Wall clock time and date at job start Tue Mar 31 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47378 * 2 1 4 4 C 1.35900 * 117.00211 * 180.02562 * 3 2 1 5 5 C 1.38756 * 120.14527 * 0.02562 * 4 3 2 6 6 C 1.37857 * 119.65594 * 180.20892 * 5 4 3 7 7 C 1.38883 * 120.59052 * 0.02897 * 6 5 4 8 8 C 1.37723 * 119.92845 * 359.52903 * 7 6 5 9 9 C 1.38401 * 120.14608 * 179.97438 * 4 3 2 10 10 C 1.50609 * 122.85347 * 180.74284 * 8 7 6 11 11 C 1.52781 * 110.86315 * 339.83714 * 10 8 7 12 12 N 1.47232 * 107.89583 * 47.50306 * 11 10 8 13 13 S 1.65606 * 121.33512 * 115.74511 * 12 11 10 14 14 O 1.42094 * 104.27817 * 333.92948 * 13 12 11 15 15 O 1.42106 * 104.27580 * 206.07179 * 13 12 11 16 16 C 1.81396 * 104.45103 * 90.00164 * 13 12 11 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.46677 * 117.32923 * 296.01622 * 12 11 10 27 27 H 1.08994 * 109.47449 * 60.00221 * 1 2 3 28 28 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.00007 * 1 2 3 30 30 H 1.09007 * 109.47139 * 239.99500 * 2 1 3 31 31 H 1.09003 * 109.47376 * 120.00098 * 2 1 3 32 32 H 1.07999 * 120.17640 * 0.18559 * 5 4 3 33 33 H 1.08002 * 119.70994 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.72599 * 359.94927 * 9 4 3 35 35 H 1.08997 * 109.20321 * 219.47763 * 10 8 7 36 36 H 1.09002 * 109.19733 * 100.19392 * 10 8 7 37 37 H 1.09002 * 109.77489 * 287.90512 * 11 10 8 38 38 H 1.09001 * 109.77905 * 167.10169 * 11 10 8 39 39 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 40 40 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 41 41 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 42 42 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 43 43 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.43646 * 164.20879 * 26 12 11 45 45 H 1.08998 * 109.43048 * 284.07979 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2017 0.4271 -0.0016 6 6 5.5668 0.6193 0.0022 7 6 6.0999 1.9018 0.0077 8 6 5.2615 2.9944 -0.0004 9 6 3.8859 2.8029 -0.0011 10 6 5.7680 4.4127 -0.0115 11 6 7.2133 4.4783 0.4795 12 7 7.9769 3.4320 -0.2205 13 16 9.2099 3.8141 -1.2579 14 8 8.8874 5.1184 -1.7203 15 8 9.2680 2.7127 -2.1539 16 6 10.6880 3.8586 -0.2073 17 6 11.9099 4.2050 -1.0605 18 6 13.1377 4.2426 -0.1875 19 1 13.0550 4.0393 0.8699 20 6 14.3670 4.5355 -0.7391 21 7 15.4385 4.5678 0.0227 22 14 14.5102 4.8865 -2.5682 23 1 14.3334 6.3412 -2.8084 24 1 15.8501 4.4646 -3.0497 25 1 13.4611 4.1327 -3.3006 26 6 7.5977 2.0380 0.0331 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7945 -0.5732 -0.0050 33 1 6.2276 -0.2349 0.0010 34 1 3.2261 3.6579 -0.0020 35 1 5.1406 5.0226 0.6384 36 1 5.7166 4.8037 -1.0277 37 1 7.2458 4.3017 1.5546 38 1 7.6358 5.4572 0.2529 39 1 10.8338 2.8829 0.2562 40 1 10.5599 4.6137 0.5682 41 1 11.7643 5.1806 -1.5244 42 1 12.0377 3.4495 -1.8357 43 1 16.3033 4.7742 -0.3653 44 1 8.0325 1.3984 -0.7349 45 1 7.9696 1.7333 1.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433481978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:57 Heat of formation + Delta-G solvation = -91.576289 kcal Electronic energy + Delta-G solvation = -26998.388166 eV Core-core repulsion = 23107.967454 eV Total energy + Delta-G solvation = -3890.420712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63289 -38.89665 -36.81929 -36.11784 -35.55189 -33.95436 -33.07646 -32.21725 -31.48900 -30.36867 -29.34358 -25.99714 -24.98620 -24.57139 -23.15806 -22.31345 -21.25343 -20.38132 -18.60692 -18.08448 -17.49957 -16.97913 -16.56508 -16.45271 -16.13215 -15.58975 -15.25857 -14.81056 -14.62309 -14.55957 -14.27684 -13.80258 -13.63303 -13.60162 -13.43028 -13.10022 -12.83651 -12.76525 -12.60207 -12.41116 -12.12772 -11.91188 -11.82975 -11.77535 -11.71636 -11.45266 -11.26181 -11.20487 -11.08384 -10.88980 -10.75855 -10.45447 -10.16804 -9.76445 -9.44842 -9.02611 -8.89385 -8.67160 -8.23304 -6.17439 -4.18753 0.58923 1.10703 1.20873 2.84371 2.88240 3.25960 3.33419 3.37573 3.48838 4.17865 4.35078 4.36349 4.44554 4.49487 4.49767 4.63531 4.68865 4.79143 4.83263 4.95219 4.97811 5.08156 5.14169 5.17695 5.29728 5.34794 5.35958 5.41493 5.52069 5.53566 5.55372 5.60614 5.64414 5.77426 5.85225 5.96383 6.07832 6.14989 6.27090 6.41904 6.55414 6.60016 6.80568 6.92872 7.16236 7.53772 8.35628 8.83689 9.42201 10.94891 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.002272 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.981703 B =12318.937591 C =12486.710492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.127 3.873 5 C -0.209 4.209 6 C -0.073 4.073 7 C -0.121 4.121 8 C -0.025 4.025 9 C -0.155 4.155 10 C -0.098 4.098 11 C 0.122 3.878 12 N -1.007 6.007 13 S 2.590 3.410 14 O -0.961 6.961 15 O -0.962 6.962 16 C -0.581 4.581 17 C -0.007 4.007 18 C -0.519 4.519 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.161 3.839 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.032 0.968 43 H 0.266 0.734 44 H 0.105 0.895 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.665 -8.070 3.046 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.082 3.918 5 C -0.227 4.227 6 C -0.092 4.092 7 C -0.123 4.123 8 C -0.026 4.026 9 C -0.174 4.174 10 C -0.136 4.136 11 C -0.003 4.003 12 N -0.842 5.842 13 S 2.689 3.311 14 O -0.951 6.951 15 O -0.952 6.952 16 C -0.714 4.714 17 C -0.047 4.047 18 C -0.558 4.558 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.695 3.305 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.186 1.186 26 C 0.036 3.964 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.745 -7.746 2.101 28.883 hybrid contribution 0.490 -0.236 -0.225 0.588 sum -27.256 -7.981 1.876 28.462 Atomic orbital electron populations 1.21774 0.92768 1.02848 1.03536 1.22768 0.95828 0.82056 1.01409 1.86056 1.19149 1.29223 1.88818 1.18838 0.82129 0.94136 0.96733 1.21123 0.94178 0.97974 1.09458 1.20860 0.94482 0.96513 0.97354 1.19633 0.95559 0.92751 1.04343 1.19274 0.91634 0.95153 0.96528 1.20392 0.94466 0.94934 1.07625 1.20844 0.96744 0.92669 1.03373 1.21372 0.90729 0.91383 0.96811 1.57970 1.49856 1.12050 1.64369 1.05712 0.75838 0.74087 0.75464 1.93538 1.82745 1.40130 1.78730 1.93535 1.86590 1.54112 1.61005 1.30341 1.15831 1.10846 1.14411 1.19418 0.92453 0.97195 0.95611 1.20846 0.89557 1.49174 0.96271 0.90400 1.24987 0.95658 0.94406 0.98062 1.69881 0.99125 1.48524 1.35772 0.86928 0.78126 0.79575 0.85843 1.19653 1.20742 1.18624 1.20099 0.91299 0.82453 1.02559 0.91508 0.90378 0.91528 0.92045 0.92057 0.85499 0.85342 0.85306 0.89390 0.89506 0.90624 0.88238 0.85604 0.85607 0.95391 0.94953 0.92374 0.87725 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.32 -3.20 10.14 -19.43 -0.20 -3.39 16 4 C 0.13 1.36 6.68 -39.33 -0.26 1.10 16 5 C -0.21 -2.02 9.04 -39.53 -0.36 -2.38 16 6 C -0.07 -0.74 9.61 -39.48 -0.38 -1.12 16 7 C -0.12 -1.40 5.81 -104.71 -0.61 -2.00 16 8 C -0.03 -0.29 5.76 -104.61 -0.60 -0.89 16 9 C -0.16 -1.70 9.53 -39.28 -0.37 -2.07 16 10 C -0.10 -1.00 5.86 -28.04 -0.16 -1.17 16 11 C 0.12 1.32 6.35 -3.75 -0.02 1.30 16 12 N -1.01 -13.16 3.19 -115.25 -0.37 -13.52 16 13 S 2.59 43.80 5.47 -107.50 -0.59 43.21 16 14 O -0.96 -18.38 16.77 -57.54 -0.96 -19.35 16 15 O -0.96 -18.72 16.62 -57.54 -0.96 -19.67 16 16 C -0.58 -10.44 6.12 37.16 0.23 -10.22 16 17 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 18 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 22 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 26 C 0.16 1.87 6.25 -5.23 -0.03 1.84 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 32 H 0.13 0.94 6.33 -52.49 -0.33 0.61 16 33 H 0.13 1.02 8.05 -52.49 -0.42 0.60 16 34 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16 35 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.06 7.12 -51.93 -0.37 0.69 16 39 H 0.13 2.05 8.14 -51.92 -0.42 1.63 16 40 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 42 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.10 1.26 6.86 -51.93 -0.36 0.91 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -35.25 376.37 -10.69 -45.94 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.86 Total: -0.98 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -2.54 Total: -28.50 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.41 Total: -39.68 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.12 Total: -42.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 43.80 SS G_CDS: -0.59 Total: 43.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.25 -10.69 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433481978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.632 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds