Wall clock time and date at job start Tue Mar 31 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46960 * 2 1 4 4 C 1.35903 * 116.99621 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.05844 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94721 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05316 * 359.72066 * 6 5 4 8 8 C 1.38247 * 120.10890 * 0.55425 * 7 6 5 9 9 C 1.38167 * 120.05763 * 359.44909 * 8 7 6 10 10 C 1.50700 * 120.02972 * 180.25234 * 9 8 7 11 11 N 1.46498 * 109.46919 * 260.00239 * 10 9 8 12 12 S 1.65599 * 119.99866 * 165.00077 * 11 10 9 13 13 O 1.42094 * 104.27722 * 181.06389 * 12 11 10 14 14 O 1.42099 * 104.27779 * 308.92629 * 12 11 10 15 15 C 1.81401 * 104.45089 * 64.99417 * 12 11 10 16 16 C 1.53001 * 109.47465 * 173.87518 * 15 12 11 17 17 C 1.50697 * 115.54983 * 65.27268 * 16 15 12 18 18 H 1.08002 * 120.00121 * 268.55042 * 17 16 15 19 19 C 1.37880 * 120.00158 * 88.54509 * 17 16 15 20 20 N 1.31514 * 120.00245 * 174.69710 * 19 17 16 21 21 Si 1.86800 * 119.99551 * 354.70577 * 19 17 16 22 22 H 1.48506 * 109.47199 * 92.55161 * 21 19 17 23 23 H 1.48505 * 109.47073 * 212.54517 * 21 19 17 24 24 H 1.48491 * 109.47669 * 332.54932 * 21 19 17 25 25 C 1.53002 * 117.49887 * 279.60580 * 16 15 12 26 26 C 1.53002 * 117.50221 * 210.94493 * 16 15 12 27 27 H 1.08993 * 109.47050 * 59.99873 * 1 2 3 28 28 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47058 * 299.99478 * 1 2 3 30 30 H 1.09000 * 109.46928 * 239.99985 * 2 1 3 31 31 H 1.08999 * 109.46821 * 120.00482 * 2 1 3 32 32 H 1.08004 * 120.03019 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.97609 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.94487 * 180.30165 * 7 6 5 35 35 H 1.08002 * 119.96866 * 179.72278 * 8 7 6 36 36 H 1.09002 * 109.46928 * 20.00034 * 10 9 8 37 37 H 1.08995 * 109.47261 * 139.99857 * 10 9 8 38 38 H 0.96996 * 120.00158 * 344.99313 * 11 10 9 39 39 H 1.09002 * 109.47562 * 293.88049 * 15 12 11 40 40 H 1.09001 * 109.47068 * 53.87370 * 15 12 11 41 41 H 0.96997 * 119.99565 * 180.02562 * 20 19 17 42 42 H 1.08997 * 117.49852 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.50010 * 145.01828 * 25 16 15 44 44 H 1.08995 * 117.50099 * 214.97817 * 26 16 15 45 45 H 1.09000 * 117.49584 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6094 0.0027 7 6 6.0963 1.8878 -0.0031 8 6 5.2552 2.9849 0.0015 9 6 3.8850 2.8066 0.0005 10 6 2.9688 4.0031 -0.0001 11 7 2.4805 4.2449 1.3598 12 16 1.7646 5.6895 1.7378 13 8 1.4497 5.5738 3.1185 14 8 2.6852 6.6684 1.2757 15 6 0.2501 5.7190 0.7398 16 6 -0.5844 6.9452 1.1152 17 6 0.0378 8.2789 0.7910 18 1 0.6456 8.7844 1.5269 19 6 -0.1686 8.8537 -0.4451 20 7 0.2862 10.0627 -0.6923 21 14 -1.0945 7.9153 -1.7686 22 1 -2.5372 8.2610 -1.7031 23 1 -0.5576 8.2829 -3.1035 24 1 -0.9248 6.4562 -1.5514 25 6 -1.4443 6.8550 2.3775 26 6 -2.1053 6.8279 0.9971 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7886 -0.5729 0.0024 33 1 6.2281 -0.2462 0.0039 34 1 7.1669 2.0293 -0.0072 35 1 5.6695 3.9823 0.0015 36 1 3.5149 4.8787 -0.3512 37 1 2.1234 3.8129 -0.6613 38 1 2.5765 3.5588 2.0387 39 1 0.5122 5.7676 -0.3171 40 1 -0.3277 4.8144 0.9295 41 1 0.1406 10.4672 -1.5618 42 1 -1.4158 5.9220 2.9403 43 1 -1.5602 7.7605 2.9733 44 1 -2.6559 7.7154 0.6853 45 1 -2.5114 5.8773 0.6516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451100056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:51 Heat of formation + Delta-G solvation = -86.036380 kcal Electronic energy + Delta-G solvation = -27989.267972 eV Core-core repulsion = 24099.087489 eV Total energy + Delta-G solvation = -3890.180483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24235 -38.84967 -38.55513 -37.99063 -36.84879 -36.29701 -34.28985 -32.78087 -31.91682 -30.42963 -30.08944 -27.60588 -26.61896 -24.93284 -23.35228 -22.64386 -22.25322 -21.37460 -20.24786 -19.16848 -18.62545 -18.45772 -17.47779 -17.12055 -16.94496 -16.90006 -16.81739 -16.31948 -15.69139 -15.47577 -15.36096 -14.82518 -14.75891 -14.59032 -14.36687 -14.11545 -13.90543 -13.79454 -13.35047 -13.22294 -13.14491 -12.97402 -12.93522 -12.80191 -12.66921 -12.52724 -12.39099 -12.34482 -12.04884 -11.78688 -11.69230 -11.62277 -11.59988 -10.96649 -10.72803 -10.57842 -10.10641 -9.89894 -9.12970 -8.31761 -6.44840 -0.59782 0.32069 0.48908 1.35634 1.37555 1.50851 2.03253 2.28826 2.36123 2.81371 2.87954 3.00747 3.15457 3.39410 3.66141 3.80078 3.85464 4.02873 4.10831 4.16202 4.24000 4.28849 4.32940 4.36236 4.37687 4.41264 4.48698 4.59651 4.63110 4.71345 4.85292 4.87402 4.95310 4.98601 5.01782 5.05880 5.21193 5.25741 5.38884 5.44954 5.50067 5.59892 5.62255 5.87211 6.11307 6.20320 6.48927 6.66393 7.27757 8.84638 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.003795 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.290000 B = 7375.581451 C = 7893.904913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.046 3.954 3 O -0.326 6.326 4 C 0.135 3.865 5 C -0.214 4.214 6 C -0.073 4.073 7 C -0.163 4.163 8 C -0.078 4.078 9 C -0.148 4.148 10 C 0.160 3.840 11 N -1.106 6.106 12 S 2.621 3.379 13 O -0.993 6.993 14 O -0.994 6.994 15 C -0.570 4.570 16 C -0.033 4.033 17 C -0.514 4.514 18 H 0.028 0.972 19 C 0.027 3.973 20 N -0.941 5.941 21 Si 0.932 3.068 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.216 1.216 25 C -0.174 4.174 26 C -0.167 4.167 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.269 0.731 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -28.260 -2.023 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 O -0.240 6.240 4 C 0.088 3.912 5 C -0.233 4.233 6 C -0.091 4.091 7 C -0.181 4.181 8 C -0.097 4.097 9 C -0.150 4.150 10 C 0.034 3.966 11 N -0.866 5.866 12 S 2.718 3.282 13 O -0.984 6.984 14 O -0.984 6.984 15 C -0.702 4.702 16 C -0.036 4.036 17 C -0.551 4.551 18 H 0.046 0.954 19 C -0.172 4.172 20 N -0.579 5.579 21 Si 0.755 3.245 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.138 1.138 25 C -0.211 4.211 26 C -0.206 4.206 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.254 0.746 39 H 0.149 0.851 40 H 0.173 0.827 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.595 -27.187 -1.669 27.623 hybrid contribution -0.381 0.049 -0.720 0.817 sum 4.214 -27.138 -2.389 27.567 Atomic orbital electron populations 1.21826 0.92124 1.04042 1.03071 1.23061 0.96488 0.80854 1.02458 1.86116 1.18586 1.31145 1.88202 1.18956 0.83053 0.93519 0.95625 1.21522 0.94594 0.98374 1.08778 1.21367 0.94550 0.98004 0.95194 1.21356 1.00902 0.92195 1.03670 1.21219 0.91642 1.00512 0.96327 1.19174 0.94348 0.91741 1.09752 1.20099 0.97381 0.96440 0.82658 1.55477 1.76266 1.35691 1.19166 1.04386 0.76774 0.72555 0.74455 1.93464 1.86309 1.86101 1.32496 1.93515 1.61716 1.60103 1.83019 1.30139 1.18943 1.06051 1.15067 1.18780 0.91012 0.91468 1.02294 1.20450 1.31987 1.02439 1.00197 0.95361 1.25934 0.95600 0.95009 1.00637 1.70067 1.47632 1.16231 1.23998 0.85985 0.79161 0.82420 0.76977 1.18650 1.22068 1.13844 1.23100 1.04546 1.02925 0.90506 1.23085 0.94297 1.02816 1.00353 0.92128 0.88204 0.92145 0.90762 0.90832 0.83142 0.82839 0.83699 0.85043 0.90538 0.89898 0.74557 0.85092 0.82683 0.92242 0.87049 0.90126 0.90132 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -6.58 9.37 -92.46 -0.87 -7.45 16 4 C 0.13 2.80 6.66 22.51 0.15 2.95 16 5 C -0.21 -3.34 9.04 22.36 0.20 -3.14 16 6 C -0.07 -1.02 10.04 22.26 0.22 -0.80 16 7 C -0.16 -2.69 10.04 22.28 0.22 -2.47 16 8 C -0.08 -1.68 9.67 22.25 0.22 -1.47 16 9 C -0.15 -3.52 5.29 -19.77 -0.10 -3.62 16 10 C 0.16 4.41 5.92 85.63 0.51 4.92 16 11 N -1.11 -33.26 5.88 -190.80 -1.12 -34.38 16 12 S 2.62 105.87 5.19 -56.49 -0.29 105.58 16 13 O -0.99 -43.53 18.08 -127.65 -2.31 -45.84 16 14 O -0.99 -50.18 17.16 -127.65 -2.19 -52.37 16 15 C -0.57 -21.37 5.55 71.98 0.40 -20.97 16 16 C -0.03 -1.50 0.79 -52.93 -0.04 -1.54 16 17 C -0.51 -30.02 8.77 25.60 0.22 -29.80 16 18 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 19 C 0.03 1.60 5.47 84.66 0.46 2.06 16 20 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 21 Si 0.93 42.65 24.96 68.60 1.71 44.36 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.22 -8.44 5.68 99.48 0.57 -7.87 16 25 C -0.17 -6.97 9.96 30.62 0.30 -6.66 16 26 C -0.17 -6.42 7.67 30.62 0.23 -6.18 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.72 7.67 -2.39 -0.02 0.71 16 31 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.15 1.54 6.30 -2.91 -0.02 1.52 16 33 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.13 2.77 8.04 -2.91 -0.02 2.75 16 36 H 0.08 2.27 7.56 -2.39 -0.02 2.26 16 37 H 0.08 2.09 7.85 -2.39 -0.02 2.07 16 38 H 0.42 11.12 8.61 -96.75 -0.83 10.28 16 39 H 0.13 4.78 6.53 -2.39 -0.02 4.77 16 40 H 0.16 4.31 8.09 -2.39 -0.02 4.29 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 43 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.08 3.30 7.34 -2.39 -0.02 3.28 16 45 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -82.00 382.09 -0.61 -82.62 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.02 Total: 34.09 kcal Atomic # 6 Polarization: -70.87 SS G_CDS: 4.13 Total: -66.73 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -0.82 Total: -94.25 kcal Atomic # 8 Polarization: -100.30 SS G_CDS: -5.37 Total: -105.66 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.71 Total: 44.36 kcal Atomic # 16 Polarization: 105.87 SS G_CDS: -0.29 Total: 105.58 kcal Total: -82.00 -0.61 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451100056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.420 kcal (2) G-P(sol) polarization free energy of solvation -82.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds