Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47378 * 2 1 4 4 C 1.35900 * 117.00211 * 180.02562 * 3 2 1 5 5 C 1.38756 * 120.14527 * 0.02562 * 4 3 2 6 6 C 1.37857 * 119.65594 * 180.20892 * 5 4 3 7 7 C 1.38883 * 120.59052 * 0.02897 * 6 5 4 8 8 C 1.37723 * 119.92845 * 359.52903 * 7 6 5 9 9 C 1.38401 * 120.14608 * 179.97438 * 4 3 2 10 10 C 1.50609 * 122.85347 * 180.74284 * 8 7 6 11 11 C 1.52781 * 110.86315 * 339.83714 * 10 8 7 12 12 N 1.47232 * 107.89583 * 47.50306 * 11 10 8 13 13 S 1.65606 * 121.33512 * 115.74511 * 12 11 10 14 14 O 1.42094 * 104.27817 * 333.92948 * 13 12 11 15 15 O 1.42106 * 104.27580 * 206.07179 * 13 12 11 16 16 C 1.81396 * 104.45103 * 90.00164 * 13 12 11 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 C 1.46677 * 117.32923 * 296.01622 * 12 11 10 27 27 H 1.08994 * 109.47449 * 60.00221 * 1 2 3 28 28 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.00007 * 1 2 3 30 30 H 1.09007 * 109.47139 * 239.99500 * 2 1 3 31 31 H 1.09003 * 109.47376 * 120.00098 * 2 1 3 32 32 H 1.07999 * 120.17640 * 0.18559 * 5 4 3 33 33 H 1.08002 * 119.70994 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.72599 * 359.94927 * 9 4 3 35 35 H 1.08997 * 109.20321 * 219.47763 * 10 8 7 36 36 H 1.09002 * 109.19733 * 100.19392 * 10 8 7 37 37 H 1.09002 * 109.77489 * 287.90512 * 11 10 8 38 38 H 1.09001 * 109.77905 * 167.10169 * 11 10 8 39 39 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 40 40 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 41 41 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 42 42 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 43 43 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.43646 * 164.20879 * 26 12 11 45 45 H 1.08998 * 109.43048 * 284.07979 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2017 0.4271 -0.0016 6 6 5.5668 0.6193 0.0022 7 6 6.0999 1.9018 0.0077 8 6 5.2615 2.9944 -0.0004 9 6 3.8859 2.8029 -0.0011 10 6 5.7680 4.4127 -0.0115 11 6 7.2133 4.4783 0.4795 12 7 7.9769 3.4320 -0.2205 13 16 9.2099 3.8141 -1.2579 14 8 8.8874 5.1184 -1.7203 15 8 9.2680 2.7127 -2.1539 16 6 10.6880 3.8586 -0.2073 17 6 11.9099 4.2050 -1.0605 18 6 13.1377 4.2426 -0.1875 19 1 13.0550 4.0393 0.8699 20 6 14.3670 4.5355 -0.7391 21 7 15.4385 4.5678 0.0227 22 14 14.5102 4.8865 -2.5682 23 1 14.3334 6.3412 -2.8084 24 1 15.8501 4.4646 -3.0497 25 1 13.4611 4.1327 -3.3006 26 6 7.5977 2.0380 0.0331 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7945 -0.5732 -0.0050 33 1 6.2276 -0.2349 0.0010 34 1 3.2261 3.6579 -0.0020 35 1 5.1406 5.0226 0.6384 36 1 5.7166 4.8037 -1.0277 37 1 7.2458 4.3017 1.5546 38 1 7.6358 5.4572 0.2529 39 1 10.8338 2.8829 0.2562 40 1 10.5599 4.6137 0.5682 41 1 11.7643 5.1806 -1.5244 42 1 12.0377 3.4495 -1.8357 43 1 16.3033 4.7742 -0.3653 44 1 8.0325 1.3984 -0.7349 45 1 7.9696 1.7333 1.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433481978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = -114.963463 kcal Electronic energy + Delta-G solvation = -26999.402310 eV Core-core repulsion = 23107.967454 eV Total energy + Delta-G solvation = -3891.434856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37616 -39.65338 -38.25280 -37.11565 -36.85071 -35.88247 -33.86872 -33.46208 -32.77846 -31.15227 -30.12418 -27.87198 -25.88259 -25.25050 -23.89070 -23.06601 -23.02890 -21.28306 -19.79109 -19.31258 -18.79732 -18.33274 -17.58465 -17.23649 -17.03251 -16.71227 -16.45001 -16.39105 -15.70792 -15.51996 -15.36122 -15.13989 -14.81506 -14.52222 -14.28854 -14.15665 -13.80063 -13.67595 -13.56365 -13.40068 -13.26490 -13.22457 -13.06676 -13.01471 -12.94452 -12.93505 -12.43133 -12.28109 -12.22476 -11.99227 -11.89253 -11.70682 -11.59188 -11.45840 -11.26608 -10.83896 -10.05883 -9.71438 -9.00569 -8.36030 -6.41577 -0.76672 0.34402 0.42077 1.32232 1.34270 1.44169 1.66926 2.25360 2.29860 2.71214 2.82112 2.97931 3.13701 3.58843 3.75711 3.86194 3.93394 4.02100 4.06190 4.08133 4.15239 4.17942 4.23521 4.34002 4.38971 4.49329 4.57713 4.61011 4.62193 4.70908 4.80816 4.89519 4.94299 5.00602 5.05718 5.07359 5.12977 5.14900 5.21673 5.30632 5.39920 5.47889 5.54180 5.72078 5.82844 6.17449 6.47545 6.64545 7.22758 8.79395 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.002272 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.981703 B =12318.937591 C =12486.710492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.117 3.883 5 C -0.210 4.210 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.038 4.038 9 C -0.168 4.168 10 C -0.097 4.097 11 C 0.114 3.886 12 N -1.000 6.000 13 S 2.618 3.382 14 O -0.984 6.984 15 O -0.988 6.988 16 C -0.585 4.585 17 C -0.018 4.018 18 C -0.526 4.526 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.939 5.939 22 Si 0.924 3.076 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.250 1.250 26 C 0.156 3.844 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.270 0.730 44 H 0.098 0.902 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.602 -8.871 2.901 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.072 3.928 5 C -0.228 4.228 6 C -0.096 4.096 7 C -0.140 4.140 8 C -0.038 4.038 9 C -0.187 4.187 10 C -0.136 4.136 11 C -0.011 4.011 12 N -0.838 5.838 13 S 2.716 3.284 14 O -0.974 6.974 15 O -0.979 6.979 16 C -0.716 4.716 17 C -0.057 4.057 18 C -0.565 4.565 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.579 5.579 22 Si 0.747 3.253 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.174 1.174 26 C 0.031 3.969 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.683 -8.547 1.958 30.951 hybrid contribution 0.954 -0.054 -0.072 0.958 sum -28.729 -8.601 1.885 30.048 Atomic orbital electron populations 1.21805 0.91606 1.04142 1.03118 1.23050 0.96813 0.80805 1.02255 1.86047 1.18806 1.31291 1.88711 1.19043 0.82713 0.94476 0.96616 1.21387 0.93984 0.98812 1.08634 1.21129 0.95054 0.96713 0.96680 1.19749 0.95348 0.93507 1.05430 1.19432 0.91911 0.95592 0.96889 1.20547 0.94567 0.95560 1.08002 1.20875 0.96765 0.92680 1.03258 1.21678 0.90606 0.90696 0.98075 1.57630 1.48552 1.13503 1.64107 1.04623 0.75668 0.72986 0.75121 1.93504 1.83076 1.41409 1.79440 1.93497 1.87088 1.54931 1.62338 1.30325 1.14602 1.12226 1.14491 1.19382 0.93089 0.97417 0.95810 1.21174 0.91439 1.48141 0.95777 0.93135 1.25864 0.95458 0.94491 1.02682 1.70007 0.99815 1.50198 1.37863 0.86042 0.78710 0.80092 0.80503 1.18525 1.19930 1.17372 1.20311 0.91703 0.81180 1.03695 0.92045 0.88218 0.91817 0.91344 0.90968 0.83320 0.83363 0.84665 0.86846 0.90766 0.88010 0.88233 0.84115 0.84029 0.95108 0.95043 0.92139 0.88432 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.52 5.46 71.98 0.39 0.91 16 3 O -0.33 -6.29 10.14 -92.42 -0.94 -7.23 16 4 C 0.12 2.35 6.68 22.43 0.15 2.50 16 5 C -0.21 -3.64 9.04 22.30 0.20 -3.44 16 6 C -0.08 -1.40 9.61 22.33 0.21 -1.19 16 7 C -0.14 -2.95 5.81 -19.92 -0.12 -3.06 16 8 C -0.04 -0.81 5.76 -19.86 -0.11 -0.92 16 9 C -0.17 -3.48 9.53 22.47 0.21 -3.27 16 10 C -0.10 -1.84 5.86 29.75 0.17 -1.66 16 11 C 0.11 2.23 6.35 86.17 0.55 2.78 16 12 N -1.00 -24.40 3.19 -518.55 -1.66 -26.06 16 13 S 2.62 85.50 5.47 -56.49 -0.31 85.19 16 14 O -0.98 -36.69 16.77 -127.65 -2.14 -38.83 16 15 O -0.99 -37.56 16.62 -127.65 -2.12 -39.69 16 16 C -0.58 -20.40 6.12 71.98 0.44 -19.96 16 17 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 18 C -0.53 -29.51 9.66 25.60 0.25 -29.26 16 19 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 20 C 0.01 0.79 5.47 84.66 0.46 1.25 16 21 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 22 Si 0.92 43.73 27.47 68.60 1.88 45.62 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 26 C 0.16 3.31 6.25 85.51 0.53 3.85 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 31 H 0.07 0.66 7.67 -2.39 -0.02 0.65 16 32 H 0.15 1.81 6.33 -2.91 -0.02 1.79 16 33 H 0.15 1.98 8.05 -2.91 -0.02 1.96 16 34 H 0.14 2.47 8.05 -2.91 -0.02 2.45 16 35 H 0.11 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.96 7.12 -2.39 -0.02 1.94 16 39 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 40 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 41 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 42 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.10 2.22 6.86 -2.39 -0.02 2.20 16 45 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.08 376.37 0.15 -75.93 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.93 Total: 14.90 kcal Atomic # 6 Polarization: -56.88 SS G_CDS: 4.21 Total: -52.66 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.36 Total: -83.23 kcal Atomic # 8 Polarization: -80.54 SS G_CDS: -5.20 Total: -85.74 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 16 Polarization: 85.50 SS G_CDS: -0.31 Total: 85.19 kcal Total: -76.08 0.15 -75.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433481978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.034 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds