Wall clock time and date at job start Tue Mar 31 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46960 * 2 1 4 4 C 1.35903 * 116.99621 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.05844 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94721 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05316 * 359.72066 * 6 5 4 8 8 C 1.38247 * 120.10890 * 0.55425 * 7 6 5 9 9 C 1.38167 * 120.05763 * 359.44909 * 8 7 6 10 10 C 1.50700 * 120.02972 * 180.25234 * 9 8 7 11 11 N 1.46498 * 109.46919 * 260.00239 * 10 9 8 12 12 S 1.65599 * 119.99866 * 165.00077 * 11 10 9 13 13 O 1.42094 * 104.27722 * 181.06389 * 12 11 10 14 14 O 1.42099 * 104.27779 * 308.92629 * 12 11 10 15 15 C 1.81401 * 104.45089 * 64.99417 * 12 11 10 16 16 C 1.53001 * 109.47465 * 173.87518 * 15 12 11 17 17 C 1.50697 * 115.54983 * 65.27268 * 16 15 12 18 18 H 1.08002 * 120.00121 * 268.55042 * 17 16 15 19 19 C 1.37880 * 120.00158 * 88.54509 * 17 16 15 20 20 N 1.31514 * 120.00245 * 174.69710 * 19 17 16 21 21 Si 1.86800 * 119.99551 * 354.70577 * 19 17 16 22 22 H 1.48506 * 109.47199 * 92.55161 * 21 19 17 23 23 H 1.48505 * 109.47073 * 212.54517 * 21 19 17 24 24 H 1.48491 * 109.47669 * 332.54932 * 21 19 17 25 25 C 1.53002 * 117.49887 * 279.60580 * 16 15 12 26 26 C 1.53002 * 117.50221 * 210.94493 * 16 15 12 27 27 H 1.08993 * 109.47050 * 59.99873 * 1 2 3 28 28 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47058 * 299.99478 * 1 2 3 30 30 H 1.09000 * 109.46928 * 239.99985 * 2 1 3 31 31 H 1.08999 * 109.46821 * 120.00482 * 2 1 3 32 32 H 1.08004 * 120.03019 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.97609 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.94487 * 180.30165 * 7 6 5 35 35 H 1.08002 * 119.96866 * 179.72278 * 8 7 6 36 36 H 1.09002 * 109.46928 * 20.00034 * 10 9 8 37 37 H 1.08995 * 109.47261 * 139.99857 * 10 9 8 38 38 H 0.96996 * 120.00158 * 344.99313 * 11 10 9 39 39 H 1.09002 * 109.47562 * 293.88049 * 15 12 11 40 40 H 1.09001 * 109.47068 * 53.87370 * 15 12 11 41 41 H 0.96997 * 119.99565 * 180.02562 * 20 19 17 42 42 H 1.08997 * 117.49852 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.50010 * 145.01828 * 25 16 15 44 44 H 1.08995 * 117.50099 * 214.97817 * 26 16 15 45 45 H 1.09000 * 117.49584 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6094 0.0027 7 6 6.0963 1.8878 -0.0031 8 6 5.2552 2.9849 0.0015 9 6 3.8850 2.8066 0.0005 10 6 2.9688 4.0031 -0.0001 11 7 2.4805 4.2449 1.3598 12 16 1.7646 5.6895 1.7378 13 8 1.4497 5.5738 3.1185 14 8 2.6852 6.6684 1.2757 15 6 0.2501 5.7190 0.7398 16 6 -0.5844 6.9452 1.1152 17 6 0.0378 8.2789 0.7910 18 1 0.6456 8.7844 1.5269 19 6 -0.1686 8.8537 -0.4451 20 7 0.2862 10.0627 -0.6923 21 14 -1.0945 7.9153 -1.7686 22 1 -2.5372 8.2610 -1.7031 23 1 -0.5576 8.2829 -3.1035 24 1 -0.9248 6.4562 -1.5514 25 6 -1.4443 6.8550 2.3775 26 6 -2.1053 6.8279 0.9971 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7886 -0.5729 0.0024 33 1 6.2281 -0.2462 0.0039 34 1 7.1669 2.0293 -0.0072 35 1 5.6695 3.9823 0.0015 36 1 3.5149 4.8787 -0.3512 37 1 2.1234 3.8129 -0.6613 38 1 2.5765 3.5588 2.0387 39 1 0.5122 5.7676 -0.3171 40 1 -0.3277 4.8144 0.9295 41 1 0.1406 10.4672 -1.5618 42 1 -1.4158 5.9220 2.9403 43 1 -1.5602 7.7605 2.9733 44 1 -2.6559 7.7154 0.6853 45 1 -2.5114 5.8773 0.6516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451100056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:52 Heat of formation + Delta-G solvation = -60.036621 kcal Electronic energy + Delta-G solvation = -27988.140538 eV Core-core repulsion = 24099.087489 eV Total energy + Delta-G solvation = -3889.053049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50021 -37.81872 -37.09200 -36.29944 -35.30871 -35.00365 -32.16187 -32.13229 -31.07116 -29.69150 -28.45472 -25.63945 -25.47464 -24.31091 -21.92964 -21.68565 -21.47293 -19.59628 -18.61474 -18.40952 -17.10289 -16.70675 -16.40436 -16.23617 -16.05359 -15.41404 -15.20992 -14.99206 -14.65043 -14.16255 -13.94182 -13.86026 -13.57824 -13.26437 -12.97968 -12.88891 -12.81781 -12.58206 -12.29400 -12.24083 -12.00972 -11.75743 -11.45025 -11.35627 -11.17419 -11.13598 -11.02707 -10.89780 -10.83120 -10.62014 -10.33938 -10.07115 -9.71588 -9.21263 -9.13382 -9.11951 -8.63517 -8.42145 -8.37474 -6.14216 -4.21351 0.88458 1.17848 1.24864 2.94431 3.24510 3.34317 3.34841 3.38189 3.69097 4.37623 4.42158 4.49829 4.55558 4.61353 4.72265 4.82981 4.86173 4.90414 4.95186 5.02050 5.11407 5.13958 5.26431 5.36048 5.46760 5.50412 5.55366 5.62395 5.77345 5.78897 5.84144 5.95393 6.04210 6.07432 6.17114 6.24185 6.24943 6.35328 6.45796 6.58289 6.68919 6.91591 7.09258 7.18665 7.28766 7.62865 8.39975 8.91414 9.47178 10.97329 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.003795 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.290000 B = 7375.581451 C = 7893.904913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.144 3.856 5 C -0.214 4.214 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.062 4.062 9 C -0.125 4.125 10 C 0.165 3.835 11 N -1.125 6.125 12 S 2.615 3.385 13 O -0.969 6.969 14 O -0.941 6.941 15 C -0.576 4.576 16 C 0.002 3.998 17 C -0.509 4.509 18 H 0.087 0.913 19 C 0.089 3.911 20 N -0.883 5.883 21 Si 0.873 3.127 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.256 1.256 25 C -0.177 4.177 26 C -0.185 4.185 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.267 0.733 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -23.415 -1.054 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.221 6.221 4 C 0.097 3.903 5 C -0.233 4.233 6 C -0.096 4.096 7 C -0.178 4.178 8 C -0.081 4.081 9 C -0.127 4.127 10 C 0.039 3.961 11 N -0.881 5.881 12 S 2.711 3.289 13 O -0.960 6.960 14 O -0.931 6.931 15 C -0.708 4.708 16 C -0.001 4.001 17 C -0.545 4.545 18 H 0.105 0.895 19 C -0.116 4.116 20 N -0.518 5.518 21 Si 0.700 3.300 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.180 1.180 25 C -0.214 4.214 26 C -0.224 4.224 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.243 0.757 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.737 -22.317 -0.744 23.055 hybrid contribution -0.823 -1.435 -1.117 1.996 sum 4.913 -23.753 -1.861 24.327 Atomic orbital electron populations 1.21790 0.92582 1.02806 1.03970 1.22799 0.96081 0.82003 1.01210 1.86149 1.18663 1.29092 1.88163 1.18850 0.82526 0.93452 0.95438 1.21208 0.94434 0.97852 1.09775 1.20959 0.94268 0.97367 0.97046 1.21074 1.00002 0.92339 1.04403 1.21087 0.91585 0.99791 0.95644 1.19259 0.94227 0.91925 1.07330 1.19976 0.96575 0.95812 0.83739 1.55971 1.76951 1.37189 1.18037 1.04901 0.76698 0.72304 0.75018 1.93511 1.85968 1.85528 1.30990 1.93573 1.59755 1.57329 1.82394 1.30290 1.19570 1.05759 1.15147 1.18858 0.89169 0.92696 0.99371 1.20347 1.32762 1.00121 1.01306 0.89532 1.24939 0.94448 0.94240 0.97930 1.69897 1.44990 1.13826 1.23123 0.86940 0.80312 0.81725 0.81007 1.20164 1.21701 1.18020 1.23019 1.05883 1.02041 0.90479 1.22980 0.96998 1.01187 1.01244 0.91347 0.90446 0.91221 0.92137 0.92059 0.85546 0.85890 0.85701 0.84647 0.89223 0.90918 0.75726 0.85657 0.87419 0.92320 0.90031 0.88661 0.88958 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.48 9.37 -19.44 -0.18 -3.66 16 4 C 0.14 1.64 6.66 -39.22 -0.26 1.38 16 5 C -0.21 -2.01 9.04 -39.44 -0.36 -2.37 16 6 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 7 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 8 C -0.06 -0.69 9.67 -39.60 -0.38 -1.07 16 9 C -0.13 -1.55 5.29 -104.47 -0.55 -2.10 16 10 C 0.16 2.31 5.92 -5.19 -0.03 2.28 16 11 N -1.12 -17.23 5.88 -11.66 -0.07 -17.30 16 12 S 2.62 52.49 5.19 -107.50 -0.56 51.93 16 13 O -0.97 -21.18 18.08 -57.54 -1.04 -22.22 16 14 O -0.94 -22.56 17.16 -57.54 -0.99 -23.55 16 15 C -0.58 -11.48 5.55 37.16 0.21 -11.27 16 16 C 0.00 0.04 0.79 -155.66 -0.12 -0.08 16 17 C -0.51 -14.32 8.77 -34.44 -0.30 -14.63 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 20 N -0.88 -26.87 13.96 55.43 0.77 -26.09 16 21 Si 0.87 21.10 24.96 -169.99 -4.24 16.86 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.26 -5.68 5.68 56.52 0.32 -5.36 16 25 C -0.18 -3.71 9.96 -26.69 -0.27 -3.98 16 26 C -0.19 -3.89 7.67 -26.69 -0.20 -4.09 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 32 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.14 1.38 8.04 -52.49 -0.42 0.95 16 36 H 0.09 1.28 7.56 -51.93 -0.39 0.89 16 37 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 38 H 0.41 5.62 8.61 -34.47 -0.30 5.32 16 39 H 0.13 2.46 6.53 -51.92 -0.34 2.12 16 40 H 0.11 1.76 8.09 -51.92 -0.42 1.34 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.09 2.01 7.34 -51.93 -0.38 1.63 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -35.43 382.09 -9.94 -45.36 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.81 Total: 9.44 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -2.58 Total: -36.53 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.71 Total: -43.40 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -2.21 Total: -49.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.24 Total: 16.86 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.56 Total: 51.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.43 -9.94 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451100056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.675 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds