.572 -21.393 34.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.267 5.267 3 C 0.046 3.954 4 C -0.553 4.553 5 H 0.054 0.946 6 C -0.194 4.194 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.173 1.173 12 C -0.100 4.100 13 C 0.072 3.928 14 H 0.087 0.913 15 O -0.362 6.362 16 C -0.255 4.255 17 S -0.049 6.049 18 C -0.184 4.184 19 C -0.068 4.068 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.028 4.028 23 C -0.033 4.033 24 C -0.110 4.110 25 O -0.244 6.244 26 C 0.094 3.906 27 O -0.242 6.242 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.005 0.995 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.124 0.876 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.042 -22.047 -19.602 33.580 hybrid contribution -0.857 0.336 -1.628 1.870 sum 15.185 -21.711 -21.229 33.951 Atomic orbital electron populations 1.22219 0.87132 1.01746 0.99704 1.61689 1.08122 1.14505 1.42432 1.19937 0.95006 0.86065 0.94373 1.21291 1.34614 0.97380 1.02013 0.94608 1.25898 0.97054 0.98577 0.97830 1.70057 1.48716 1.13853 1.26371 0.85723 0.79287 0.78718 0.79294 1.18852 1.20783 1.17325 1.22828 0.95996 0.99228 0.91941 1.21448 0.94730 0.92681 0.83954 0.91313 1.86701 1.74191 1.36985 1.38286 1.24117 0.94654 1.04575 1.02134 1.87977 1.16208 1.72424 1.28319 1.22272 0.94916 1.03141 0.98036 1.19044 0.94645 0.93186 0.99887 1.21146 0.90266 1.00284 0.99143 1.20362 0.98358 0.93213 1.00351 1.20144 0.83601 0.96842 1.02221 1.19938 0.94931 0.87935 1.00487 1.20094 0.92764 0.97292 1.00873 1.87339 1.28770 1.39407 1.68866 1.26116 0.80542 0.81875 1.02072 1.87331 1.27110 1.22179 1.87591 0.90142 0.93690 0.95679 0.95796 0.99510 0.92496 0.93573 0.88033 0.77105 0.87672 0.87109 0.86828 0.87294 0.82071 0.82724 0.83791 0.87586 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.37 127.69 1.20 2.65 16 2 N -0.54 -21.82 4.56 -927.09 -4.22 -26.05 16 3 C 0.17 8.37 3.62 85.55 0.31 8.68 16 4 C -0.51 -30.58 8.94 25.60 0.23 -30.36 16 5 H 0.04 2.38 7.41 -2.91 -0.02 2.36 16 6 C 0.00 0.20 5.47 84.66 0.46 0.66 16 7 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 8 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 9 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 12 C 0.03 0.85 4.66 86.30 0.40 1.25 16 13 C 0.13 3.78 3.08 30.59 0.09 3.87 16 14 H 0.07 2.48 6.78 -2.39 -0.02 2.47 16 15 O -0.56 -17.68 12.81 -148.98 -1.91 -19.58 16 16 C -0.11 -2.00 5.64 71.98 0.41 -1.59 16 17 S -0.28 -6.23 21.36 -56.49 -1.21 -7.44 16 18 C -0.04 -0.50 6.06 71.23 0.43 -0.06 16 19 C -0.07 -1.07 5.14 -19.86 -0.10 -1.17 16 20 C -0.09 -1.32 9.69 22.27 0.22 -1.10 16 21 C -0.10 -1.70 10.06 22.34 0.22 -1.48 16 22 C 0.02 0.34 7.15 22.59 0.16 0.50 16 23 C 0.01 0.23 7.15 22.59 0.16 0.40 16 24 C -0.09 -1.65 9.71 22.34 0.22 -1.43 16 25 O -0.33 -6.47 11.40 -76.14 -0.87 -7.34 16 26 C 0.20 2.57 8.89 113.37 1.01 3.58 16 27 O -0.33 -6.16 11.40 -76.06 -0.87 -7.03 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.96 6.67 -2.39 -0.02 1.94 16 30 H 0.02 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.02 1.18 5.69 -2.39 -0.01 1.17 16 32 H -0.01 -0.59 7.55 -2.39 -0.02 -0.61 16 33 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 34 H 0.05 1.22 8.00 -2.39 -0.02 1.20 16 35 H 0.10 2.17 7.94 -2.39 -0.02 2.15 16 36 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 40 H 0.11 1.11 8.08 -2.39 -0.02 1.09 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.89 384.90 -1.20 -81.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.28 Total: 15.69 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.42 Total: -15.61 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.93 Total: -86.56 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -3.64 Total: -33.95 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: -6.23 SS G_CDS: -1.21 Total: -7.44 kcal Total: -79.89 -1.20 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414125107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.858 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds