Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99893 * 2 1 4 4 C 1.53005 * 109.47232 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47085 * 64.99620 * 4 3 2 6 6 C 1.42898 * 113.99783 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47168 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47356 * 185.00250 * 7 6 5 9 9 C 1.53002 * 109.47091 * 305.00115 * 7 6 5 10 10 N 1.46498 * 109.47491 * 65.00052 * 7 6 5 11 11 C 1.34774 * 120.00348 * 155.00334 * 10 7 6 12 12 O 1.21549 * 119.99904 * 359.97438 * 11 10 7 13 13 C 1.47867 * 120.00079 * 180.02562 * 11 10 7 14 14 C 1.39669 * 120.09925 * 0.02562 * 13 11 10 15 15 C 1.38043 * 120.03800 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.24168 * 359.75416 * 15 14 13 17 17 C 1.39179 * 120.20357 * 0.50266 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.76778 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.49916 * 17 16 15 28 28 H 1.09002 * 109.47349 * 60.00452 * 1 2 3 29 29 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47275 * 299.99968 * 1 2 3 31 31 H 1.09001 * 109.47366 * 60.00080 * 3 2 1 32 32 H 1.09002 * 109.47023 * 299.99818 * 3 2 1 33 33 H 1.09003 * 109.46984 * 304.99740 * 4 3 2 34 34 H 1.08996 * 109.47023 * 185.00430 * 4 3 2 35 35 H 1.09002 * 109.47024 * 60.00076 * 6 5 4 36 36 H 1.09007 * 109.47391 * 300.00458 * 6 5 4 37 37 H 1.08997 * 109.46910 * 59.99862 * 9 7 6 38 38 H 1.08995 * 109.47414 * 179.97438 * 9 7 6 39 39 H 1.09005 * 109.46881 * 300.00176 * 9 7 6 40 40 H 0.97008 * 119.99747 * 335.00134 * 10 7 6 41 41 H 1.08002 * 119.98588 * 359.96545 * 14 13 11 42 42 H 1.08000 * 119.87868 * 180.02562 * 15 14 13 43 43 H 1.08005 * 119.89464 * 180.25271 * 16 15 14 44 44 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.12339 * 180.23002 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4203 -1.3250 7 6 5.7247 -0.2330 -2.6652 8 1 6.7948 -0.4357 -2.7069 9 6 4.9511 -1.5455 -2.8059 10 7 5.3559 0.6707 -3.7577 11 6 5.9815 0.5795 -4.9480 12 8 6.8521 -0.2521 -5.1148 13 6 5.6096 1.4920 -6.0505 14 6 4.6107 2.4495 -5.8605 15 6 4.2649 3.3010 -6.8905 16 6 4.9074 3.2142 -8.1107 17 6 5.9006 2.2603 -8.3127 18 16 6.7126 2.1498 -9.8725 19 6 5.7402 0.8941 -10.6354 20 1 4.8643 0.5098 -10.1338 21 6 6.0995 0.3989 -11.8806 22 7 7.1665 0.8676 -12.4922 23 14 5.0681 -0.9320 -12.6896 24 1 3.9295 -1.2831 -11.8034 25 1 4.5485 -0.4343 -13.9887 26 1 5.9062 -2.1360 -12.9202 27 6 6.2552 1.3994 -7.2823 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1765 0.0890 35 1 5.7358 -0.2118 -0.5108 36 1 5.8622 1.3965 -1.2631 37 1 3.8810 -1.3428 -2.7642 38 1 5.1955 -2.0107 -3.7608 39 1 5.2256 -2.2179 -1.9930 40 1 4.6613 1.3346 -3.6245 41 1 4.1083 2.5236 -4.9073 42 1 3.4924 4.0407 -6.7407 43 1 4.6352 3.8860 -8.9114 44 1 7.4180 0.5212 -13.3627 45 1 7.0280 0.6607 -7.4350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430626163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = -133.369572 kcal Electronic energy + Delta-G solvation = -26138.473244 eV Core-core repulsion = 22246.240239 eV Total energy + Delta-G solvation = -3892.233004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32409 -39.64518 -39.11068 -38.27300 -36.26379 -34.66086 -33.19596 -31.95625 -31.43507 -30.62606 -27.75206 -27.50319 -26.98407 -25.14602 -23.71609 -23.45043 -22.23129 -21.50219 -20.03063 -19.02008 -18.12795 -17.65117 -17.32432 -17.10362 -16.94338 -16.65023 -16.33640 -16.26891 -15.98251 -15.91018 -15.58033 -15.21134 -14.80234 -14.65817 -14.58445 -14.31570 -13.85439 -13.39409 -13.27378 -13.22132 -13.05696 -12.98935 -12.98394 -12.71586 -12.63265 -12.39529 -12.25763 -11.99322 -11.87184 -11.73444 -11.26365 -11.10983 -10.75735 -10.60886 -10.52929 -10.27309 -9.90121 -9.69868 -8.80699 -8.40059 -6.19751 -0.17826 0.25605 1.29005 1.35585 1.45760 1.65162 1.79658 2.07349 2.23773 2.66387 2.81279 2.92099 2.92854 3.41250 3.63957 3.80632 3.94730 4.02273 4.05791 4.17841 4.26624 4.34447 4.37302 4.47040 4.47814 4.51538 4.54872 4.59682 4.62704 4.66324 4.67460 4.79658 4.85101 4.89740 4.92070 4.97513 5.22993 5.30123 5.32674 5.38247 5.45046 5.50573 5.86466 6.15365 6.18230 6.32621 6.49025 7.00432 7.15216 8.67223 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.002209 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.523741 B =12672.518660 C =12786.920922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.056 3.944 4 C 0.059 3.941 5 O -0.395 6.395 6 C 0.062 3.938 7 C 0.143 3.857 8 H 0.090 0.910 9 C -0.153 4.153 10 N -0.700 5.700 11 C 0.562 3.438 12 O -0.581 6.581 13 C -0.157 4.157 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.062 4.062 17 C -0.130 4.130 18 S -0.094 6.094 19 C -0.535 4.535 20 H 0.066 0.934 21 C 0.019 3.981 22 N -0.905 5.905 23 Si 0.992 3.008 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.272 1.272 27 C -0.045 4.045 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.415 0.585 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.136 0.864 44 H 0.274 0.726 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 4.542 30.084 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.020 4.020 4 C -0.017 4.017 5 O -0.315 6.315 6 C -0.015 4.015 7 C 0.039 3.961 8 H 0.108 0.892 9 C -0.211 4.211 10 N -0.353 5.353 11 C 0.350 3.650 12 O -0.462 6.462 13 C -0.162 4.162 14 C -0.082 4.082 15 C -0.140 4.140 16 C -0.083 4.083 17 C -0.241 4.241 18 S 0.141 5.859 19 C -0.682 4.682 20 H 0.084 0.916 21 C -0.186 4.186 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.191 1.191 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.187 0.813 42 H 0.193 0.807 43 H 0.154 0.846 44 H 0.083 0.917 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.642 4.301 29.244 31.769 hybrid contribution -1.281 -1.110 -0.351 1.731 sum -12.923 3.191 28.893 31.812 Atomic orbital electron populations 1.22864 0.79939 1.03401 1.00760 1.87917 1.21019 1.28892 1.95594 1.22753 0.92371 0.84885 1.01980 1.22712 0.93464 0.98681 0.86847 1.87930 1.21764 1.82612 1.39183 1.22754 0.82226 1.01013 0.95461 1.21149 1.00007 0.89875 0.85085 0.89157 1.22001 1.01210 0.96564 1.01350 1.45774 1.40456 1.38206 1.10894 1.18398 0.80814 0.82619 0.83122 1.90747 1.33877 1.38766 1.82814 1.19981 1.01756 1.00644 0.93823 1.21687 0.93769 0.92182 1.00528 1.21545 1.00595 1.00366 0.91456 1.22073 0.92074 0.95546 0.98646 1.22505 1.02213 1.00152 0.99208 1.83454 1.44869 1.51657 1.05924 1.23084 1.13500 1.25208 1.06413 0.91603 1.26011 0.96706 0.99192 0.96725 1.70111 1.25438 1.42882 1.15754 0.84997 0.78042 0.77375 0.78166 1.19133 1.18911 1.19740 1.21626 0.97068 0.96086 0.91917 0.93666 0.89443 0.92684 0.89723 0.92278 0.92208 0.89296 0.89946 0.90803 0.91646 0.95024 0.90170 0.74619 0.81313 0.80677 0.84614 0.91684 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.64 10.67 -144.34 -1.54 -8.18 16 3 C 0.06 0.56 6.32 71.98 0.45 1.02 16 4 C 0.06 0.55 6.32 71.98 0.45 1.00 16 5 O -0.40 -5.68 9.16 -144.34 -1.32 -7.00 16 6 C 0.06 0.78 5.68 71.98 0.41 1.19 16 7 C 0.14 2.84 2.98 44.99 0.13 2.98 16 8 H 0.09 2.03 7.58 -2.39 -0.02 2.01 16 9 C -0.15 -3.34 9.29 71.98 0.67 -2.67 16 10 N -0.70 -15.78 5.01 -445.40 -2.23 -18.01 16 11 C 0.56 18.48 7.74 86.79 0.67 19.15 16 12 O -0.58 -24.29 16.00 -3.87 -0.06 -24.35 16 13 C -0.16 -5.32 5.87 -20.11 -0.12 -5.44 16 14 C -0.06 -1.53 9.54 22.57 0.22 -1.31 16 15 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 16 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 17 C -0.13 -5.85 5.45 22.65 0.12 -5.73 16 18 S -0.09 -5.21 21.40 -56.49 -1.21 -6.42 16 19 C -0.53 -31.98 9.46 67.94 0.64 -31.33 16 20 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 21 C 0.02 1.10 5.49 84.84 0.47 1.57 16 22 N -0.91 -55.29 13.22 21.64 0.29 -55.00 16 23 Si 0.99 45.49 29.55 68.60 2.03 47.52 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C -0.05 -1.97 9.34 22.70 0.21 -1.76 16 28 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.06 1.47 7.56 -2.39 -0.02 1.45 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.42 6.95 6.41 -92.70 -0.59 6.35 16 41 H 0.17 2.38 6.40 -2.91 -0.02 2.36 16 42 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 43 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.10 5.10 7.65 -2.91 -0.02 5.08 16 Total: -1.00 -81.57 398.01 2.37 -79.20 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.40 Total: 16.82 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 6.03 Total: -24.59 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.95 Total: -73.01 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -2.92 Total: -39.53 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -81.57 2.37 -79.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430626163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.172 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds